AMCG00018514


Basic Information

Item Value
gene id AMCG00018514
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13187923 ~ 13196197 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018514
CAGCTCCGTCTTGAGATATTTTTTGTGTCGGAGCTTTATTATATAGAAAATGCGAATACCTGAAGGACAGAACAATAACCCGTTACTTCCTTGTCAGGCTAAGTAGTCATATGTGTAAAAATGGCTGCAAAATTGTAATGCTTGTTTCCGATACTGATAGAGAGGCACTATTTCTCCGGCCGTATCAGCTATCCACTTATTCTCATGCTTTCTGGAGATCAATCTGAATGGAAACGAAACTGCTCTTTTTTCCGTGGGACACTTAAAGGAACTTCATACATCCTGCATCCGGCAAGTGACTGACTTTACAGATGCTGTGATTATGCTTTGTTAATTGCCTCGCTAGTGTTTGTTATTGACAGTCGTGTTAGCAGCTGTCGTATttggggatttaaaaaaaaaatacatatgttaaatAATAGCTAGGTAGGCTGGGGTTAATATCCGATGGAGCCGACAAAAAGGGAAAAGCAGAAACGattactattttgtattaagtaaTTGATTGAGCACGACTTTCGGTATTGAGCTGGGTTTTATGTTCTTGTTTACACTCAAGGAGCTGACTCACGAAATACGTATAtggattattttacaaataccGTTAGAGTAGTCTGCGTTATTATTTGATCCTACATAATCCCCATGTCATTctcaaaaaacagaaaatatgattGGCTCCCCTGACCTGGTGGCTTTTACAAAAGATGATGATTTTGGAGATACTTATGTAGATCCCTGCTTACTCCCAGAGGAGTTTTCAGTGGTTCTGTTTCCAAATTCTGGAACTGCAAGTCCCTGGTCCAGGACTTCCTTTGCTAAATTTACCAAGGATTTTATTCTAATTTCCGAGTTCTCTGAGCAGGTTGGACCCCAGCCTTTACTCACTATCCCAGATGATCCCAAAGTTTGCGGCACCTTTGATCTCAACTATTTCTCCCTGCGGATTATGTCTGTGGACTATCAAGCCTCTTTTGTTGGGCACCCTCCAGGCTGCGGCTACCCCAAGCTTAATTTTGTGGAGGACTCAAAAGTTGTGCTTGGGGACTCCAAAGAAGGAGCTTTTGCCTATGTCCACCACCTAACCCTCTATGACCTGGAGGCTCGGGGCTTTGTCAGGCCATTCTGCATGGCTTACATCTCAGCGGATGAGAATAAGATCATGCAGCAGTTCCTGGAGCTCTCATCTGATTTCTCCAAGGCATCAGAGTGCTTGAAAACTGGAAACCGTAAGGCATTTGCCAATGAGCTGGAAAATAAGCTGAAGGACCTGGAGTACACCAGGACTGTTCTCCACAAGGAGACTGAGCTGCAGAAACAAGCCAATGGCTGCTACTCCACCCAAGCAATAGAGAAAGCCAATGAGTTAGCCAATGTTGAAAAATCCATCTATGAACACAAAGATCTTTTGAAGCAGATCACGTCATACCCAAACAGAAAAATTAAAGACCCTGAGTTTTTGCCCTATGAATCTGACAACCCCACTAACCCTACTGACATTGACCAGGACCCAGCATGCAGTGATTCCAACCCTGAAGATCAGTCTGAAGACCCCAGCTGCACACGCAGGCCATCTTACACACCTCAACTTATTAAAGCCAAGTCTGCAAAATGCTTTGATAAGCGCTTGAAAACTCTCGAGGAGCTCTGTGATTTGTACTTTTTCAATCAAACAATGGATCAGCTAACCCACATTGAGAAGACTTTCAGAGGGGACCTTTGCTACATCTACACACACCAAATTGACCGAGCTTTGCTGAAGCAGCAGAGAATCACTAACTTCCTCTTTGAGGATTACAAGGAGTGGGAGGAAGAGGAAACGGAGAAACAACGCTATGGGAAGAAGCTGAATTTGATCAGTGACCTTCCCCCTCCTGATCCTGTCCTGTCCAGCCAGCCGCTCAGTTTGGATTCCTACACCTCCTGTGTGGAAACGGTGTCCATTAAAATGGACCAGGAATTGAGTGAGGATGGCCTGCAGGAAACGGAGCTGACGGAGTCCAGCCCTTGTGACATCACTCAGGACTATTCAGAAGAATGTGCTGATGGTGAAATGAAAGGGAGCTTGAGCAGTGGGGAGAGTATTGAAGTGCTGGGGACAGAGAAATCCTTCCCCTCGGAGGCCTCTCTGATTAAATCAGACAGTCAGGCTAGCCTCCAGGTGCATTATCAAGATGTGGTCAGGAGAAAAGCAGTGAGCAGGAGGGCAATCAGTGAAGACAGTATTGAAGTCTTAAGTACAACAGACACCATTATACCCGAGGACCTGAGGGCGTCCTACCCCAGCGCCATCCATGAAGAGGAGCCCGCTGGGGAAGAGGCAGTGTACGATCACTGCTCCCCCATTCTGCAGGAGGATGTGGACGTGCAGGAGGCTGGTGGGGATTCCACATGCTGTATTGGGCAGGACGGCCACATGTTCGAAGAGCCCTCCCCTGAGCTGGGGCAGGAGTGCAGTGACAATGGGGTGGTCAAAGAAGAGCCCACCTCCTGCCGCCAGGGGGACCCGGCCTTCCAGGTGGCCTTTTGCCTGGACGAGGAACCCTTTTCGTTAGGGGCTGCAGCAGGGCCTCCTCTGTATGAACTCAATCCCAACTACCTTTCAGATCATGTGTCCAGGCTGAATTTGGATGACTGCTCAGACAGCACCAGCTTCATGAGTGCCTCCACTTGCTCTGAGCAGGcctcctctcccttcctccctggCAACCCCGTCACTGTGAAGCACAAGAAGAAGGCGGGTCAGAGTGCTCTGAGGTTCATCAGGCAGTACCCCTTTGCCCAGCAGGCCATCTTCTGCCTGCTTAGTGGCAGGACACTAGTGGTATTGGGAGCAGATGAAGGATCCGTGAGGAAGCTGGTGAAAGCCTTATCTATCTTTGTACCCAACCTGGGCAAGTATGGTGAAAGCATCAAGCCATGGCTGACCTCCCCTTTCCAAATCACTGACCTGCAGAACTGGAAGCTCATTGGCCTGCACCGGGTGGCATCTCCCACAGGCTCCAGCATGCTGTACGCACTGAACCGCTACAGCCGCTACATCAGCATCCTGGACACGGACCACAAGACGCTGCGCTGTCCCCCCTACAAGGGCTCCCTGATCAGCAGGCTGGCCGACCATAGGACGCAGATCAAGTCTGGCAGCACCTACTTCATGCATGTGCAGAACATGCTGAACCAACTGGCCTCCAAGGCCTTCCTCTACACCTTCTGCCACCACCTCCACCTTCCCATCAGCCCCACGGAAACTGACGCGTGTGTGGCGGCGCGCAGGGCCAGTTTCCTGCAACATCACTTGGGCTTCAAGGATGAGGACGGGAAAATCGTGGAGTTCCTGTCCGGGCTCATCAAACAGTACTACCTACAGGGGCTCAGCAAGGGGAGCAGCCCCCCCGTGTTTGGCTTCAGTTATGTCACCAGCGTTTTGTATAAAATCTAGGCCTGAGCCCCACCGGCCGGATTGGGAAGCCCATGCTGTATGTACAGTTTTTTGGCAAAGATGAATGAATGTAACTTATTGGTTTCTTGTTTGagttttttctgtgttgtttgtgATTTGTCTAATAAGCCGAACACTGTCTTCACCCGTGCTGGTCGATTGCagggagaggaaaggagagaggggaaaaaaagataagTAAcagtttcaaaaatatatagatagttTGCGAATTTAAAGCTGTACAAAATTGATTCATAATCGTCCtgtcatttaagaaaaaataaaaaaaagccattCAAACAGCTTTTGCTGCTCAGGCAGAAGATATTTTTGTCAGTGCTGATAGCGGAGAGACTTTATTAGCATCGTTATGAACCTCTCTCAAAACAGCTTTAATTTTATCTGCTATTTtccaataaatatttgatcaaatatacTAATTATCCTAATGATGATAATCATAACTAATAATATGCAAACAGTGATGCTTCTTGTGCTGTAACTTACTCAATTTTAGCTTGTCCTGAAATCAGCAGCATTGAAAGCACAAGAGCTGCAGGCAAAATGCTGTTGGGCAGCGAGTTCTTCATAGAGGAGAATGTGGATTGGGATTGGGGCAAAGCCTGAAACTGTTTGACACCGGGCTTAAATCGACATCACAAACCAATGTGGTTCATTTGAAAATCTTGGACCTTCAAAAAACGGTCTTGGTATCATTTGGGGATTTGTGTTCATCAGCACTTTAAAAGTGGAGCATCACTGTACTAATATTGTGTGACCAAACTGATTTTGTTATCATGCAGATTAGAACAGCACaagtgaaactttttttttttttcattttaatgaatctgtttttctcatttcttgTGGATGGATTTAAGAGTGGATTGTGAAATTCCAAGACCTATATCAAGCTCTTGTATCAAGGCCTTTTTGAGCCCCAACAAGCTTCTTGGATCTTAAGGCCTTTGAGCTGGTCCTTTTTAAATCCACAGTGATCTGGATTTGAAAGGGCCTGCTTTTAAAATCCTGTGACAAATTATCTGATCTCTCAAAAAAGGATTGAATCATTGAAATAGTCTCCAGGTGCTTTTTGGAGAGGTCCGGCCTATACGAATTTGTCAGCCTTGTTTCCCACTGTAAAAATGCCATTTGAAAAGCCTTTGATAACAAGTTGCTGGAGCCTCTATACATATAAATGATATACTCTATATACACTGAATACTGCTGACCCCAGATGAGACACCCTGCCCTATTTAGTTTTCCTGTATCTAGGCAGACAGAAACAAGTTTGAAAGTCAGATAAGGACAGATTATATGTAGATTGGACTGTACTTTATCTTACCTGGCATTGAGAGTTTTGCTGTGCCATACCCATATCTGAAGGAGATCAATAGGCATGTTTTCCACACTAACATATATAGATGCAATCATGTATTGAGCATCACAGACAAAGCATTACTGTTTGGCTGCACATACACACCCCGTTTTTCAAATCAAGCCATTCAGCTGAACTGTGGAGCTTAAAATAATAGCATCTATACCAAATTCattaccatttcaggttatggaaaataaatgttatcaaTGGATGATACAAGAAGTAAATCCAGAGTCATTGTTTGTTGAAAGTGGTCCACTGTGCTTTAAGGAATAATTCACCTGATGCACTTTCACAGCATGGTCTTTATTCAGGCTACAATTAACCACATTACTAAAAGCACTACAAAGAAAAgccattaattaatatttcttcTTGCACCTTCActaaatgtgtacatttcattataaacattttaactaaTTGCTGTCTATATCGAAtcaactttcattttttttaaatctatgcaGAGCATGTACTGTATTGCAATCCATTGTTATCTCAGTACAATAACTGCCTACTAGACACTTGCTTATGTAATACTCAAATGAATttgacttatttatatatacctttttgttttaatatttcagattgtattatgtttttattttactcttcaAACAAATCTACAATGTAATGCTGTCAGCTGCTACTAGAATTTCCAATTAAACTGGACAAATTaaagacaataacaataatcataatagtaataatgttaaatacttttttttaagaaacatttttgtaacGTCTGAGATTAACAATGCTTATTT

