AMCG00018522


Basic Information

Item Value
gene id AMCG00018522
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13253085 ~ 13257250 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018522
GTATCATCAGTTTGTATGTACATGCTAGGAACAGTGGTGCCAATAAAGGAAAGAGAATTTATTTAACACAGGCTACTGGAAAATAACAGCTTAGTGTTTCTGTTGGGGATGGCTGAGAATGGAAGCTGTTTCCCACAAGTCTTAGCGTCAAAGACACACTGTGTAGCAAGATGGCTGATAGACCGGTGCCCATCTCTGAGAGGAGGCTTCTGGAGGTGAAGCTGGGAGAGTTCCCAGCCTGGCTTGGCAGCCGGGACTTTTCTCCCAGTGGAGTCCTCTCTGCCCTTCGCAGAGGGCATGACAGATATTATAACAAGTACATCAATGTCAAGAAGGGTGGCATTGGTGGTATTGCTATGCTTCTGGCAGGCTATGTAGTTGTGAGCTACATCTGGGACAGGGAACATCTTAAGCACGACCGCTGGAGGAAGTACCACTAAGCTCGGGCCCAGGCCTTCTCATGCGGACTACAGTGGCAAGAACAGCATGcccttttttctgtattgtgtacAAAGTCAAGTTTGTgaccaagaaacaaaataaacctatAATGTGTTGTGTAAGATACTTGAGTAACTGGCTTTGAGTCTTTTTTCAGACTATACATATACTGTGTAGAGGTAGCCTTTGTTCCACAgttttcattgatttgttttcatggaTTTCTAAAGAATAGTTTACTAGGATTTATCCATCTCTAATCCTTACATTATAATACTATTGCAGAGTAATTCAGAAACCTGATCTTGAATGACGTATAAAAGTTGCTGTTCTTTGCAAAACGGAACACGA
>TU146385
CTCATTTCTGCTCGGCTACGTTTAGACCTCATTCCCATAATGCCTCTCCTCAGGAAGCTGTTTCCCACAAGTCTTAGCGTCAAAGACACACTGTGTAGCAAGATGGCTGATAGACCGGTGCCCATCTCTGAGAGGAGGCTTCTGGAGGTGAAGCTGGGAGAGTTCCCAGCCTGGCTTGGCAGCCGGGACTTTTCTCCCAGTGGAGTCCTCTCTGCCCTTCGCAGAGGGCATGACAGATATTATAACAAGTACATCAATGTCAAGAAGGGTGGCATTGGTGGTATTGCTATGCTTCTGGCAGGCTATGTAGTTGTGAGCTACATCTGGGACAGGGAACATCTTAAGCACGACCGCTGGAGGAAGTACCACTAAGCTCGGGCCCAGGCCTTCTCATGCGGACTACAGTGGCAAGAACAGCATGcccttttttctgtattgtgtacAAAGTCAAGTTTGTgaccaagaaacaaaataaacctatAATGTGTTGTGTAAGATACTTGAGTAACTGGCTTTGAGTCTTTTTTCAGACTATACATATACTGTGTAGAGGTAGCCTTTGTTCCACAgttttcattgatttgttttcatggaTTTCTAAAGAATAGTTTACTAGGATTTATCCATCTCTAATCCTTACATTATAATACTATTGCAGAGTAATTCAGAAACCTGATCTTGAATGACGTATAAAAGTTGCTGTTCTTTGCAAAACGGAACACGATCACtcaaattattacttcataGAAATGCATGAATAAGA

Function

GO: NA

KEGG:

id description
K02130 ATPeF0F, ATP5J2; F-type H+-transporting ATPase subunit f

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018522 True 792 mRNA 0.43 5 13253124 13257250
TU146385 False 763 TUCP 0.43 4 13253085 13255769

Neighbor

gene id symbol gene type direction distance location
AMCG00018521 NA coding downstream 7354 13238810 ~ 13245731 (-)
AMCG00018518 NA coding downstream 18401 13227151 ~ 13234684 (-)
AMCG00018517 shmt1,LOC107674655,LOC107581728,LOC107737723,LOC107720052,LOC108257064 coding downstream 29375 13214592 ~ 13223710 (-)
AMCG00018519 NA coding downstream 40490 13203693 ~ 13212595 (-)
AMCG00018512 LOC107674657,LOC107592418,LOC107737959 coding downstream 65336 13160357 ~ 13187749 (-)
AMCG00018524 NA coding upstream 315116 13572366 ~ 13578310 (-)
AMCG00018525 actb,LOC102799139,LOC103365100,LOC102299797 coding upstream 325854 13583104 ~ 13587070 (-)
AMCG00018529 NA coding upstream 486739 13743989 ~ 13745104 (-)
AMCG00018531 smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717 coding upstream 526603 13783853 ~ 13832385 (-)
AMCG00018532 NA coding upstream 594161 13851411 ~ 13857590 (-)
G116784 NA non-coding downstream 206492 12989436 ~ 13046593 (-)
G116750 NA non-coding downstream 368663 12879665 ~ 12884422 (-)
G116749 NA non-coding downstream 376322 12874915 ~ 12876763 (-)
G116672 NA non-coding downstream 954374 12295461 ~ 12298711 (-)
G116619 NA non-coding downstream 1132478 12119808 ~ 12120607 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding upstream 73641 13330891 ~ 13342748 (-)
G116883 NA non-coding upstream 109324 13366574 ~ 13367055 (-)
G116918 NA non-coding upstream 243468 13500718 ~ 13502497 (-)
G116931 NA non-coding upstream 271446 13528696 ~ 13534836 (-)
G116949 NA non-coding upstream 362973 13620223 ~ 13620432 (-)
AMCG00018490 NA other downstream 962541 12287568 ~ 12290544 (-)
G116577 NA other downstream 1341749 11911014 ~ 11911336 (-)
G116428 NA other downstream 2050197 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 2106145 11088174 ~ 11146940 (-)
AMCG00018437 srebf1,LOC107713935 other downstream 2169305 11061628 ~ 11083780 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 388118 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 985295 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 1246153 14503403 ~ 14520875 (-)
G117377 NA other upstream 1478888 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 2241412 15498662 ~ 15518315 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2339050 atp5j2 non-coding NW_023493664.1 JAAXML020000507.1 1021952 ~ 1024681 (-)