AMCG00018498


Basic Information

Item Value
gene id AMCG00018498
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12543545 ~ 12611879 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018498
ATGAGGGTGTATACAAATGTGTTCCTTCTGCAGATCCCAGTGAGTTTACTGAGCAGTGACATCAATGGAAATCATGAGCAAGCAATATGGAGGCAGAGCTTTCTGCACCACAATGTGCATTGGTCTAGCCTGCACTGGCCTGGTGCCCTACTCACACTGCTGTCTGCACTGGCGCTGCTGGGCTGCCACGCCATTCGTGCTGAAAACAGCGATGGCACTGCACTGGCTGGCAGTGTGGCCCTGCTTCTCCTCCTGGCACTCAGCCTGGCCGCACTGGCATGGCAGCAGCacttgaggagggaggagatgccCAACCGAGTGAAGGCACTGATCCAGGAAATCCATGAGGTCCTGAATCAGCCCCAGATGAGCTGGATGGAGAGCTATGTGAGCCTGTTCTCCCCATGCTCTGATGCCGTGTCGCTGCAGTGGACTTATCGAGACGGCCGCCTGGTTAATTTGCCTGTCAGTCTGCTGGTGGAAGGAGACATCATTGCCCTGAGGCCCGGCACTGCGGCGCCCACAGCTCTCAGGGGCATCCAGGAGGAGGAGCATGTGGTCCTGTCCCGTGGTGATGTCTTCAGCCatctctcctcccctccttcCCCATTGGACAGTGACAGACCCCGCCCACACAGCCTGCTCCATCCACAGCTCTTTAGGGTGACAAAGACGCCTGCCATTGAGACTGTGCAGCAGTGTCTGGAACTGGGGCAGTGGAGGCCAGTCACAGTGCTAGACAACGAGCGCTTCACTGCCCAGAGGCTGCTGGAGAGAGGCTTGACCCCCCTGCTGCTGGTGCTGTTGTTGATGGTGAACCTTGCACGCTACTTCCTAGGAGCTCACAGTGTTGGGCCCTGGCCAGTCCCCCTGCTGCAGTTGCCAGTCAATGGGGTTCTGCCGCTGCTACCCCTAGCCTTCCCATTGCTGTGGCAGCAGGCCTGTGTGCACGGCGAGGTGCAGGTGCTGAGCCACCTGGGAGCCCCTGTGCAGGGCTGGAGGGAGAAGTGCAGGCGTATCTGGAGGCACTGTGTAGGCCTGCTGTGTGGAAAGGCCCTGGCTCTATCCTACACTACGAGCCTCCTCCATAGCCTGGGCTCTGTAACGgTGTTGTGCTGTGTGGATAAGCAGGGGATTCTGTCCTGGCCCACTCCAAGCCCAGAGAAGATTTTGTTCTTCAGCAGACCTTCAGGACTTGGTGGTGACAGCAAGAGGAGCACAAGGGACCCCGAAGAAACCACCCCTCTGCCCGACTCCGGACCTCCAGGCCGCAGTGTGCTGGAGGTGCTCAGCCTGTCCTCGGACCGGCAGACAGACGCATGGGTCCAGTTTGACGACTCCCGCTGGCAGCGCCACACTTCCTCACTGCGTCCGTTGGGCCTTGGCGCCCTGTTGGCCCTCTGTAACCCCCAGGCTGCTGCCAGGGTGTGGTGCCTCGCCGATCACCTGACCCATGCCTCGCTACTAAGGGGGCGGCCTCGATGCCAGCCTGTGTGCCCGCCCTGGGGGCTGTGGTTCAGGCCTTCAGCGCAGGAGCCGTTCCAGCAGCAGATGAGTCTGGCGACCTACACCCTGCCCTCTGTCCCCTGTGCCCAGAACAATTCGCCCTGGCAACCACAGCCCATGGCCATGAAGAGTCTTCCTCTATCTCACATCATCAGCCTGGTGGTCCATAACAGCAACTCAGGGGATGCTCAGCTCTTTTCATACGGCTCAGCAGACACCATCCTGGCAACTTGCGTTGAATTCTGGGATGGCTCAGACCTCCACCCCCTCACCGATGCTGACAGGAAGAAGGTCCTCGATTTTTACCTGCGGTCCTGCATGGCTGGGCACTGCCTGGCTCTGTCTTTTAAACCTCTCCTCCAGACCCTGGACCTTCAGATGGATGACCACTGTGTGGAGATGCCCCATGGCCTTTCTCCCCCAACAGGAGGAGAAAGTGAGGGCAGCCCCCCAGACCGAGAGGAGCCCCTGCCCACCTTGCAGCAGCAGATCTTCCTGGGCCTGGTGTCTTCACAGTACCAGGCTCGGCCTGATGTGGTGCGGCTCATCGCTGGGCTGGACAGCACCTGCATCCGTTTTGTGTACTTCTCACTGGAGGAAGAGGTCAAGAGCAAGTTGTTTGCTGAGAAGAtgggtctggagactggctggAACTGTCACATCTCCCTGCAGTCCGACTGCTTCCCCCTGGACCCCGAGAGCCTGAAAGAGGCGGAAGAACTCGGCGacaagagagaggggggtgaaTTATTGGAGATTCCAGCAATGTGTGAGATGGTGCAGGTGATGCAGGAGTATGGGGAGGTGGTGTGCTGTCTGGGCAGCAGCCaaaatatcaacaacaacacagtcTTCCTTCAAAGTGACATCAGCATCGCTCTGGAGCccctcttcccctcctccagTTGGACCAATCCCAACAAATCAACCCCTCAGTTGTACACAACCCCGCCCCTCCCTGGCTCCTCCCCACTGTCTCCGACTCAGCTCTCCAGCGCCATCTGTGGGCTGCCCTGCACAATCCACCTGGGCTCACAGGAAAACACAACCATTATCCGTCTCATCAAGCAGGCCCGACACACTACTTCTGGCCTCAGGAAGTGCTTCCTGTTCCTCCTGCAGTGCCAGCTCTTCCTGGTCCTCATCCAGttTCTGGCCTGCCTGTGTCAGCTCCCACCACCCCTGGGCACAGGTGATGTGCTTTGCCTCTCATGTGTCCACTTCCCCCTCCTCAGCTCTTACCTCTCTCTTCTCAGCCTGTCTCTCCTGGGCAAGCCTGTGGACAGCGGTGTCATGAAGGTGCCCACTGGGAAAAACCTACGCTTTCTGCCCAAGAAGACCCAGCAGCTGTTTGTGGTCTACTTCCTGGTGAAGTTCGGTCTGACTGTCTGCACCTACCTGGCGTGTTTTGGTCTGATGCTCCACGAGTTCTGTCTGAAAATCCACCAGGAGTCCGAAGCACTTTGCCATCTAACTGTTCTCCTGGCGGGATcctctgtGAACTCCACGGGCCCTGACTGGTTTGGAGAACATGCTGATGGGCTGGCTCTGGCCCAAAAGACCATCGCCTTCTTCATCCTGCTGAACGCCAGTGAGCACACTGCCCTGCTGCAGCTCACCCTACAGGTTTCTATAACCACAGCCGCCTGCCTCCTGTGGGCTGATCCCAGCCCCCAACTTACCTTTGACATCACTGACATCCCAGCAGCCACCTGGCTCCTGGGCTCCCTGTGGCTCCTGCCCCTGATGTGCATCAATGAATGGATAAAACTCCATGAGATCAGGACGAGAGAGAGGTACCACAAGAGACGGAAGCTGCAGTTTGACACCAAGCTGGGGATGAACTCTCCATTCTGA
>TU146185
GATCCTATCCTTGTTCCCCACATCTTTATAAATCTCAGGTACAGAATATGAAAACGGTATCCACAAACATCTTTACAGTAATGTCTTTTGTGCTTGAGTAGCCAGTGAGCGATTACTTCCCCACACTGAAGTATAACCATCCAGTATCACCATTCATAGCAATGGAGCATGAGTCTTAATACCATTGGGGTGAAGCGGTTCTACGATTCTGCATTGCACATTGAACAAAAAGCTGGTGTCCTACTTTAAATGGCAATTACTAACATACTGCCTTAAAGGAAATCCATGCGATGCTTGGAAACAGATGAGGGAGACTGGAAGTTTACTTGCACTTGAACGTGCTTTAGTTGTGTTTGCACAGATAGGGAACAAATAACAGTTTCTCCTGTCTTAGttgacacaaaagaaacacaGTGCTATCCAAAGCTTATGTACGGTTCCAGAGCTGGACTTTAAAAACAGTAGTTCATATTGTATAGGATGATAATACTTATTGCACGCAGGAGTTTGCAAAGCCACTGAAAGCAATGGAATTAGTTACTAGAGATATTTGTTTGCATGAAGAGCTATAATACAAGTGTCTCACATGTGCCTGTCTCCGGATGTCGACACTGCctgtgtttttcatatatatccATCTCCTAAAACAGAGATGTCTCCTCTCACTTGCTATGACTGAGCCTCCTGTCCCGCCAACAGGGGCTTTAGTGTCTAATCAACAGAAAGATGTTTTGACAACAGGATGtttacttgaaaaaataaaaaatgaaatgcacaggAGATTGCGATCTTCAGTGTTTTCTAGTTAAAAATGCAGTGGTTTCAGAGACCACAGCCCTTTTCTTTTGACCTCCTCCTCCCACctgtagttttttatttttatgttacgttgtcagtgcagtgtgcagtgggTGTGAGGGTAGCCATGAGATGCTGAGAAACGAATATGGATAAATCCCAGGGGAGGAAACTGTCTGCAGTCACATGCATATCACAAACTCTTCAGAGCAAACACTTTGTTAGCAGGGGAGTTTTATAGAGACGGCCCAACCCCCACTTCCTGTTGGGACAATGGTGTTGACTCCCCTCCTTTTACTTCAGTTTCCTTGTGCATTATTCTTGTGTGCATTTTCCACTCAGTTTTTCTTTTAGAGATTGAAGAGTCTCCATCTCTAAAACCCTCTTGGTCTCTTGATCTTCCTGTCACCCTACCACAACAGCTCTCTCTTCCCCACGGCCATGGATCATGCTTTTGCTAACCATTGGTGTCCCTGTTACTGTATACATGTAAGCCAAGTCTGAAATGAAACCAGGTGGATTTGGGCATTAAGGGAATAACTGACTGAATTCTCTCTCCTGTTGGGCCGTCAGGGGGGTGGTTCGGGGGCAGGGTCAGTAGTAGATGGGCTGGACATATTCGGGAGGGAAGAAGCCCACGCGGCCATGGCAGCGGCCTTTCCAGCGCTGAGTGTCCGAGCAGTCAAGGAGATCGATGATGTCATCGCGCATGAAGTGCAGCTGGGAGACGTGCTGAGGGGTGAAGTCGAAGAGTGCCCGGGCATGACGTGGCCTCTAGGGGGAGACAAACAGAAAGCAACACCACAACAGAGGTCCTGAATCAGCCCCAGATGAGCTGGA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018498 True 3363 mRNA 0.58 25 12580442 12611879
TU146185 False 1638 lncRNA 0.45 2 12543545 12588656