Function

GO: NA

KEGG:

id description
K23611 SMCR8; guanine nucleotide exchange protein SMCR8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018514 True 5602 mRNA 0.44 2 13187923 13196197

Neighbor

gene id symbol gene type direction distance location
AMCG00018509 NA coding upstream 21778 13162657 ~ 13166145 (+)
AMCG00018510 llgl1,LOC107674688,LOC107592402 coding upstream 64537 13100603 ~ 13123386 (+)
AMCG00018511 NA coding upstream 99197 13087461 ~ 13088726 (+)
AMCG00018506 NA coding upstream 144237 13033006 ~ 13043686 (+)
AMCG00018508 NA coding upstream 156135 12958712 ~ 13031788 (+)
AMCG00018516 bud31,LOC106595689 coding downstream 39004 13235201 ~ 13237686 (+)
AMCG00018515 cpsf4,LOC107578701,LOC107720053 coding downstream 50337 13246534 ~ 13252245 (+)
AMCG00018523 tnrc18,LOC107742388 coding downstream 272696 13468893 ~ 13534827 (+)
AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding downstream 443526 13639723 ~ 13649092 (+)
AMCG00018527 NA coding downstream 586517 13782714 ~ 13785549 (+)
G116775 NA non-coding upstream 139829 13047117 ~ 13048094 (+)
G116765 NA non-coding upstream 229371 12905100 ~ 12958552 (+)
G116769 NA non-coding upstream 253359 12932940 ~ 12934564 (+)
G116728 NA non-coding upstream 304009 12879586 ~ 12883914 (+)
G116725 NA non-coding upstream 487158 12700501 ~ 12700765 (+)
G116882 NA non-coding downstream 170443 13366640 ~ 13367028 (+)
G116941 NA non-coding downstream 469826 13666023 ~ 13691367 (+)
G116975 NA non-coding downstream 643519 13839716 ~ 13839971 (+)
G116976 NA non-coding downstream 650693 13846890 ~ 13847092 (+)
G117130 NA non-coding downstream 1046667 14242864 ~ 14244203 (+)
AMCG00018498 NA other upstream 576044 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 667592 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 687869 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 1217145 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1931758 11252359 ~ 11256165 (+)
G116832 NA other downstream 57146 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 111701 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 801712 13997909 ~ 14022806 (+)
G117033 NA other downstream 850062 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 945180 14141377 ~ 14145995 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025613 smcr8a coding NC_007114.7 CM002887.2 40255408 ~ 40258950 (+)