AMCG00018493 (prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541)


Basic Information

Item Value
gene id AMCG00018493
gene name prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12489467 ~ 12500054 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018493
GCGTCTAGGGGTGGAGCTGGGAAAAGTACAGGTCTACCAGGAAGCCAACAGAGAAACCAGAGTGCAGATCCAGGAGTCGGTCAGAGGGAAAGATGTCTTCATCATCCAGACAGTGTCAAAGGATGTCAACACCACCATCATGGAGCTCCTTATCATGGTGTACGCGTGCCGGACGTCCTGTGCTCGCAGCATCATCGGTGTCATCCCCTACTTCCCCTACAGCAAGCAGTGCAAGATGAGAAAGAGGGGCTCCATCGTCTCCAAGCTGCTGGCCTCCATGATGTGTAAAGCAGGCTTGACGCATCTGATCACCATGGATCTACACCAGAAGGAAATCCAGGGCTTCTTTAACATCCCAGTCGACAACCTGCGCGCCTCCCCTTTCCTCTTGCAGTACATCCAGGAGGAGGGATGTCTGCCGCTGTGCAGCAGCAGAGCGGGCCGCAGCCTCAGTGACGGCGCTGTTGTGTGGTCTTGCAGGGCCCAGTCGTTTGCGGAGCGCCTGCGGCTGGGCATTGCGGTGATCCACGGCGAGGCGCAGGACGCTGAGTCAGACCTGGTGGATGGACGCCACTCGCCGCCCACTGTCAAGAACATGGGAGCCATCCACCCCAGCCTAGAGATACCTTTGCTGATTCCCAAAGAAAAGCCCCCGATCACAGTAGTGGGAGATGTAGGGGGGCGCATCGCCATTATTGTGGATGACATCATCGACGACGTGGACAGTTTCCTGGCGGCGGCCGACACTCTAAAGGAGAGGGGGGCCTACAAGATCTACGTCATGGCCACCCACGGCATCCTGTCCTCCGACGCCCCACGCCTCATAGAGGAATCTGCCATTGATGAGGTCGTAGTGACAAACACAATCCCCCACGAGATTCAGAAGCTGCAGTGTCCGAAGATCAAGACGGTGGACATCAGCATGATCCTGTCTGAAGCCATCCGGCGCATTCACAACGGGGAGTCCATGTCCTATCTATTCCGCAACATCGGGATGGATGACTGAGCCAGGCCCCGGGACGCCTCGACCCGCGGTGCGGACCGAGCGATCTGGACTCTGCACTGAGGCCAAGTCTTCTTCATGGcaaccattttttattttgtttcttttgattttattgCGTTTTAAATCCTCTCTGCTGCAGTGAATTGTGCACAAATTCCAAAAGCGGTATGCCAtagctttatttttgtaatttttttttttttttttgggtcatgatttaaagatttttttttagatgtaccttccacctctctccctccccccttttcattttgattcaCCTTGAGTCTTTTTAAGTTATTCGGTTTCCTATCGGGATCTTGGTAATTTCTTGTTGACTAAGAAGTGCTGCCGGTATTGAGAGACccaaatctgtgtttttatgctTCTTGAATTCTCGATGAACAGAaggagggggtgggtggggggaaTCTAAAATGCagctgaaatactgaaatgattgtatatatttctgaaaaaacatGACTGAGCCACCTTTGAAATGGGAGGGGGGTGTGCATAGATTGCGACAGTGTACTTCTCGTCTGTGACATTCCAGTAGTGTTGCCTGCACTGCACACTTCCCTGTAATCTCTGTTTGGGGACATTCTcctactttttttcctctccccattttgcttttttataaCCCTGCTCTAAGCTTAGATTCAGCCCGTATCTCCCAAAGCAGTTTCTCTTATGCCAAGCTGTCGATACCAATCCAGGCAACATCTCGTTGTGCCTCCCCAGCGCTCCAGCAGGGTTGATTTTAAGTATAGCTGTCTTGTCGCCACTCTGGCCTGGCAATGCCTGTGCCCTTGGCGTTTGCAGTGGCACGGCTTTTCCAGCTTCTATAGAGTCAGACCCGTTTTCTTCAGTACAAAATGACACGGCATGCTTAAAGCCCATGCCGgtatgctttcatttattttgtttgcatcagTGATTGGCGGAGGGGGAGGAGCTGCTTCCTGTTCCTGGATTCagttctcatttatttatgtggtgCTTCCTTCCTCCTGTTCGAGGACCTGCTGACCCATGGCTGGCCCTCTTTCTACTTGATGGTCCTTCACTGTCCAGCTCACCATTCACTCGCACACTGCTACCCCATTACGTAGTGAATATCACTGGCCCACCGACAGCATCGCTGCCCCTAACCTTCGCCGTTACACACTCCCCAACACGGCCAAGTCACCCGGCTGTCCCTCACAGTCCAATCTTTCAGTCGTACAAACTTCACAGCGGCTCCCCCTGCCTGGCCACTTAGTACACTAGAAAGCGAAACCTTCCAGTGGAAAACCCCCGAGCGCCCTGAGGCACAGACGTTCGCCAGCAATATGTTTTGTTGAAATGACACTTCttattcctcttttttttgCCTCCTCTTGTTTTTTCTCATGGGTGGCTcttcacacatttacatttaatgtctGATGGTCCAGAAACACTGACATAGCCTATAACACTGTCCCTAGCTGTCCTTACCGTTACAGAGGGTTTAACACCCCAACACCGTTCCCAGTAGTCCTCCACGGTTCACAGCACTGTCTGCTCCGTTATATATGCCTTCACAAGCTCGGCCCGGGCGCAGGTGCTGGTTCCCTGGCTTGTTGTAGTGAAACCGCTTTTAGTTGGAACTTTTCTGACAACTGTGTCATCATGCCTTTAGACTTGCTATACAGTAAGAAATTCAgaatttattactattatgatttattttttaaacggaCACAAAACTGGAAATTTATAAGGGATGAGCAAAGCTAAGCCTTAGAATCATGTTTGAAAAATACCTAACTATATGAAGGGATTGTTTGCTGACTTCTAGTGAAAGTAGACTTGAGATGCATTTTTAAGTTTGAATGACAAGATCCTCACACACCACCGCGCCCTAACAAACAATCCAGAGAAAGAGAGTGCTCTAATTTTCTCCTTTTCTGGTTCAGACCTTGCTCTGGTCATTCTCATCCCGTTTTCAGTGCAAGTTACTCATCGGAGAAGGAGCGAGACCCTCCTCTCCATGCTGTGAAATGAACTGTTGGGTTGAGAAGTCCATtttcacagtgtgtgtgggttAATGGATCATTGTAGTGACAATTCAAGCTTACAGggataatgaaataaaagcagtttgtatgtgattaaaagaagaaaggaagaaaaaaaaaaacgcttttgtatttattttctgcaaacgaggacaaaagtgaaataaatgaaacttTCTCAGAGGG
>TU146168
GGATGACATCATCGACGACGTGGACAGTTTCCTGGCGGCGGCCGACACTCTAAAGGAGAGGGGGGCCTACAAGATCTACGTCATGGCCACCCACGGCATCCTGTCCTCCGACGCCCCACGCCTCATAGAGGAATCTGCCATTGATGAGGTCGTAGTGACAAACACAATCCCCCACGAGATTCAGAAGCTGCAGTGTCCGAAGATCAAGACGGTGGACATCAGCATGATCCTGTCTGAAGCCATCCGGCGCATTCACAACGGGGAGTCCATGTCCTATCTATTCCGCAACATCGGGATGGATGACTGAGCCAGGCCCCGGGACGCCTCGACCCGCGGTGCGGACCGAGCGATCTGGACTCTGCACTGAGGCCAAGTCTTCTTCATGGcaaccattttttattttgtttcttttgattttattgCGTTTTAAATCCTCTCTGCTGCAGTGAATTGTGCACAAATTCCAAAAGCGGTATGCCAtagctttatttttgtaatttttttttttttttttgggtcatgatttaaagatttttttttagatgtaccttccacctctctccctccccccttttcattttgattcaCCTTGAGTCTTTTTAAGTTATTCGGTTTCCTATCGGGATCTTGGTAATTTCTTGTTGACTAAGAAGTGCTGCCGGTATTGAGAGACccaaatctgtgtttttatgctTCTTGAATTCTCGATGAACAGAaggagggggtgggtggggggaaTCTAAAATGCagctgaaatactgaaatgattgtatatatttctgaaaaaacatGACTGAGCCACCTTTGAAATGGGAGGGGGGTGTGCATAGATTGCGACAGTGTACTTCTCGTCTGTGACATTCCAGTAGTGTTGCCTGCACTGCACACTTCCCTGTAATCTCTGTTTGGGGACATTCTcctactttttttcctctccccattttgcttttttataaCCCTGCTCTAAGCTTAGATTCAGCCCGTATCTCCCAAAGCAGTTTCTCTTATGCCAAGCTGTCGATACCAATCCAGGCAACATCTCGTTGTGCCTCCCCAGCGCTCCAGCAGGGTTGATTTTAAGTATAGCTGTCTTGTCGCCACTCTGGCCTGGCAATGCCTGTGCCCTTGGCGTTTGCAGTGGCACGGCTTTTCCAGCTTCTATAGAGTCAGACCCGTTTTCTTCAGTACAAAATGACACGGCATGCTTAAAGCCCATGCCGgtatgctttcatttattttgtttgcatcagTGATTGGCGGAGGGGGAGGAGCTGCTTCCTGTTCCTGGATTCagttctcatttatttatgtggtgCTTCCTTCCTCCTGTTCGAGGACCTGCTGACCCATGGCTGGCCCTCTTTCTACTTGATGGTCCTTCACTGTCCAGCTCACCATTCACTCGCACACTGCTACCCCATTACGTAGTGAATATCACTGGCCCACCGACAGCATCGCTGCCCCTAACCTTCGCCGTTACACACTCCCCAACACGGCCAAGTCACCCGGCTGTCCCTCACAGTCCAATCTTTCAGTCGTACAAACTTCACAGCGGCTCCCCCTGCCTGGCCACTTAGTACACTAGAAAGCGAAACCTTCCAGTGGAAAACCCCCGAGCGCCCTGAGGCACAGACGTTCGCCAGCAATATGTTTTGTTGAAATGACACTTCttattcctcttttttttgCCTCCTCTTGTTTTTTCTCATGGGTGGCTcttcacacatttacatttaatgtctGATGGTCCAGAAACACTGACATAGCCTATAACACTGTCCCTAGCTGTCCTTACCGTTACAGAGGGTTTAACACCCCAACACCGTTCCCAGTAGTCCTCCACGGTTCACAGCACTGTCTGCTCCGTTATATATGCCTTCACAAGCTCGGCCCGGGCGCAGGTGCTGGTTCCCTGGCTTGTTGTAGTGAAACCGCTTTTAGTTGGAACTTTTCTGACAACTGTGTCATCATGCCTTTAGACTTGCTATACAGTAAGAAATTCAgaatttattactattatgatttattttttaaacggaCACAAAACTGGAAATTTATAAGGGATGAGCAAAGCTAAGCCTTAGAATCATGTTTGAAAAATACCTAACTATATGAAGGGATTGTTTGCTGACTTCTAGTGAAAGTAGACTTGAGATGCATTTTTAAGTTTGAATGACAAGATCCTCACACACCACCGCGCCCTAACAAACAATCCAGAGAAAGAGAGTGCTCTAATTTTCTCCTTTTCTGGTTCAGACCTTGCTCTGGTCATTCTCATCCCGTTTTCAGTGCAAGTTACTCATCGGAGAAGGAGCGAGACCCTCCTCTCCATGCTGTGAAATGAACTGTTGGGTTGAGAAGTCCATtttcacagtgtgtgtgggttAATGGATCATTGTAGTGACAATTCAAGCTTACAGggataatgaaataaaagcagtttgtatgtgattaaaagaagaaaggaagaaaaaaaaaaacgcttttgtatttattttctgcaaacgaggacaaaagtgaaataaatgaaacttTCTC