Neighbor

gene id symbol gene type direction distance location
AMCG00018492 NA coding upstream 4278 12530558 ~ 12539267 (+)
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding upstream 230731 12293977 ~ 12312814 (+)
AMCG00018483 NA coding upstream 272918 12235011 ~ 12270627 (+)
AMCG00018482 plk1,LOC102776063 coding upstream 341449 12195542 ~ 12202096 (+)
AMCG00018481 NA coding upstream 356217 12186690 ~ 12187328 (+)
AMCG00018497 epn2,LOC107738009,LOC104959799 coding downstream 7481 12619360 ~ 12648880 (+)
AMCG00018500 NA coding downstream 102228 12714107 ~ 12738068 (+)
AMCG00018501 LOC107376712,LOC106516530,LOC103393184,LOC108242978 coding downstream 172812 12784691 ~ 12819143 (+)
AMCG00018502 cacna1h,LOC108430011 coding downstream 224345 12836224 ~ 12878881 (+)
AMCG00018503 znf598 coding downstream 273308 12885187 ~ 12904501 (+)
G116667 NA non-coding upstream 224057 12287569 ~ 12319488 (+)
G116654 NA non-coding upstream 264705 12278430 ~ 12278840 (+)
G116653 NA non-coding upstream 270049 12272589 ~ 12273496 (+)
G116603 NA non-coding upstream 401410 12139002 ~ 12142135 (+)
G116601 NA non-coding upstream 416846 12126450 ~ 12126699 (+)
G116725 NA non-coding downstream 88622 12700501 ~ 12700765 (+)
G116728 NA non-coding downstream 267707 12879586 ~ 12883914 (+)
G116765 NA non-coding downstream 293221 12905100 ~ 12958552 (+)
G116769 NA non-coding downstream 321061 12932940 ~ 12934564 (+)
G116775 NA non-coding downstream 435238 13047117 ~ 13048094 (+)
AMCG00018491 slc5a10 other upstream 23214 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 43491 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 572767 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1287380 11252359 ~ 11256165 (+)
AMCG00018422 NA other upstream 2251284 10257805 ~ 10292261 (+)
G116832 NA other downstream 641464 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 696019 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 1386030 13997909 ~ 14022806 (+)
G117033 NA other downstream 1434380 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 1529498 14141377 ~ 14145995 (+)

Expression


Co-expression Network