AMCG00018506


Basic Information

Item Value
gene id AMCG00018506
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13033006 ~ 13043686 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018506
TAGTGGAAAAAGACACTAGACCAGAGCCCGGCATTGTACGCCTACATCAGTCTGCATGACGAGCAGCATTTTGATTatctttctgtttcagttaaagtACCCCTGCAACAATTTCTATTGTCAGCCTATTGCAGCAGTTATCGGGGTGGAGGAAATCCAAGGACATGATGACATTGccgtttgtatttttcttttcctatttTCCAGACGATTTGTGCATGTCTGAGTGATCGCCCATCCCCAGCTATGATCTTCGGAGACGTTTTTTCTTCGCTGGCGTGCTTCGGTGGAATATAATGTTTTCTTCGACTGTTAAGTGTTGGGTTTAGCGGTTGCTATGGATGAGCAAAAAGCGTAAATCAGTTTCTTTGAGCACGCGCGGAATGAGGAGCATGCGCGTTTGTGCGGCTGGGTTACACGAGTTTATTTCTGCTCCTCGTTTTTCTGCAAGTGGCTTTAAATAAAAGCGGTATATTGTAAATATCAATACCGAGTTGTTAATCTAATTACCGGACTTAGATCCGTCGGCGGCTGTCCGGTGGGGTTGTACTTTCTTGCCGCGAGACTTGGCAGTTAACTGCCGCTACGCAAAACACATTGTCAAGCCGAGGATAACGTTACGACTTGTTACATCTTATATATGGTGTGTTTATTGCCAATATTTATGAccgttattgttattattagcattTGAATAAATACGACTTGCAAACGTTTGTTGGTGCTCAGGATGTGTGGTGACTAAGTCAAATTCATTTCAGTTTCTATCAGGGTAGCTATACGTTTATCGTGACTTCCACGCAACAcaaaaaatagatgttaaaaTGTCAGCGAGTGTAAGTATAATACTGGAGGAGCGAGTTGTTTCCGAGTCGCCGCAGTAGCAAAGCGCAGTCTTTAGTAGCCCTGTCGTTCAGAAACAAAGTGCACGATTGTTTGATGCCCCAGAGAAACTGCTGGCATCGCGTCACTGTCAATCAGTGGTTCCACGCAAAGCCTGTGAAATATGGGAAAGAAATACCGGTTTTTTTAAGCGCCCTGTATAATCTAGGAAAATGGCAGCAAGTGGCTATACCGACCTCCGAGAGAAACTGAAGTCCATGACCCCCCACAGAAACAAAGTTTCAGAGCAAAGCAATGGCCGCAAGCGAAAGTACCACGACTCGGAGGAGGACTACAGCGACTACGAAGAGCAGCGAGAGGTGGAGGCCCGGAAAGTTAAGACCGGCATCCGGCAGGTGAACATCTTCAGCCCGGAGGACTGCGCTCTGATCGAGGCCAAGATCGACGAGGTCGTCTCGAATGGGGAGAAGGGCCTCTATCGGGAGCACACGGTGGACAGGGCGCCCCTTCGGAACAAGTACTTCTTTGGGGAAGGCTACACTTATGGATCCCAGCTGGAAAAGAGAGGACCGGGGCAGGAGCGGCTCTACTCTAAAGGGGAAGTGGACGACATCCCCAACTGGGTCGACGAGTTGGTGATAAAGAAACTGGTTGCCAACCGGGTGATCCCCGAGGGCTTTGTCAACAGCGCCGTCATTAACGACTACCAGCCCGGAGGTTGCATCGTGTCCCACGTCGACCCGATTCATATCTTCGAGAGGCCCATCGTGTCCGTGTCTTTCTTCAGCGACTCGGCGCTGTGTTTCGGCTGCAAGTTTCAGTTCAAGCCCATCCGAGTGTCCGAGCCGGTGCTGTTCCTCCCGGTGAGGCGAGGCAGTGTCACTGTGCTCAGTGGTTATGCAGCAGATGAAATTACCCACTGTATTAGACCACAGGATATCAAGGAAAGAAGAGCTGTCATCATACTGAGAAAAACAAGACCTGATGCACCAAGATTGGAAACAAAGGCACCAAGTAATGCAGTTCCTCCTGTTTCCACTCCTGAAAGTCCTCCAGTATTAAAACCAAAGCGATCTCATCGGAAGGCAGACCCTGATGCAGCTCACAGGCCACGCATATTGGAAATGGACAAAGAAGAAAACCGGCGCTCTGTTATTTTACCGAGACACAGACGAAGGAGTGGCTCGAGCTCGGAGAACCTTTGGAGGAGATCCTATGAGGCCGCAGGCAGCAGCGACGAACCTGACGATAATGCCAGCTCGgcaagaaaagtaaaaatgagACGCCACTGAGGGAGGCAATCCAAACAGGGACACGTATTCTCCAAATATAGATAGCTGTTTTGGAGGCTTCAGTCTTTTCTTTGCATGCAGGTGTAGAAGTAGTTGGTATACATCAGCTACAAAGTtggccacttttttttttttttttgctggttgtggctggagagggagag