Function

symbol description
prpsap2 Predicted to enable ribose phosphate diphosphokinase activity. Predicted to be involved in 5-phosphoribose 1-diphosphate biosynthetic process and purine nucleotide biosynthetic process. Predicted to act upstream of or within nucleoside metabolic process and nucleotide biosynthetic process. Predicted to be part of ribose phosphate diphosphokinase complex. Predicted to be active in cytoplasm. Orthologous to human PRPSAP2 (phosphoribosyl pyrophosphate synthetase associated protein 2).

NR:

description
PREDICTED: phosphoribosyl pyrophosphate synthase-associated protein 2

GO:

id name namespace
GO:0009165 nucleotide biosynthetic process biological_process
GO:0004749 ribose phosphate diphosphokinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018493 True 3243 mRNA 0.48 8 12489467 12500054
TU146168 False 2538 lncRNA 0.46 2 12496794 12500048

Neighbor

gene id symbol gene type direction distance location
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding upstream 176653 12293977 ~ 12312814 (+)
AMCG00018483 NA coding upstream 218840 12235011 ~ 12270627 (+)
AMCG00018482 plk1,LOC102776063 coding upstream 287371 12195542 ~ 12202096 (+)
AMCG00018481 NA coding upstream 302139 12186690 ~ 12187328 (+)
AMCG00018477 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding upstream 325660 12151389 ~ 12163807 (+)
AMCG00018492 NA coding downstream 30504 12530558 ~ 12539267 (+)
AMCG00018497 epn2,LOC107738009,LOC104959799 coding downstream 119306 12619360 ~ 12648880 (+)
AMCG00018500 NA coding downstream 214053 12714107 ~ 12738068 (+)
AMCG00018501 LOC107376712,LOC106516530,LOC103393184,LOC108242978 coding downstream 284637 12784691 ~ 12819143 (+)
AMCG00018502 cacna1h,LOC108430011 coding downstream 336170 12836224 ~ 12878881 (+)
G116667 NA non-coding upstream 169979 12287569 ~ 12319488 (+)
G116654 NA non-coding upstream 210627 12278430 ~ 12278840 (+)
G116653 NA non-coding upstream 215971 12272589 ~ 12273496 (+)
G116603 NA non-coding upstream 347332 12139002 ~ 12142135 (+)
G116601 NA non-coding upstream 362768 12126450 ~ 12126699 (+)
G116725 NA non-coding downstream 200447 12700501 ~ 12700765 (+)
G116728 NA non-coding downstream 379532 12879586 ~ 12883914 (+)
G116765 NA non-coding downstream 405046 12905100 ~ 12958552 (+)
G116769 NA non-coding downstream 432886 12932940 ~ 12934564 (+)
G116775 NA non-coding downstream 547063 13047117 ~ 13048094 (+)
G116585 rbbp6,LOC107689611 other upstream 518689 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1233302 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 2197206 10257805 ~ 10292261 (+)
AMCG00018406 NA other upstream 2442944 10044452 ~ 10046523 (+)
AMCG00018405 NA other upstream 2476794 10004273 ~ 10012673 (+)
AMCG00018491 slc5a10 other downstream 2969 12503023 ~ 12520331 (+)
AMCG00018498 NA other downstream 43491 12543545 ~ 12611879 (+)
G116832 NA other downstream 753289 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 807844 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 1497855 13997909 ~ 14022806 (+)

Expression


Co-expression Network