AMCG00018502 (cacna1h,LOC108430011)


Basic Information

Item Value
gene id AMCG00018502
gene name cacna1h,LOC108430011
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12836224 ~ 12878881 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018502
CCAGAGGAGCTCACAGACATCCTGGAGATCAGCAACATCGTCTTCACCAGCATGTTTGCTCTGGAGATGCTGCTCAAGCTCCTGGCTTTTGGGCTCTTCGGATACATCAAGAACCCCTACAACATCTTTGATGGGATTATAGTTATAATCAGTGTGTGGGAGATCATCGGCCAGTCTGATGGGGGCCTCTCGGTGCTCCGGACCTTCCGCCTGCTGCGGGTGCTCAAGCTGGTGCGCTTCCTGCCCGCCCTGAGGCGCCAGCTAGTGGTACTGATGAAGACCATGGACAACGTGGCCACCTTCTGCATGCTGCTCATgctcttcatcttcatcttcagTATTCTCGGGATGCatctttttggctgcaagttcAGCCTGAAGACTGAAAATGGAGACACTATTCCAGACAGGAAGAACTTTGACTCTTTGCTCTGGGCGATCGTCACAGTATTTCAGATCCTGACCCAGGAGGACTGGAATGTGGTTCTGTACAATGGGATGGCGTCCACCTCACCCTGGGCGGCACTGTACTTTGTGGCCCTGATGACATTTGGCAATTATGTCCTCTTTAATTTGCTGGTGGCTATTCTGGTTGAAGGTTTTCAAGCAGAGGGAGATGCAAATAGGTCTGACACAGATGAAGATAAAACATCGACCAATTTCGAGGATGATGAGAAAATGAGGGAGCTGCATGCAGCAGAGTTGAAGATGTACTCTCTGATGGTGACCCCGAATGGACACATGGAGTCTCGGGCCAGCATGCCCCCACCCATCATCATGCGCACTGCGGCCACACCAATGCCCACCCCCAAGAGCTCCCCCTACATGGACTCTGTGCACACCTTCTGCGACTCTCGCCGCGGCAGCAGCACCTCCATCGACCCCAACACCTATGACCAGAGGTCCCTGTCCAGCCTGCGCAGCTCCCCCTGCCCTCCCTGGGGTGCAGGCAGCAACTGGGGCAGCCGGCGCTCCAGCTGGAACAGCCTGGGCAGGGCCCCCAGCATGAAGAAGAAGTACCAGTCAGGGGAGCGGGAGTCCCTTCTGTCCGGCGAGGGCCGGGGCAGCTCCGATGATGACGACTCTGACGGGGGCAAGTCCAGTAAGACGGGCAGCGTGAGCGGGGCCTCCCTGCATCCCTGCGCGGAGTCCCTGGACCTCCCGGAGCTCCTGCAGGTGCCCACCTTGCGCCAGCACCCTGAGCACCAGGACTGCAATGGCAAGACCCTTCACCTGCCCCCTGACTTCTACCTGCGCTCGGATGCACACAAAGATGACCCCACAGACTACGAGGACGACATTGAAGCTAGCTACTGCTTCCGGATCAAGAAGATGCTCGAGCCGTACAAGCCACAGTGGTGCAGAGATCATGAAGACTGGGCTCTGTATCTGTTCTCTCCTCAAAACCAGTTCCGGATGATGTGTCAGAAAGTCATCGCACACAAGATGTTTGACCACGTGGTCCTGGTGTTCATCTTCCTGAACTGCATCACTATTGCTTTGGAGAGGCCAGACATCCAGCCCTATAGCACCGAGCGTGTGTTTCTAAGTGTctccaattacattttcactgcGATTTTCATTGCTGAAATGACAGTAAAGGTGGTGGCTCTGGGTTTCTGCTCAGGGAAGGACAGTTACCTCCAGAGCAGCTGGAATATCTTAGATGGAGTCTTGGTCTTCGTCTCCATTGTGGACATCATCGTCTCCCTGGCCTCGGCTGGTGGGGCCAAGATCCTTGGCATCTTGAGGGTCCTTAGGTTGCTGAGGACCCTGCGACCCCTGAGGGTCATTAGCCGAGCTCCAGGGCTGAAGCTGGTGGTGGAGACGTTAATTACATCACTGCGGCCCATTGGCAACATCGTTCTCATCTGCTGCGCATTCTTCATCATTTTTGGGATCTTGGGTGTCCAGCTGTTCAAAGGCAAGTTTTACCACTGTGACGGATTGGACACGAAGAACATCACCAACAAATCAGACTGTCTGGAAGCAAACTATCGCTGGATACGGAGGAAATATAACTTTGATAATCTGGGACAGGCGCTCATGTCACTGTTTGTCCTATCATCTAAAGACGGCTGGGTTAATATCATGTATGATGGCCTTGATGCAGTGGCAGTAGACCAGCAGCCCGTCCGCAACCACAACCCCTGGATGCTGCTATATTTCATCTCCTTCCTGCTGATCGTCAGCTTCTTTGTACTGAACATGTTcgtgggggtggtggtggagaACTTCCACAAGTGCCGGCAGCACCAGGAGGCTGAGGAGGCCAGGAGACGTGAAGAGAAGCGGCTGCGGAGGCTGGAGAAAAAGCGCAGGAAAGCCCAGCGACGGCCATACTATGCAGACTACTCTCCCGCTCGCCTCTACATCCACACAATGTGCACCAGCCACTACCTGGACCTCTTCATCACCTTTATCATCGGGATCAATGTCGTCACCATGTCTATGGAGCACTACAATCAGCCCAAGTCTCTTGAGGAGGCTCTGAAATACTGCAACTACGTCTTCACcattgtctttgtctttgaGGCCCTGTTGAAATTGGTGGCGTTTGGCTTTCGACGATTCTTTAAAGACAGATGGAACCAGCTGGATCTGGCCATTGTTCTTCTTTCCATAATGGGAATTACTTTAGAGGAAATTGAGATTAACGCTTCTCTGCCTATAAACCCGACCATCATTCGCATCATGAGAGTGCTGCGGATCGCAAGAGTGCTGAAGCTGTTGAAGATGGCGACGGGCATGCGAGCTCTGTTGGACACCGTAGTGCAGGCTTTACCACAGGTAGGAAATCTGGGCTTGCTTTTCATGCTGCTGTTCTTCATCTACGCTGCACTCGGggtggagctttttggcaaacTTGAGTGCAACGACGACAACCCATGTGAAGGTCTAAGCAGACATGCCACGTTTGAGAACTTCGGGATGGCCTTCCTGACCTTGTTCAGGGTTTCCACGGGAGACAACTGGAACGGCATCATGAAGGACACTCTGCGCGAATGCAGGACAGAGGACAGGCACTGTCTGAGCTACCTGCCGCTCATATCGCCCATCTACTTTGTGACCTTTGTACTGATCGCGCAGTTTGTGCTGGTCAACGTAGTGGTGGCTGTGCTCATGAAGCACCTGGAGGAGAGCAACAAGGAAGCCAAGGAGGATGCGGAGATGGACGCCGAGATCGAGATGGAGATGACCCGCCGACTCAGCACTGCCTCGGGGGGAAGGCCTCCCGGACCTGACAGCCGTGCCACCTATGTGGGGCCGAGGCCGGACTCCCCTGGACAGgaCGAGGCACTCTACGGACCACAGGAGAATTTCCTGTCCGTGAGGAAGGTGTCTGTGTCCAGGATGCATTCCCTGCCCAATGACAGCTACATGTTCCGTCCTGTGAGGCCAGCTAACGCCCCCTACCCCTTACCGGAGGTGGAGCCCTGTGAAAGAAACTCACAGTTAGGCTCTGTCACCTCAGTGAACTCCCAGCTTGCTGAAGGAGACTGCCAGCTGCGAGTCCCGGTGTCACCCCCTCCGACCAGCCCCGTCTCCCCCACCTCCAGAAACGGCAGCTTGTCCAGGATCGCACCCCCACGTCTCAGCCCCTGTTCCCCCAGCTTCAGCAGACTGCTCCGGAGACAGGAGGCCATCAAGACTGACTCAATTGACATGCAGAGCAGCGACACAAAGGACCACCTGGAGAGTCAGTGCAGCGACAGCCTACAGGGTAGCCTGGCTCTGGCCGTGCCCCTCATCTCGGCCCCCAGCAGCCCCCAGCGCTCCCCACTGCTCCCCCGTGCCCGTACCTCCAGCGTTCATACCCACCGGCAGGTATACAGCCAGCACAGCATCCCCAGCCGGACCTCTAGCCAGGCCAGCAGCAGCAACCACAGCAACAGCGCCAGTGCCAGCCCCGGCAGCTCCATGTTTGACTCCATTGACCCAGCGGACGAGGAGGTGCGGCACATCAACAGCTCTGCCAAAGACTGGGGCGGCCCGGCCGAGGTGCGcagccactctctctctccctacacCACCCCCAGCATCCAAGTCCCCGTCCCGCTGAAGAACTGCAGCAGTACCACCAGCCTGGCGGGCTCCACCACCAAGGACAAGGACCTGAAGAAGTTCTACAGCGTGGACACCGAGGGCTTCCTGGCCAAACCCTCCTGGGCCGATGACCCCCGCCGGCACTCCATTGAGATCTGCCCCCCCATCGACGACGATTCGGCTTTCGAGCAGCCCGAGGACGAGCAGAGCAGTCCCCCGGTGCGGGGCCCCTCGACGTCTCCCTGTGGCCTGACTGCCCAGCGCAAGAAGAAGATGAGCCCCCCATGCATCTCTATAGACCCCGCCCTCGAAAACGAGCTCTCGGCCCCCGCCGCGTCGCTCACCAAAATCTCAGAGAACAGCATGCTGCTGCGGAGAAGGACGCCCTCCTGTGAGTCAGCGCTGCAGAGGGACTCTCTGGACCTGCAGGAGCCCCAGCCCCCCACTGAGCCCCCCAAAGCAGAGAGGCGCCCCCTGCCCTCCTGCCGGAGCGAGAACCTCTCTGTCCCCCAATTCTCCTTCGATCAGTCGGACATCAGCTCGCTCAGCAGCATGTCGGACATTCTCTCAGACAGCGACCAGTCCACCCACTCCTGCTCCATCTGTTTCGAGCCCCAGCCCGAGGGCATGGCAGGCTCAGAGCAGCCGAAACTGGACCACTTGAGTGTCCAGCCCAACGAGGGTTCGGGGAACAGCAGCCAGACTTTGCTCAGCATCAGCAGGAGTCCTCTGAGGAAGAGGGGCCTGGTCCGCATGGCAAGCACAAGGGACGAGGACACTGACAATTCTGTCGCGTAG

