AMCG00018518


Basic Information

Item Value
gene id AMCG00018518
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13227151 ~ 13234684 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018518
GCTAAATTAAGTGGTTTCTGAGTTTCTTAGACTGGCACCGGCAGCATTTTCGGTTTGAAGGCTTGTGTTctcccttcatttattttatttacagtttagtTTGTATCAGAAGCGAATCAAAATGCCCAAAGGAGGGAAAAAAAGCGGTCACAAAGGCCGCATGCGCACCTACACCAGCCCTGAAGAGATAGATGCACAAATGAAAGCTGAGAAAGAACGTAAGAAGGATGAAGAGGAGGGGGCAGCAGTAAGTGACAACCATAAGAGAAGAGGGCTGGAGGGCTTGATAGATATAGAGAACCCCAATCGagtaacacagaaaacaaagaaagtgaCCCAGCTAGAGCTGGAGGGGCCCCGGCAGCTCTCGAGGAAAGAAAGggAAGAGATAGAGAAGCAGAAAGCTAAGGAGAGATACATGAAGATGCACTTAGCTGGTAAAACAGAACAAGCAAAGGCAGACTTGGCCCGACTGGCAATCATCCGCAAACAGAGGGAAGATGCAGCTaggaagaaagaggaggagaggaaagTGGCGGAAACAGCTACCAAAGAACATCAGGACTGCACCATCTCTGGCCGTCTCCCTGCACCTCCTGAAAAATTCCCCTTTCCAGACTGCTCTTATAGACCCTGCGCTCCATCTCTCTGCTTAACAACCTTTAAACTGATATCAGCAGTACAGCAATTCTTTACACTGCCCACTacaaaagcagttttgtttcctgtttagTTCTGTCTGcttcatattcaaatgcattgcattcTTCTATCAGAAGACTGAATTTGGACAGTGTTTTGTTCTACTGTAGAAATTAATTATGTTGTGTTGCATACCATATTTTTGGATAAGCCACTCCACTCTATGCAGCTTTTACACTATATACCTTTGCTGTATCCGTATTGGGAAAATGGttagcaaaatatataataataatataaacacttATCTTATTAAACGATTTAAttaggtttgtttatttcatatataaatacttatCTATAAGGCTCAAAAACAGCTTTAAATCTTACAAAAGGCCCTTGAGCTTACCccaattataaaattatttttaaaaattgtccTATGTTGTGTGTTGCAACCTTTCGTGGATAAGTAAAAACTAGGATTTTGGCTTCCATACAAAATCACAggttattatgattgttatcaCATTAGTAGGGCAATAATCTTCAAAGCCAAATGTTATAatgattattgtaataaaaattTATGAAGTCATAGCAATAACATCTTTGTTTACAATGCAATCAGCCAGTGGCGttggcaaaataaaacataacacgTATGGAGGTGGAACTGGATGCATTAATATATATCATACCAAacttctaaaatacaaataatttatgtAACCCATTTAGTGTGTTAACTCTGTACCTTTCAAACTCTGTGGAATATACAGTTTCAAAGTTTTCAAAGTTTGTTGTTACAAGTAAGTAAGAACCTCAGAAGAATCTAACTTGGTAATTGAACAAGATCCATGAGTGTCCTGTCTGAGaggtaaaatggtaaaaatcAGAGAAGTATATTTTTGTACAGTATTTGCTTGTATCAAGTAAGCAACAattgcatattaaattaataattgtatgatgcgtttttttacttttgtgatattaaaaatcattttcattACTAACTCCTTGATCCCACTGAAATGGTTTGTGCTCACTTACTGCAGTCTCTCCAAGGAAAAGCAAATTGCATCATCAAGAATGAAATATGTGAAAGGTTTTGGATTACAGgaacagaatattaaaataatgtattttcatttgagCCAACAATTGCTTAACTGTCATTGTTTGTAAGACCTTAGATATAACTTGACAAAGATTGCCCTTTTATGACAGTGGTTTCCCCAACAGcatttttattacaatgttaCACAGCCA

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018518 True 1917 mRNA 0.37 6 13227151 13234684

Neighbor

gene id symbol gene type direction distance location
AMCG00018517 shmt1,LOC107674655,LOC107581728,LOC107737723,LOC107720052,LOC108257064 coding downstream 3441 13214592 ~ 13223710 (-)
AMCG00018519 NA coding downstream 14556 13203693 ~ 13212595 (-)
AMCG00018512 LOC107674657,LOC107592418,LOC107737959 coding downstream 39402 13160357 ~ 13187749 (-)
AMCG00018513 flii,LOC107703428,LOC107674686 coding downstream 67306 13138873 ~ 13159845 (-)
AMCG00018504 LOC107592748 coding downstream 292713 12929748 ~ 12934438 (-)
AMCG00018521 NA coding upstream 4126 13238810 ~ 13245731 (-)
AMCG00018524 NA coding upstream 337682 13572366 ~ 13578310 (-)
AMCG00018525 actb,LOC102799139,LOC103365100,LOC102299797 coding upstream 348420 13583104 ~ 13587070 (-)
AMCG00018529 NA coding upstream 509305 13743989 ~ 13745104 (-)
AMCG00018531 smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717 coding upstream 549169 13783853 ~ 13832385 (-)
G116784 NA non-coding downstream 180558 12989436 ~ 13046593 (-)
G116750 NA non-coding downstream 342729 12879665 ~ 12884422 (-)
G116749 NA non-coding downstream 350388 12874915 ~ 12876763 (-)
G116672 NA non-coding downstream 928440 12295461 ~ 12298711 (-)
G116619 NA non-coding downstream 1106544 12119808 ~ 12120607 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding upstream 96207 13330891 ~ 13342748 (-)
G116883 NA non-coding upstream 131890 13366574 ~ 13367055 (-)
G116918 NA non-coding upstream 266034 13500718 ~ 13502497 (-)
G116931 NA non-coding upstream 294012 13528696 ~ 13534836 (-)
G116949 NA non-coding upstream 385539 13620223 ~ 13620432 (-)
AMCG00018490 NA other downstream 936607 12287568 ~ 12290544 (-)
G116577 NA other downstream 1315815 11911014 ~ 11911336 (-)
G116428 NA other downstream 2024263 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 2080211 11088174 ~ 11146940 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 2143371 11061628 ~ 11083780 (-)
AMCG00018522 NA other upstream 18401 13253085 ~ 13257250 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 410684 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 1007861 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 1268719 14503403 ~ 14520875 (-)
G117377 NA other upstream 1501454 14736138 ~ 14738312 (-)

Expression


Co-expression Network