Function

GO:

id name namespace
GO:0035553 oxidative single-stranded RNA demethylation biological_process
GO:0006397 mRNA processing biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:0007283 spermatogenesis biological_process
GO:0001666 response to hypoxia biological_process
GO:0016607 nuclear speck cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0035515 oxidative RNA demethylase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10767 ALKBH5; mRNA N6-methyladenine demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018506 True 2299 mRNA 0.48 5 13033006 13043686

Neighbor

gene id symbol gene type direction distance location
AMCG00018508 NA coding upstream 1218 12958712 ~ 13031788 (+)
AMCG00018507 drg2 coding upstream 89711 12934596 ~ 12943295 (+)
AMCG00018503 znf598 coding upstream 128505 12885187 ~ 12904501 (+)
AMCG00018502 cacna1h,LOC108430011 coding upstream 154125 12836224 ~ 12878881 (+)
AMCG00018501 LOC107376712,LOC106516530,LOC103393184,LOC108242978 coding upstream 213863 12784691 ~ 12819143 (+)
AMCG00018511 NA coding downstream 43775 13087461 ~ 13088726 (+)
AMCG00018510 llgl1,LOC107674688,LOC107592402 coding downstream 56917 13100603 ~ 13123386 (+)
AMCG00018509 NA coding downstream 118971 13162657 ~ 13166145 (+)
AMCG00018514 NA coding downstream 144237 13187923 ~ 13196197 (+)
AMCG00018516 bud31,LOC106595689 coding downstream 191515 13235201 ~ 13237686 (+)
G116765 NA non-coding upstream 74454 12905100 ~ 12958552 (+)
G116769 NA non-coding upstream 98442 12932940 ~ 12934564 (+)
G116728 NA non-coding upstream 149092 12879586 ~ 12883914 (+)
G116725 NA non-coding upstream 332241 12700501 ~ 12700765 (+)
G116667 NA non-coding upstream 713518 12287569 ~ 12319488 (+)
G116775 NA non-coding downstream 3431 13047117 ~ 13048094 (+)
G116790 NA non-coding downstream 86052 13129738 ~ 13215352 (+)
G116882 NA non-coding downstream 322954 13366640 ~ 13367028 (+)
G116941 NA non-coding downstream 622337 13666023 ~ 13691367 (+)
G116975 NA non-coding downstream 796030 13839716 ~ 13839971 (+)
AMCG00018498 NA other upstream 421127 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 512675 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 532952 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 1062228 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1776841 11252359 ~ 11256165 (+)
G116832 NA other downstream 209657 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 264212 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 954223 13997909 ~ 14022806 (+)
G117033 NA other downstream 1002573 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 1097691 14141377 ~ 14145995 (+)

Expression


Co-expression Network