Function

symbol description
cacna1h Enables low voltage-gated calcium channel activity and scaffold protein binding activity. Involved in several processes, including cation transport; positive regulation of acrosome reaction; and primary alcohol biosynthetic process. Is integral component of plasma membrane. Implicated in childhood absence epilepsy and primary hyperaldosteronism.

NR:

description
PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1H

GO: NA

KEGG:

id description
K04855 CACNA1H, CAV3.2; voltage-dependent calcium channel T type alpha-1H

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018502 True 4845 mRNA 0.57 25 12836224 12878881

Neighbor

gene id symbol gene type direction distance location
AMCG00018501 LOC107376712,LOC106516530,LOC103393184,LOC108242978 coding upstream 17081 12784691 ~ 12819143 (+)
AMCG00018500 NA coding upstream 98156 12714107 ~ 12738068 (+)
AMCG00018497 epn2,LOC107738009,LOC104959799 coding upstream 187344 12619360 ~ 12648880 (+)
AMCG00018492 NA coding upstream 296957 12530558 ~ 12539267 (+)
AMCG00018487 traf7,LOC107719978,LOC107601260,LOC107590399 coding upstream 523410 12293977 ~ 12312814 (+)
AMCG00018503 znf598 coding downstream 6306 12885187 ~ 12904501 (+)
AMCG00018507 drg2 coding downstream 55715 12934596 ~ 12943295 (+)
AMCG00018508 NA coding downstream 79831 12958712 ~ 13031788 (+)
AMCG00018506 NA coding downstream 154125 13033006 ~ 13043686 (+)
AMCG00018511 NA coding downstream 208580 13087461 ~ 13088726 (+)
G116725 NA non-coding upstream 135459 12700501 ~ 12700765 (+)
G116667 NA non-coding upstream 516736 12287569 ~ 12319488 (+)
G116654 NA non-coding upstream 557384 12278430 ~ 12278840 (+)
G116653 NA non-coding upstream 562728 12272589 ~ 12273496 (+)
G116603 NA non-coding upstream 694089 12139002 ~ 12142135 (+)
G116728 NA non-coding downstream 705 12879586 ~ 12883914 (+)
G116765 NA non-coding downstream 26219 12905100 ~ 12958552 (+)
G116769 NA non-coding downstream 54059 12932940 ~ 12934564 (+)
G116775 NA non-coding downstream 168236 13047117 ~ 13048094 (+)
G116790 NA non-coding downstream 250857 13129738 ~ 13215352 (+)
AMCG00018498 NA other upstream 224345 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 315893 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 336170 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 865446 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1580059 11252359 ~ 11256165 (+)
G116832 NA other downstream 374462 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 429017 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 1119028 13997909 ~ 14022806 (+)
G117033 NA other downstream 1167378 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 1262496 14141377 ~ 14145995 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000092 cacna1hb coding NC_007112.7 CM002885.2 8304904 ~ 8404005 (+)
grasscarp (Ctenopharyngodon idella) CI01000300_00226653_00303160 NA coding CI01000300 null 226653 ~ 303160 (+)