AMCG00018524


Basic Information

Item Value
gene id AMCG00018524
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13572366 ~ 13578310 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018524
ATGTACAGATTCAGACACAGTGGTGAGAAGAGGTCATTAGGTCATGTGGATTTATTTCCTTCATTGCAGGGTATGTGCAGTGATGACTCTTTAGAAATTAATGGCATCAACATCGCAGAGTTTTCTGATGAGATTTTGCTGAACATCTTGAAGTACGTGCCTGGTCACGACCTGGTGCACTGTGTTAGGAGAGTGTGTAAGAAGTTTGACAGTTTGTGTCTGGATAAGAGCCTCACCAGCAATGTGCAACTTTCCAGAGAATATCAGgTAAGTGACAACAAAGTAAAGGAAATGATAAAAGAATTAGCTGGTGAAATCCAAACCCTTAGCCTGAGTGGCTGCTACTGGCTTTCTGGGTCAACCATTGACCAGCTGTCCAAATGCAAGTGCCTGGTGAAGCTGGACCTTTCAGGCTGCCGTCTGACCTCCTTGCGCCTCTCCAAGATCCTCTCCTCTTTACCGAGCCTGCGCTCCCTAGCCATCGATATCAATCACGGCTTTGACTCTAATCAGCTGAGCAGTGAGAGCAAGGCCACCCTGAGCCAAGTCAAGGAGCTCAAGCAGACTCTCTACACGCCCTCCTATGGGGTGGTGCCCTGCTGTACCAATCTGGAAAGGCTGCTGCTGTACTTTGAAATTCACGACTTCACCAGGGAAGGGACCACAGTTTCCTGCCAGCTGATGGTGGGGCAGAGCAGTGTCCCCCATTACCAGAACCTCCATGTCTTTTATGCCAGGCACGCACCTGGGTATGTCAATCAAACAGTCATGAGCCTGTATCTGGCTGTGTTTAGTGTGCGTGTCCCAGAGCACCTCAGGGCCTTTGTCATTTCAATCCCCGGAAACTTTCCAGAGAGTGGGCCGGCAGCTAAGAACCTCCTGGAAGGCATGGCAAAGAACGGGGCACTGGAGGCATTGCAGCTTCCTAAGACTTGGGTGGACAGCTCTTCCCTGATGCACATTCTGAAACTCAGCACGCCTTCCTACTTGAATTTCAGTCGCTGTACTGTTTCCGGAAGCCACCTGATCCACAGGGTGCTGAACGAGGGCAAGTACCTCAAATGTTTGATAAGCCTGAATCTCAGTGGTTGCGTGCACAGCCTTTCCACAGAAAGCTCCAGGAAGGCAGAAGACGATATAGACTGCCAGGTTCTGGAGACTTTAGCAAGAGCTTGCCCCAATGTTAAACACCTCAACCTGTCTGCAGCACACCACCACAGCCCAGCAGCCTCGGAGAAGCACCTGTGCACAGTATTGGCCAAGCTCAAAAGCCTGCGTTCTTTGTCGCTGCCTGTGTGCGCTGCGTCTAATGGTGTGAAAAGTTCAGAGCAGTCACCCAGCAATCATGCTCTCCCTGTGCCTAACTCCTTCACCCTGGGGTTAAAAAAGAGCGTCCGTGTCGGTATCCAAACCTACAATCCCAAAACCAGCTCTGAGCAGCGGGACAGTGATCACTCCAGCTTTCAGGCACTTGTTGAGGGCAACCCTTTCCTGGAAGAGCTGGAACTTATTGGGTCAAACTTCTCGTCGGCTATGCCCCGTAACGAACCTGCCATCCGCAAAGAGCTAACACCCTGTGCACGGGCGCGGAGCATTGGGGATGAGGAGGTGGCCCGCATAGGAAGACTCAGGTTCTTGAAAAGCTTGACTTTGGCACAGCTGCCAGGGATTCTCAATGGGGCTGGACTGGTGCAAGTGGCCACGAGGTGCCAAGACATCCAAGTGCTATCTCTGGCTAACCTGGGCATGCTCCAAAAAGTCACCTACATGCCAGCTCTCATTGAAACACTCACGCACTGTAAACAGCTGAAAGACCTGAGACTAGAGCAGCCCTACATCAGTGCCAACATGCAGTTTTTCCAGGCACTGAGTCAGTGCCGCTCCCTGCGCCGTCTCTGCATTATCTCTCGCAATGGGACGTTCCAGCCAGACGCGGTGATGTCATTCATGGGCACTTGCTGTGATGTCATCATGTGCCACATGTTTATGGGAGAGACCCTGGTGGCCTGCAAGAACTTACAGCAAGCTCTTCTCCAG

Function

GO: NA

KEGG:

id description
K10284 FBXL18; F-box and leucine-rich repeat protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018524 True 2037 mRNA 0.52 3 13572366 13578310

Neighbor

gene id symbol gene type direction distance location
AMCG00018521 NA coding downstream 326635 13238810 ~ 13245731 (-)
AMCG00018518 NA coding downstream 337682 13227151 ~ 13234684 (-)
AMCG00018517 shmt1,LOC107674655,LOC107581728,LOC107737723,LOC107720052,LOC108257064 coding downstream 348656 13214592 ~ 13223710 (-)
AMCG00018519 NA coding downstream 359771 13203693 ~ 13212595 (-)
AMCG00018512 LOC107674657,LOC107592418,LOC107737959 coding downstream 384617 13160357 ~ 13187749 (-)
AMCG00018525 actb,LOC102799139,LOC103365100,LOC102299797 coding upstream 4794 13583104 ~ 13587070 (-)
AMCG00018529 NA coding upstream 165679 13743989 ~ 13745104 (-)
AMCG00018531 smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717 coding upstream 205543 13783853 ~ 13832385 (-)
AMCG00018532 NA coding upstream 273101 13851411 ~ 13857590 (-)
AMCG00018535 wipi2,LOC107720064 coding upstream 325309 13903619 ~ 13915955 (-)
G116931 NA non-coding downstream 37530 13528696 ~ 13534836 (-)
G116918 NA non-coding downstream 69869 13500718 ~ 13502497 (-)
G116883 NA non-coding downstream 205311 13366574 ~ 13367055 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding downstream 229618 13330891 ~ 13342748 (-)
G116784 NA non-coding downstream 525773 12989436 ~ 13046593 (-)
G116949 NA non-coding upstream 41913 13620223 ~ 13620432 (-)
G117011 arpc1a,LOC107388895,LOC107674705,LOC107703414 non-coding upstream 307999 13886309 ~ 13887367 (-)
G117012 arpc1a,LOC102781765 non-coding upstream 309111 13887421 ~ 13890103 (-)
G117015 arpc1b non-coding upstream 319190 13897500 ~ 13966269 (-)
G117066 NA non-coding upstream 516981 14095291 ~ 14100107 (-)
AMCG00018522 NA other downstream 315116 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 1281822 12287568 ~ 12290544 (-)
G116577 NA other downstream 1661030 11911014 ~ 11911336 (-)
G116428 NA other downstream 2369478 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 2425426 11088174 ~ 11146940 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other upstream 67058 13645368 ~ 13727870 (-)
AMCG00018555 LOC107689851 other upstream 664235 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 925093 14503403 ~ 14520875 (-)
G117377 NA other upstream 1157828 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1920352 15498662 ~ 15518315 (-)

Expression


Co-expression Network