AMCG00018512 (LOC107674657,LOC107592418,LOC107737959)


Basic Information

Item Value
gene id AMCG00018512
gene name LOC107674657,LOC107592418,LOC107737959
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13160357 ~ 13187749 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018512
TGAAGACAAGGCGCTGAATTTGTTTATATGAGGTGCTAACGTGTATGTGAGTAGAGAGAAAATTATACTGTAAAGAGGACGGCCACACAGAAACACCAGCTGTCATTGTGGTGGAGAGAGTCTTCGACGCCATGCTTCTTGGATGCCATAGGTCCTCCATGCAACAGCAGACGCTCGTACTTGTGGGATGCTTTACCACACTGGAAGGTCGTTACTCCGCTTTGGATTAAACGTGACAGTTCACAGGAATCGCAGATTGCTCTGTAGCCACATCTCTGCTGACATGATCCGAAGAACTCAGATCAAGAAAGTCCTCTGCGTGGCCGAGAAGAACGATGCGGCCAAGGGGATAGCACAGATCATGTCCAATGGGAGTATGAGAAGGaGAGAAGGTCACTCAAGGTTTAATAAAATCTATGAGTATGAGTATCACTTGTTTGGACAGAATGTAACTGTCTCAATGACCTCCGTCTCGGGACACCTTTTAGCACTGGAGTTCAAAGCACCTTTTCAGAAGTGgCACAGCTGTAATCCAGTCATGTTATTTGATGCAGAAGTGGAAAAGTATTGCCCCGACACTTTTGTGGACATCAAGAGGACTCTGGAGAGGGAGGTGCGCCAGTGTCAGGCTTTGGTCATCTGGACTGATTGTGATCGGGAAGGAGAAAACATTGGCTTTGAGGTCATTGATGTCTGTAAAGCAGTGAAGCCAAACGTGCAGGTGTTCCGAGCTCATTTCTCCGAGATCACCCCCAACTCCATCAGGAGAGCCTGTGAAACCCTGACTGAACCTAACCTAAACATCAGTGACGCTGTGGATGTGAGACAAGAACTGGACCTTCGAATTGGGGCATCGTTTACCAGGTTCCAGACGCTGCGCTTACAGAAGATATTTCCCACAGTCCTCGCTGATCAGCTCATCAGCTATGGCAGCTGTCAGTTTCCCACTCTGGGCTTTGTGGTGGAGAGGTTTAAAGCCATTCAGGCCTTCATTCCAGAGACCTTTTATAAAATTACAGTCACTCACCAGACtgatgaggaggaggtggaTTTCAGCTGGAAAAGACATAGGCTCTTCAACCACACTGCTTGTCTGGTCCTGTACCAGATCTGTATGGAGGATCCCTTAGCCACCGTTACTGAAGTGAGTACTAAACCGAAAAGCAAGTGGCGCCCTCTACCTCTAGATACAGTTgaaCTTGAGAAGCTAGCTTCCcgtaaactgaaaataaatgccaaGGAGACTATGAAAATAGCAGAAAAGCTGTACACCCAGGGGTTAATCAGCTACCCCCGTACTGAGACGAACATATTCCCCAAAGATCTGAACCTCACCTCCCTGGTGGAGCAGCAGACACAGGACGTCCACTGGGGGCCATTTGCTCAGGGCATCCTGGAGAGGGGGGGGCCTACTCCCCGGAACGGGAAAAAGAGTGACCAGGCCCACCCTCCCATTCACCCCACCAAGTACACCAGCAGCCTTCAGGGAAACGAGCAGCGCTTGTACGAGTTCATTGTCCGCCACTTCCTGGCATGCTGCTCCCAGGATGCACAGGGGCAGGAAACCACTGTCGACATTGACATTGCCCAGGAGAAGTTCTCGGCGCATGGCCTCATGATCATTGCCAGAAACTACCTGGACGTTTACCCTTATGACCGGTGGAGTGCTAAGGTTATCCCAGTGTATGAGCGAGGGGCCCAGTTCCAGCCCACAGCCATCGAGATGGTGGATGGGGAGACCAGCCCTCCCCAGCTGCTCACAGAGGCAGATCTCATCTCTCTGATGGAGAAGCATGGCATCGGCACTGATGCCACACATGCTGATCACATTGAAACGATCAAGTCGCGTATGTATGTGGGGCTGACCGCAGACCAGAGGTTCCTGCCTGGAGAGTTGGGCATGGGCCTGGTGGAAGGCTACGACTCGATGGGCTACGAGATGTCCAAGCCTAACCTGAGGGCAGAGCTGGAAGCCGATCTCAAGCTGGTCTCGGAGGGCAGGAAGGACAAATTCACTGTGCTGAGATACCATGTGGAGAAGTACAAGCAGGTCTTCATTGAGGCCGTGAGGGAGGCAAAGAAGTTGGACGAGGCATTGTCCACCTATCTGGGCCAGGCCCTGGAGTTTACCCCGCAGGACGAGATGGCCCTGGAGCTACCCCTGCCTGTGAGGAAGTGTCCGCAGTGCAGCCGGGACATGGTGCTCAAGAAGAAGAAGGACGGGCGAGGGATGTACCTATCGTGTGTGGGTTACCCCAGCTGTAAGGCAGCCCTGTGGTTCCCTGACTCCGTCCTGGAGGTCAGTCGAGACGAGAGCATCTGCCCTACGTGTCGGCCCAACCCTGTGCACAAATTGAAATTTAAATTCAAGCGAGGAAGCCTCCCTCCCATGATGCCCCTGGAGTTAGTGGGCTGCATTGGCGGCTGCGatgagacactgagagagatcCTGGACCTGAAATACCTTAGGGGAGGGAGAGCAGGGGCTCAGCCAGCCAGCAACCCTCCCTCGGGCAGTTACCTGCGGGACAGCCAGTCCCAGAACCAGCCTAGAGTTCAGCCGCCACCCCGACCCAGACCAGAGAGCAGGAAACCAGTGGCCTCCGTCACCAGCTCCCCCTGGGCATCGCATCCACCAGCAGTAGGAGGAAGTGATGTAACGGTCTGTAACTGTGGGCAAGAAGCCATTATCTTAACTGTACGCAAAGAGGGACCCAACCAAGGCCGGCAGTTCTACAAGTGTAACACGGGCAGCTGCAACTTCTTCCTGTGGGTGGACCAGCCAGAAGAACGAGGCGTGGGAAACAGGAACGCGACCTCCTGGACCCCTCAGCCCCCCCGGCCCTCTGTGGGGTTCGGTGGAAGCTCAGGGTCTGGCTCTAGTGGTTTTTCACAGCCCAGTGGCAGCAGCAGACTGGGCAGCGGCGACGGGGCGGCTACGCTGTGTAAGTGTAACGAGCCGGCTGTCACACGGACAGTGATGAAAGACGGTCCGAACAAGGGCCGTACCTTCCACACCTGCCCCAAGCCACGGGAGCAGCAGTGCAGCTTCTTCCAGTGGGCAGATGAGAACATGCCACCAGGGGGCTTGGATTCTGTGCCTCAACTTGGGGGACAGAAGAGCAGAAGGCCGGGAGGGGAATCTTACAAAGCCCCTGTGGCCAAGAAGCAGAGAACATGTGGAGTGTGCCACCAGCCAGGCCACACCCGGACCACTTGCCCACAGAACAGTGACAGATGACCGCATATGACCCATCCTTGCCCTGCTTTGCTCAGCTCCCCAGACTCTTAGAGTGCATGAAGTTaccctgtttttttatttaaacagtattGCAGATCTGCTTTTAGCCTCATGAAATCTGAACAATGTTAGGACTTTTAAATCGATTGCATAGAAATGAAACCATTTCCAAACCTTCCATCTCAAAACAATCCATCGCATTTTGGATGGAGCTACAGTGAGGTCAACACATCTGATTCCGAGGGTTTGTGTAGTGGTGGGAAAAGCAGGAGGTTCAACTTTCAGCTACAATGGTGGGATGTTCTGTAAAAGGCCTTCCTAATAAGCTGAATAAGGCTGTTACTTAATTAAGACTGTTAATAcgaaatatatatagtttccaAGTGCATCAAACCAGAATACCCAAATGGTTATGATCAGAATGGAAAGATGCAATACCCTCATCATTGTTGTGGtatgtccccccaccccccgaaCTCCCCCAACATGTGCAGTGTTGTGGGGTTTCAGGGATTTGTGATCAGTTACAGATTACAGCATGTGCAAGGTTTAAACCCAGACCCTTTATTTTTATCCCAGCATTTTCCAAAATAAGCCATCttaatttttccattttattcttgtttttagaATTGATTGATGACGGATTCCTCCTTCCCACCCATCTCACTGTGATCTATTCATAAAGACAAAAAGCTCTTTAGAGGGTTCTTGTTTCCTATCACAGTGAGATGAGAATTATTTACACAACTCCCTTCTTGCACCACTGAGCTCTCTGAATACAAGTTTACAGCCAGGAGTAAAATTTATAAAGTAGTTTGGAacactgtaaatactgtatattttatattggtGTGCATCTTTTATATCAAatcttaataaatgtataacagaACAAGAGTAGAAGACCTTTCTTAAATACTGGCAGTTCAATTATAGTAAACTAAATGTAGAAAGAGGCAAATCtatatagtaaaataattataaattaattactatGTTAATTACTAGAATTACTACCTGCAAAAAATATGCTGGAATCATTCACAACATAACAAGGCTAAATCATGGGGATACCTAGTTAGGGGGGATGCTAATAAAATTGGTATTCTTCTGAAGACCAGCTAAGAACAAATGTATAgatcttttatttatgtatttgtaattaaaatagcaAGTTTGAGAAGGTaacctatataaaaaaaaaaaaaacaataattgaagAGGGGTTGATTAAAAGAAACAAGcatttttgtcaaataaatacatctttattgAAGTTCTTAAAATACTCATTTGTTTATAGAAATATGAACATGGCGCACAACAACAAGCTGGGCGTACCGTCCCATCCTTGCATGAATGGGATCTTTAGTATTCCAGATCACCGCAGTGCAACACCCTTTGCATAGAACAGTGTTTGGCAAAGTGCACTAAGTgttgacataaaaaaatattacatttatgtgGAAGAGAAGAGACTGTCATCTAGTattcaatacatacatagaaaggaaaaaaaatgtaatttaataaagaaaaattatgtacacatttcaaaatactaTACGTCTGTGCCCCCCTCCCCCGGGTTGATTCTGCAGTATCATTCAGATGCCAGAGGTAGacacagtataatacagttCAATCAAATTCATCTTatccaaaaatgtaattttcatttcataaataacagtaaatgtgTAGTCTGCTTTTTCACAGATTCATCTTGTATGAGGTTTTTGATTAAATCGgtagaaaaatgtaaaagtgcaacacaaaaatacagtgggttctttaaatgacaaaataagttTTTGTAGTagcaaatgtataatgtatgtttatCAGTGGGAATAACGGTATACTGTTTTACTATTTGTCTGCATTATTCTTTAATACTTCCTAGAGTAAGAATAACTCCCTATTCAAAAAGCATTACTGAAAATCAAGACTGCAATTGAAAGAATATGTTCGTCTTAGCGATTACTAAGCATAGGCATAATAAACAATGTGTTCGTCGACAACAAAAGACTCGCCCTATAGTATTCATGTTTGAAGCAGTATCTCTGGCTCAGACACAGCGCAGTACAGCGTAAACCCAATGTCATCAATTTCCTCTTCTGAGCAGTCCGACAGCAAGTTCACCACCTTGTTGAAGTAGCCGGGCAGGCAGCCTTGCTCCAGGTAGCCAATGAGCTCCGAGATCACTTGCTGAAATCGGTCGGCGAAAGCAGCTTCCGTCCAATCCGATTCCTTCTCGCTCAGGTGTAGAATGACGTTAGCCAGGTGCCTGCCGGTCAGCTTCCTGAGGGCCGGGCAGTCTCTGCACACCGCCTTGAGGGTTTTCAAGCAACGTTTTCTGACCCCACAGTCAGCATCATCCAAATCTGCAAGCTTATTGGTCTCGGAGGTGTAAAAGCTTTGGTACCACAAATTGTCAAAGTTTCCAGTGACCTCTAGCTGCGCTGTGAGAATGACGTCGTTGACAATGATGGTCGGCAAGATGTTAATAAACAGCTGGCCGTGCTCACTGTGAACTTCAAGTTTGAGTTCCTGGGAGCCCATCACTGGCCTGACTGTGCACTCCAGCATGCCATCCAGAGCAGGCCAGTTCATGGATTCCATCACGGTTTTGTTCAAAGTGTTAACAAGCACCTTAGAAGAGAGGTAGCCCCCAATAATGAATTTGTCCCAGAAGCTCCTACCGCGAGGGAAGTATTCCAGGTTTGTCCGCCGCACCATCCAAAACTGGGGGTTGCTCAGGATGGTCTCCTCTCCTGGAATGAGGGTCCAGAACTTGTCCTCGATCTGCAGGGGCACCAGGAGACAAGCGTGGTTGGCTGCCACCACCTGTAGACCGTCCAGCAGGGAGCCACCCAGGTGCATCTCTCCCAGGGGCATGTCTGGCTGCTTGGCACGGAGGAATCCCTGGAGCTCTATGCAGATCTCCAGGGCCTGCTGTTTGACGCGACTGACATCGTCTTCAGACAGAGCCACGTGATTCTGGTAATACTGCACCAGTTTCTCTTGAAGAGTGACGCAGAGCTGAACACGTTTGATTTCAGGTTTCAGCTTCTCTGACACAGTTGAGGGCTTTGGGCCTTctgTGCTTTGCTGGCAGCCGTGAGCTGTTTGATCACCACACCCTCCAAGCCCTTCCTCAGGAGCTGTGGCGAGGCGCTGACCAGGCCCAGCTCCTCCCAGCCCTCTGGAATGCTCTTGTCTGGCTTCTCATCATCAGGGGGACGGCCAGCTCGGTCAATCAGACGCTTCACTGCCAGTGTGGCTATTCCCAGCACTGCTGCTCCCCCTACCCCCAGCACCAGCCGGGCATTGGCCAGCAGGAAGTCCACCACTGCTGCGATATTGGTTTCCCCTTTGCGCTTTCCACGTTGCTCCATTATTCCCTCAAtcttcccagcagcccctTCTTTCCGTCCTTCCTTTTCCATTCTGTCATGCACCCCGGAGCTGGTTACCTACAGCCAACCAAACCGAAAACACGGGCCTGCTGGTGACACTTGGTTGGGCCAATCGCTGCTCGCAAACCTTGTATTACAGCGGCATCTGAAAATAGGACTGGCATCGCTCTGGGAGGGATTTAAATAAGAAAGGAAGGGCATGTAACCAAATGCAAACCTGCAACCCGGAAGGTCGTGTTC

