AMCG00018515 (cpsf4,LOC107578701,LOC107720053)


Basic Information

Item Value
gene id AMCG00018515
gene name cpsf4,LOC107578701,LOC107720053
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13246534 ~ 13252245 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018515
ATCGATTAGTTCTGCCTGGCGGGTCATAGTTCAGAGTTCAGCTCTGGAGTGTTTCTGCGAGAGCGAGGATCGTATTGGGAAAAGAGggagaatctttttttttgaaGCTgtattagtgtttgtttgtgtaaacgTTTAAGTTtatagttattgttttatttgattatcgTTGCAACCGAGTAGTGAGTCCCTTATATTACAGCAAACATGCAGGAGTTGATCGCCACCGTGGATCACATTAAATTTGATCTGGAGATTGCTGTGGAGCAGCAGTTGGGGGCTCAGCCCCTGCCATTCCCGGGCATGGACAAGTCGGGGGCCGCCGTGTGCGAGTTCTTCTTGAAGGCTGCGTGTTTGAAAGGAGGCATGTGTCCCTTCCGTCACATCAGCGGAGAGAAGACTGTGGTCTGTAAACACTGGCTGCGAGGGCTGTGCAAGAAGGGGGACCAGTGTGAGTTCCTGCACGAGTACGACATGACCAAGATGCCCGAGTGCTACTTCTACTCCAAATTTGGGGAGTGCAGTAATAAGGAATGCCCGTTCTTGCACATTGATCCGGAATCCAAGATTAAGGACTGTCCCTGGTACGACCGAGGATTCTGTAAACATGggCCGCTGTGCAGACACCGGCACACACGCAGGGTCATCTGCGTCAActacttggttggtttctgtcCAGAGGGCCCCAGCTGTAAATTCATGCATCCTCGTTTCGAGTTGCCAATGGGAACAACAGAGCAACCTCCATTACCCCAGCAACCACAGACACAGCAAAAGCAAAACATTCAGCCCATGAATCAGCGGTCTTCGTCGCTGATCCAGTTAACCAACGCCAGTTCCAACTCCAACCACCAGAGAACGCCGCAGGTCATCGGGGTGATGCAGTCGCACAGCACCCCCACTGGGAACAGGGGCCCCCGGCCTCTGGACCAGGTCACCTGTTACAAGTGTGGCGAGAAGGGGCACTATGCTAACAGGTGTACAAAGGGTCACCTAGCATTTCTGAGTGGACAGTAATTTCCTGGACTACGCTCAGATGGAGGAGTCGCAGAAAGGAACGACGctgcaatgtctttttttttttttacccaaacCGACTTAGTCCAATTGACAGTGGATTAGCAACACTCGGCTCTTCACTTATGTGCAAAATCTAACTTGGAGAACGTCTCGTATTATACTTGTATCTCTTTAGAGGGGTATGACAGCCAGTTATACTGGAGGTATCTGGTGTATAGCCTAGAGCTACAGCTGATCAGAAACagttatatacatacacatccCCCACACCATGTGGAATGAGAACCAGTTGTTATGTGGAGTTCATTGCATCTTATCCCTCGACTGGCTTAAAGCTTAGAGCAAAGGAAATTTAATATGCTTATCTCTCTCCACAAGGCAGAAAAAACCTGCAATATACCAGGATAATCAATGTCTTCAagtgattttaaacaaaattaaaatcccaACTTTGAACAAGCTGATCAAAATGGGTTGAGAAGCAATAGTtacttaaatgttaaaattgaatTCTTAGGGTTTTGCTGAAGTTCACGTCCCTGCTTTACACAACATACTTGACTGACATGTAGAAGATGCTGTTGAGAAAGTGTTACAAAAATAGCctttagattgtttttctttttcacttggCTTTAACTTGCCATtgctttttaagtttgttttaaacccTGACCACCATTTGGAATGAATTCTGAGGCACTGGTGGcctcattgtttttttccccctcttctttttaatgttttaatttgacataCATTGACACCAGGTTTGTAACTGGAAAGCTGATCATTTTGAGTGAAAGTAAGGTATGTTCTTCTGGTGTCTTCTGGTGTCATAACTGCTGAAGATGAAGACTAGGAGAGGTGTCTTCCCAGATCATGGTTAGGTGACTAGGTATTTTTATCAGCTTTCAAAATTGTCCTTCAAGAACAGAAATAGTTCAATTAATTTAGAATAGAAACCTGCAATGAGATTTTGCTATATAATGTAGTATGCAAACGTTTGGGTGATGTTTTCTCTGCGTGAGGTCATTTAGAGTATTGCTTTCCTGCAAAAACATCAGACCTAAGCATCCTCTGAGGCTGTCTTGTTTAACATTCATTGAATTGACTTTTCCTTTTCACAGCTTTTCCTGTGAAGTTCATTTTCCTGTCAGTCAGTTCAGGGCTCCGGTGGTTGTGAGGTGAGGTCTGTAGGCCAATCAATTTAAATTGCAGCAATGTAAAATGGGAGAATGCACTGAGCCTGATGTCTTGCCAGTTTTCTCAATTATTGTAATGATCCAAATTAATTCTATGTATATATGAACTGTGTAATGATTGGATGGAAAGTTCAATGTGGTGCAGAATGGTACAGGCTGAGGTGAAAAGTGCCTGCAAAgcgagattttttttttatgtacagtgTCAGCAGCAGGTTAAGGGGTGGGCCAAAACAGCTTGTTGTTTcaactttttaataaaacaacattgtgaaatgattctgtatttcttttgatAAAGctgtttaatgtatgttttgtatcataaccatgagaaataaaaatcacttATTTTGCACATGG

