AMCG00018521


Basic Information

Item Value
gene id AMCG00018521
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13238810 ~ 13245731 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018521
ATGTCCAAGCTTCTGTCTTTCAGAGGTTTCAGGAATCATTTTAATGTGGGACTTGAGTATTGCTCTAACTACTTAAGTGCCCCCTATCCCTGGCAGAGATCTGCTAGTAGGGATGCTGGGAGACTTGCTCCGTGTTTCAGTACATTACTTCTAGGAACAGTCAGAGCTACTCAGCTGGGAAGACTCAGGGTGTCAGCGTGCCTGAAGGGCCCACACAACACTAAGGTGACGCAGGCCAGGGGATCAGACACAGGAGACGCTAAAGACCCCACGACTAGTGAGGCTGTGCCAGAGGGAGATGCCCCAGCCGTGGAAGATTTCGGATCTTACGCCAAATCATTTTCGTCCAGAAAGGCTTTCCGTAAAACATCTCCAGAGCTGCAGGACCTCCAGTACAGAGAGGCCGGGCTTGCTGATGAGGAGGAGGTGAAGAGGAGGCCTAGGCCAGCTCAGAGGAATACTACTTACTGGTATTTCCTACAATGCAAGAAACTGATAAAGCAGGACAAGCTGGCTGAAGCGCTGGACATGTTTGAGACCCAGATGCTGAAGGTTGAACGCCTGCCGCCTGAGGAGTACAACTACACTGTGCTCATTGGAGGCTGTGGCCGGGTCGGCTACCTCAAGAAGGCTTTTAAACTCTACAATGATATGAAGAAGCGAGGTCTGGAGCCCACAGACGCCACCTACACAGCCCTGTTCAACGCCTGTGCCGAGTCGCCCTGGAAGGACTCCGGGCTGCAGCAGGCCCTCGCCCTCCAGCAAGAACTAAGGAGGAATAACACACAGCTCAACCTGGTCACCTACCACGCGCTGCTCAAGACCCATGCCCTCTGCTCGGACCTCAGAGCCTGCTTTCACCTGCTCAGGGAAATTTTGCAAAAAGGTCATGCGATCAATCAGGAAACCTTCAACTTCCTCTTGATGGGCTGCATTCAAGATAAAGAGCACGGATTCAGGTATTCACTGCAGGTTTGGCGTCAGATGCTAAGGCTGGGAATAAAGCCAGACTCCCACAGCTATAACCTGCTGCTACGTGCTGCTCGGGATTGTGGGATAGGGGACCCCGCTGTGGCCTCTCGATTGCTGCTGAGAGACCAAGAGGAGATCAGCCCAACAAAGGTCAGGAGAGGAAGGAAGAGTCAGAAGGTGGAGGCTGAGAAGGCGGGGGCCTACAGAGACATCGAGGCCTTAGAAAGACAGCTCTTTCTGGACGTGGAATCTGAGAAGGGCTGTGAATTGCCACAGAAAGGGAATGCGGTAACTGAGATGGAAACGGAAAGACTTGCTGACCCAACAAAAGAAATATCAGCCAGTAACCTGAACCAGAATGACGAGAACTTGAACACACAAGTGTTTTCAGACTTGGTGCCCTTTAACAGAACACACCTCGCTGAAACTGAATTTACGTCCCCCAAGACCTCAGTGGCCAATAGTAGAACCAGTCTCCCCAACCTTCTTGATCTGAGATTGTCCGGCACCGATGTAGTGTCCCTGGGCTGTGTGGATCGAACCTCTGACCGGCTGGCCTTGATCGGAGACATGGAGGGATTCCTGAGCAGGATGGACACCCACGGCCTCAAACCTGACATCAAGACTGTCAGCCTGTTGGCGGACATCGTGGAGCCTGGAAGCCCCACAGAATCTGGCCTGCTCTCTGTGCTCAGTGAACACAAGATCAAACCAGACATTAAGTTCTTCAACACCCTGATTCGGAAGAAGGCGAAAGCCAAAGATTTAGAAGGAGCCAAGGCTCTGTTGCCGGTGCTGTCTGAGAGAGGATTGCAAGCAAATGTTCAGACGTTCTGTAACCTGGCTATTGCCTGCAGGAAACAGAAGGATGGTCTACAGCTACTGTCTGACATGAAGGAACGCAGTATCACTCCCAACGCTCATGTATACAGTTCCCTGATCAACTGTGCAGCCAAACAGTTGGACTACATGTATCTGAAAGAGCTACTCAGACATATGAAAGAGAACCAGGTTGCACCCAATGAAGTGATCATCAGGCAGCTGGAGTTTGCAGCTCAATACCCACCAAACTATGATAAGtataAGTCAAAAAACACATACCTGGAGAAGATTGATGGCTTCAGAGGTTACTACAATTACTGGCTCAAATCAATGCCCGGTCAGGAGACCCCACACCCCTGGGAGAAGTTTAAAACTCCACGGCAAACAGAAAAGCAGCAGGACAGCAGTGGAGAAAACCTTCAC

Function

GO: NA

KEGG:

id description
K17710 PTCD1; pentatricopeptide repeat domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018521 True 2217 mRNA 0.51 8 13238810 13245731

Neighbor

gene id symbol gene type direction distance location
AMCG00018518 NA coding downstream 4126 13227151 ~ 13234684 (-)
AMCG00018517 shmt1,LOC107674655,LOC107581728,LOC107737723,LOC107720052,LOC108257064 coding downstream 15100 13214592 ~ 13223710 (-)
AMCG00018519 NA coding downstream 26215 13203693 ~ 13212595 (-)
AMCG00018512 LOC107674657,LOC107592418,LOC107737959 coding downstream 51061 13160357 ~ 13187749 (-)
AMCG00018513 flii,LOC107703428,LOC107674686 coding downstream 78965 13138873 ~ 13159845 (-)
AMCG00018524 NA coding upstream 326635 13572366 ~ 13578310 (-)
AMCG00018525 actb,LOC102799139,LOC103365100,LOC102299797 coding upstream 337373 13583104 ~ 13587070 (-)
AMCG00018529 NA coding upstream 498258 13743989 ~ 13745104 (-)
AMCG00018531 smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717 coding upstream 538122 13783853 ~ 13832385 (-)
AMCG00018532 NA coding upstream 605680 13851411 ~ 13857590 (-)
G116784 NA non-coding downstream 192217 12989436 ~ 13046593 (-)
G116750 NA non-coding downstream 354388 12879665 ~ 12884422 (-)
G116749 NA non-coding downstream 362047 12874915 ~ 12876763 (-)
G116672 NA non-coding downstream 940099 12295461 ~ 12298711 (-)
G116619 NA non-coding downstream 1118203 12119808 ~ 12120607 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding upstream 85160 13330891 ~ 13342748 (-)
G116883 NA non-coding upstream 120843 13366574 ~ 13367055 (-)
G116918 NA non-coding upstream 254987 13500718 ~ 13502497 (-)
G116931 NA non-coding upstream 282965 13528696 ~ 13534836 (-)
G116949 NA non-coding upstream 374492 13620223 ~ 13620432 (-)
AMCG00018490 NA other downstream 948266 12287568 ~ 12290544 (-)
G116577 NA other downstream 1327474 11911014 ~ 11911336 (-)
G116428 NA other downstream 2035922 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 2091870 11088174 ~ 11146940 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 2155030 11061628 ~ 11083780 (-)
AMCG00018522 NA other upstream 7354 13253085 ~ 13257250 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 399637 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 996814 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 1257672 14503403 ~ 14520875 (-)
G117377 NA other upstream 1490407 14736138 ~ 14738312 (-)

Expression


Co-expression Network