Function

NR:

description
PREDICTED: DNA topoisomerase 3-alpha-like

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0005694 chromosome cellular_component
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03165 TOP3; DNA topoisomerase III

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018512 True 6906 mRNA 0.48 23 13160357 13187749

Neighbor

gene id symbol gene type direction distance location
AMCG00018513 flii,LOC107703428,LOC107674686 coding downstream 512 13138873 ~ 13159845 (-)
AMCG00018504 LOC107592748 coding downstream 225919 12929748 ~ 12934438 (-)
AMCG00018505 NA coding downstream 236890 12914014 ~ 12923467 (-)
AMCG00018499 b9d1,LOC107737762,LOC107674617 coding downstream 505118 12648878 ~ 12655239 (-)
AMCG00018496 NA coding downstream 585845 12570888 ~ 12574512 (-)
AMCG00018519 NA coding upstream 15944 13203693 ~ 13212595 (-)
AMCG00018517 shmt1,LOC107674655,LOC107581728,LOC107737723,LOC107720052,LOC108257064 coding upstream 26843 13214592 ~ 13223710 (-)
AMCG00018518 NA coding upstream 39402 13227151 ~ 13234684 (-)
AMCG00018521 NA coding upstream 51061 13238810 ~ 13245731 (-)
AMCG00018524 NA coding upstream 384617 13572366 ~ 13578310 (-)
G116784 NA non-coding downstream 113764 12989436 ~ 13046593 (-)
G116750 NA non-coding downstream 275935 12879665 ~ 12884422 (-)
G116749 NA non-coding downstream 283594 12874915 ~ 12876763 (-)
G116672 NA non-coding downstream 861646 12295461 ~ 12298711 (-)
G116619 NA non-coding downstream 1039750 12119808 ~ 12120607 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding upstream 143142 13330891 ~ 13342748 (-)
G116883 NA non-coding upstream 178825 13366574 ~ 13367055 (-)
G116918 NA non-coding upstream 312969 13500718 ~ 13502497 (-)
G116931 NA non-coding upstream 340947 13528696 ~ 13534836 (-)
G116949 NA non-coding upstream 432474 13620223 ~ 13620432 (-)
AMCG00018490 NA other downstream 869813 12287568 ~ 12290544 (-)
G116577 NA other downstream 1249021 11911014 ~ 11911336 (-)
G116428 NA other downstream 1957469 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 2013417 11088174 ~ 11146940 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 2076577 11061628 ~ 11083780 (-)
AMCG00018522 NA other upstream 65336 13253085 ~ 13257250 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 457619 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 1054796 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 1315654 14503403 ~ 14520875 (-)
G117377 NA other upstream 1548389 14736138 ~ 14738312 (-)

Expression


Co-expression Network