Function

symbol description
cpsf4 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Acts upstream of or within eye photoreceptor cell development. Predicted to be located in nucleus. Is expressed in unfertilized egg. Orthologous to human CPSF4 (cleavage and polyadenylation specific factor 4).

NR:

description
cleavage and polyadenylation specificity factor subunit 4

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14404 CPSF4, YTH1; cleavage and polyadenylation specificity factor subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018515 True 2588 mRNA 0.43 8 13246534 13252245

Neighbor

gene id symbol gene type direction distance location
AMCG00018516 bud31,LOC106595689 coding upstream 8848 13235201 ~ 13237686 (+)
AMCG00018514 NA coding upstream 50337 13187923 ~ 13196197 (+)
AMCG00018509 NA coding upstream 80389 13162657 ~ 13166145 (+)
AMCG00018510 llgl1,LOC107674688,LOC107592402 coding upstream 123148 13100603 ~ 13123386 (+)
AMCG00018511 NA coding upstream 157808 13087461 ~ 13088726 (+)
AMCG00018523 tnrc18,LOC107742388 coding downstream 216648 13468893 ~ 13534827 (+)
AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding downstream 387478 13639723 ~ 13649092 (+)
AMCG00018527 NA coding downstream 530469 13782714 ~ 13785549 (+)
AMCG00018530 LOC108430595 coding downstream 607650 13859895 ~ 13878065 (+)
AMCG00018534 arpc1a,LOC107720063,LOC107674705,LOC107591778 coding downstream 633535 13885780 ~ 13902661 (+)
G116790 NA non-coding upstream 31182 13129738 ~ 13215352 (+)
G116775 NA non-coding upstream 198440 13047117 ~ 13048094 (+)
G116765 NA non-coding upstream 287982 12905100 ~ 12958552 (+)
G116769 NA non-coding upstream 311970 12932940 ~ 12934564 (+)
G116728 NA non-coding upstream 362620 12879586 ~ 12883914 (+)
G116882 NA non-coding downstream 114395 13366640 ~ 13367028 (+)
G116941 NA non-coding downstream 413778 13666023 ~ 13691367 (+)
G116975 NA non-coding downstream 587471 13839716 ~ 13839971 (+)
G116976 NA non-coding downstream 594645 13846890 ~ 13847092 (+)
G117130 NA non-coding downstream 990619 14242864 ~ 14244203 (+)
AMCG00018498 NA other upstream 634655 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 726203 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 746480 12489467 ~ 12500054 (+)
G116585 rbbp6,LOC107689611 other upstream 1275756 11966247 ~ 11970778 (+)
AMCG00018449 msrb1,LOC107376545,LOC105933050 other upstream 1990369 11252359 ~ 11256165 (+)
G116832 NA other downstream 1098 13253343 ~ 13255794 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other downstream 55653 13307898 ~ 13346877 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 745664 13997909 ~ 14022806 (+)
G117033 NA other downstream 794014 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 889132 14141377 ~ 14145995 (+)

Expression


Co-expression Network