AMCG00018500


Basic Information

Item Value
gene id AMCG00018500
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12714107 ~ 12738068 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018500
ATGACTGATGGCGAGGGGAGAGAGCACCTCCAGCAGCTGGGGAGCGAGGAGGTGAGGGTACCGATTGCGCCGTCGGCTCAGGATGAGGAccagggggaggaggaggatgggggCAGCTCTGGGAACCCGGTTCAGGACAGCATTGGGTCGGGGGGCTCCAGCGGCCGCGATCGCGTCCCAGATCTGGTGTCGGAGGATGAGGAGCAGCACCCATATCCGGCCCTCGCACCCGTGGTCTTCTTCTGTCTCAAGCAGACAACACGTCCTCGCAGCTGGTGCCTCAGGCTGTCTCTTGACTTTATAGTGATTTAG

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018500 True 312 mRNA 0.63 2 12714107 12738068

Neighbor

gene id symbol gene type direction distance location
AMCG00018497 epn2,LOC107738009,LOC104959799 coding upstream 65227 12619360 ~ 12648880 (+)
AMCG00018492 NA coding upstream 174840 12530558 ~ 12539267 (+)
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding upstream 401293 12293977 ~ 12312814 (+)
AMCG00018483 NA coding upstream 443480 12235011 ~ 12270627 (+)
AMCG00018482 plk1,LOC102776063 coding upstream 512011 12195542 ~ 12202096 (+)
AMCG00018501 LOC107376712,LOC106516530,LOC103393184,LOC108242978 coding downstream 46623 12784691 ~ 12819143 (+)
AMCG00018502 cacna1h,LOC108430011 coding downstream 98156 12836224 ~ 12878881 (+)
AMCG00018503 znf598 coding downstream 147119 12885187 ~ 12904501 (+)
AMCG00018507 drg2 coding downstream 196528 12934596 ~ 12943295 (+)
AMCG00018508 NA coding downstream 220644 12958712 ~ 13031788 (+)
G116725 NA non-coding upstream 13342 12700501 ~ 12700765 (+)
G116667 NA non-coding upstream 394619 12287569 ~ 12319488 (+)
G116654 NA non-coding upstream 435267 12278430 ~ 12278840 (+)
G116653 NA non-coding upstream 440611 12272589 ~ 12273496 (+)
G116603 NA non-coding upstream 571972 12139002 ~ 12142135 (+)
G116728 NA non-coding downstream 141518 12879586 ~ 12883914 (+)
G116765 NA non-coding downstream 167032 12905100 ~ 12958552 (+)
G116769 NA non-coding downstream 194872 12932940 ~ 12934564 (+)
G116775 NA non-coding downstream 309049 13047117 ~ 13048094 (+)
G116790 NA non-coding downstream 391670 13129738 ~ 13215352 (+)
AMCG00018498 NA other upstream 102228 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 193776 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 214053 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 743329 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1457942 11252359 ~ 11256165 (+)
G116832 NA other downstream 515275 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 569830 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 1259841 13997909 ~ 14022806 (+)
G117033 NA other downstream 1308191 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 1403309 14141377 ~ 14145995 (+)

Expression


Co-expression Network