AMCG00018491 (slc5a10)



Basic Information


Item Value
gene id AMCG00018491
gene name slc5a10
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12503023 ~ 12520331 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00018491
ATGGACGCCAACTCCACCACGACCTTCTTCGCCCTGTCGCAGTCCTTCAGCGTGTCTGACATCATCGTCATCGCAGCCTATTTCCTCCTGAATGTGGCTGTGGGGATCTGGTCCTCCTGCAGGGTCAGCAGGAACACACTCAGTGGGTACTTCCTGGCGGGACGGGACATGGCGTGGTGGCCGatTGGGGCATCTCTGTTTGCCAGCAGTGAGGGCTCCGGTCTTTTCATCGGGCTGGCTGGCACAGGGGCTGCAGGGGGCATCGCCGTGGCTGGGTTTGAGTGGAATGCGACATACGTCCTGCTGGCCTTGGCATGGGTGTTTGTGCCTGTGTACATCTCCTCAGGGATCGTGACCATGCCAGAGTACCTGGGCCGGCGCTTCGGGGGGGAGAGGATCCGGATGTACCTGTCGGCTCTGTCCCTGCTGCTGTCCGTCTTCACCAAGATCTCGACAGACCTGTACTCGGGGGCGCTGTTTGTCCAGGTGTGTCTGGGCTGGAACCTCTACCTGTCCACAGTGCTGATGTTGGCGGTCACAGCCCTCTACACGATCGCAGGTGGCCTGGCTGCAGTAATATACACTGACACTCTGCAGACCTTCATAATGATCATCGGTGCCATCATCCTGACTATCACAGCTTTTAACAGGATTGGTGGCTACCAGAACCTGGAGGAGGTCTACCTGAAGGCAATCCCCTCTAAGATCATCCCCAACACCACGTGCCATTTGCCCCGCGCTGACGCCATGCACCTGTTCCGTGACCCCGTGGCTGGTGACCTCCCCTGGACCGGCATGACGTTTGGTCTCACCATCCTCGCCACGTGGTACTGGTGCACCGATCAGGCAAGTGCCCACCCCTGCATGTCCCTGTCTGCCAAGAATCTCAGCCATGCCAAGGGAGCATCAATCCTGGCCAGTTACCTCAAGATGCTGCCCATGATCTTTATTATCCTGCCTGGGATGATAAGCAGAGCCCTCTACCCA
>TU146176
cctgtccTTAATGGCAGTGTAAATTTAAGATTACTCAATTTATTAATCAGCCAGGTGGTCTGagaaatagattaaaataaaaggccacaattaaacatttatccCAGGCTTGTCACTTTAAACTCTTCCACTGCTGTAACCAAAAAGGGAGACAAAATTGATCTCCCTCTCCTGCCACATAAAATGATGTGAGCACCAGGTAGCTTTAGGATCCACATttcatttagaagaaaaaaaatgtttactaatgcaaaattattattgaaCAGCCACTCTTCGGCTCAGATTGCACAATATTATCGTGCTTAAGCAAAACAATTAGTTGTGACCATAATTTCTGCACTTCTGAAGAGTCATTATTGAATAGGAGCAAGCCTAGTTGGGTCGGTTTTAAATGgagatttgaaatgcattaaaactaaACTGCTGAACACACGGTTTGATTACACAGAAGGAAAGctagataaatagataaaatgcGATTctccactttcctgctctaaacGCACACAAGGTGTTGTTGTTTATAACacttgtgcaaaaaaaaaaaagtgttatataaCTCAGACATCAACAAAACTGAGACTTCCTGAACATACCAGAGAAGAAAggatatcattttttttcacatttatttaatccaacttatattaatatttacaaatggatattaacacattacaaaatattttaagttaaactGTTCTATAGTTTAATGGATCTGCACCAACCCCAAAGCAGTGTAAACGGACTGTTGCCATGTGTCACTCTGGACCGAGAATGTTTACTGAGGTGTGTCGAGGTTTAGCAGCTTATCTGGGTCACAGGGTTGGGTAGGAGACACACCCTTTGTGCAAAGATAGAAAGAAAATCTCCAGTCGTGAAAATCAGACAGCGGAAAGCTTTAGACCCTCTGAATCTCACGTCTGGATCCGAATGACCTGATGAGCGAGTTTGCAGGCAAGAAACCACAAGGAGTTGAATCAAACCATTCCCCATGAAGTGGATTTAATAAATGATGATTAAATCAACTTACTGGCTTATAGAATATCCATTAAGATATTTTCTGCCTGATGCCTTTTCACCAAAAGCTTACATAAACAgacttaaataaacaaatggtaGACAAATATTTATCACTGCTAATACCTaactgaaatacatacaaaagacAGGCTCTTTAAATTCCAAAAACTATTAAATGCATCAGAGTACATAATATATCCTGCTATTAATGAAGTTAGCCTTGATTTTTAGGGGATTTTAAATTACCAATGTCAATTGCAGAATGGACATGACGTCATCTTTTGGAGGGAGATTTTGGGTTAAGCTAGTAAGTCTCTATATCGCTTTCATAGGACTGACttgatttaaaaccaaaacaccTTTAAACACGAGGTTATGGACTGACAGCCAGGTTTTCACAAATGTATCACTATTTCCCAGGATCTTGCTGATGCATAGAGATCCTGTGGCAACATGCTTGTTCAGTGTGTGCCATACAGTCCAATCCAAATACTGTTCAACAGTATAAGGGAAAAGATGATAGGAGGGTTGTATTGACAAATCCTGGGTCCCATCCGAGAAACAACAAACTGTTGCCCATCAGCTGTAAGAGCAGGGGCTTAAGAGCAGTCTAGCCAGACCTGGGGTCACAAACACACTtgcagttaaatacatttaaaaccaaaagttcactttttaatttcatcagctattgacagaataaaataaaatatatttaagatgtAAAATAATGGGAATACTACTCAATCATTTACAATGGCTATATTCGCCTGCATGACCCCTATTTATCAAGATGAGAGCTGCAAACCACACTTCAATATCAAGTGCCATGCCTTCAACTCCGTTGCAATGGTTTTAAATCTTCTCACACTGCTTTCAAGTATTACGGTATCACAATTTGTAAAATAAGgcacatgtttacatttttttttagtagtGAGGACATCACATTTGCATCTGCaggagcaaaaaataaataaatcacaatttgaaatacatttgattttacaatgcatttgaCCCCAATGTGGGTCTAACCAAATTAATTTATACCCCCATCGCAATGACCCTTTGGATTGCTTTTAAACAGTCAGGCAACAGGCTTCCAGAAGTTGGAAAGGCACAGTGTGataagagatagaaaaatactgCTTAATCTGACAAAATAGGAGAGGCACTTCCCAAAGCCTGCGTTTCAGCTTGTCGAGTTTCTCCGTCTTTTCTCCTCAAACACGTCAGCTTCTCTTGTAAACATAGCAGGCAGCTCCCCATGTATATGCGTATCTCCCTGTTATGTCTATTTATTTCGTATTTATTCAGAGCCGAGAGGCAGGCCATACTTATGTAAAGGATTTAGCTCTTCCATAATGAAATGACTCAGAAGATGAAGGGGGATTCTGATGCTTAATGAGTTATACATTAGGTGTTTCCCCATGTTCCACTGTGTCCATGTTATCCACTGTATGGGTAAACTAATTAGACCGGCAATTAGAACCACAAGGGGAAAATTGAAAGCTCTCAGTTCATCATGTGCAGTCTGTTTTTGCCTTGTATTTTCTTCCTGGGACAAAGTGCATTTGAGTGGGAATGAAGGACTGGAATATTGGCTGGAATATCAGGACTTAAACATGACGGAGAAGGCCAGCCATCTCTCCTAGCCCTTCCGAGGATTCACTGAAGAGGAAAAGATATTCAATAAGAAACACTCATTACCAATCACGAGTGAGGTTAGAAAAAGTGCACTgtagagagggaggcagagaatgtttaacattttgtttatcaACGGTGACTCTGATGTGTGCAGGTCTCCCTTTAAGAAAAATAACCAAGCTCAGTATATCCATTTTGTAGTGTAAACGACAGATTCTCATGTAAGGTTATCGGCTTTTCCCAGTGTCATGTTCCGACCTTACTTGCTGGCAGCTTTTAACAGGATTGGTGGCTACCAGAACCTGGAGGAGGTCTACCTGAAGGCAATCCCCTCTAAGATCATCCCCAACACCACGTGCCATTTGCCCCGCGCTGACGCCATGCACCTGTTCCGTGACCCCGTGGCTGGTGACCTCCCCTGGACCGGCATGACGTTTGGTCTCACCATCCTCGCCACGTGGTACTGGTGCACCGATCAGGCAAGTGCCCACCCCTGCATGTTTGGTCACCTGACCTCCACACCTCCTCAACCCCCATCCACTAGGCTACAGCAGAGGTGGAGGAGGCGGGGAAGTGCAAATCAATCAACAGTAGTCTAAAAGAGACCATTTCAGACTTAATATTGTCTCTCTTCTCAACCAGTTATCCTTGAGTGAGGACAAGGTCAAAATACTGGCCTGGAAGAAAACCCCCCCACAAAAGCAGggaataacaaaaaacatgaaacatccCTTAAAACGAGATTCAGCATCTGAAAGAAGAGATACCCTGTTCCTATGCATGAGGCGATTTGAGAAGTCCTCTGTGACCATCCAagtcctctttttttttttttttttttttttcttcctggagGGGGCTGGGTTACCACACAGTCTGGTTACTAGACAGCTTTGTGTCCTAGAGCAGTCTTTTTAGGAAGGGTGCCCATAGAGGCTGCAGGTAGCCTCCTCTGCAGGTGTTTGACCTGAGAGAGTTTGGCCAAGGAGATGCCAAAGGGAGTCTGGGAGCTGTTGACCAGTTGTTGCCTGTTGGGGGAGTTACGACCACTGGCTAATCTCCCTCGAGAGGTAGGGTAACTTGACTCAGCTTTGATATGGTTGAGGGCCTTGCTCTGCCAGTACTTGTGTCCCCCGATGACAGGCGCTGCAGTCTTGGTGGGCCGATGGTAGCTGCCAGGCTTGGCAATCACCACCCTCACCGGTCCCCGGCTTTGAGACTCCCGATCGGAGCGAATCGTGCTGACGGGAGATCTGGACATCACCTGATACAGCTGtgaaagagcaagagagaagaCTTGTGTTGGTCACTGTGTGCATTGTGAAAAAGCAAAGCTTATATAGACACTAGGCATGGGGATACTGATGTTCTTCTGAG

Function


symbol description
slc5a10 Predicted to enable glucose:sodium symporter activity. Predicted to be involved in sodium ion transport. Located in extracellular exosome.

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00018491 False 987 mRNA 0.58 9 12503023 12520331
TU146176 True 4056 TUCP 0.42 2 12515803 12519881

Neighbor


gene id symbol gene type direction distance location
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding upstream 190209 12293977 ~ 12312814 (+)
AMCG00018483 NA coding upstream 232396 12235011 ~ 12270627 (+)
AMCG00018482 plk1,LOC102776063 coding upstream 300927 12195542 ~ 12202096 (+)
AMCG00018481 NA coding upstream 315695 12186690 ~ 12187328 (+)
AMCG00018477 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding upstream 339216 12151389 ~ 12163807 (+)
AMCG00018492 NA coding downstream 10227 12530558 ~ 12539267 (+)
AMCG00018497 epn2,LOC107738009,LOC104959799 coding downstream 99029 12619360 ~ 12648880 (+)
AMCG00018500 NA coding downstream 193776 12714107 ~ 12738068 (+)
AMCG00018501 LOC107376712,LOC106516530,LOC103393184,LOC108242978 coding downstream 264360 12784691 ~ 12819143 (+)
AMCG00018502 cacna1h,LOC108430011 coding downstream 315893 12836224 ~ 12878881 (+)
G116667 NA non-coding upstream 183535 12287569 ~ 12319488 (+)
G116654 NA non-coding upstream 224183 12278430 ~ 12278840 (+)
G116653 NA non-coding upstream 229527 12272589 ~ 12273496 (+)
G116603 NA non-coding upstream 360888 12139002 ~ 12142135 (+)
G116601 NA non-coding upstream 376324 12126450 ~ 12126699 (+)
G116725 NA non-coding downstream 180170 12700501 ~ 12700765 (+)
G116728 NA non-coding downstream 359255 12879586 ~ 12883914 (+)
G116765 NA non-coding downstream 384769 12905100 ~ 12958552 (+)
G116769 NA non-coding downstream 412609 12932940 ~ 12934564 (+)
G116775 NA non-coding downstream 526786 13047117 ~ 13048094 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 2969 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 532245 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1246858 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 2210762 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 2456500 10044452 ~ 10046523 (+)
AMCG00018498 NA other downstream 23214 12543545 ~ 12611879 (+)
G116832 NA other downstream 733012 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 787567 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 1477578 13997909 ~ 14022806 (+)
G117033 NA other downstream 1525928 14046259 ~ 14049153 (+)

Expression



Co-expression Network