AMCG00018527


Basic Information

Item Value
gene id AMCG00018527
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13782714 ~ 13785549 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018527
GTCACCGGGGCATTTCGATATAgttgagtaaataaataatacttaaatacaaattaaattgagcCATTGAGTGTTCCTTCTCCGCTTACATATTGAGGGAGTACATTTCTGTGTGAGAACCTCTCTGTTGTAAACTTCTGAGAATACTTCCCCGACCTCAATGACATTTAGTGAAATGGGGAAGTTGGTATTGCAACATGCAAGAAAGACGCAACGAGTTGTTCTGCATAATGGACTTGTGAATGCAGGAAAAGTACTGGTAGTACCTGTGGACGGGAGTCACTGGAATACCATCAAAATACTGATACTAGAGCTTGTGGGGAGAAGCCACGAAGTGACAGTGCTGAGGTTATCCAATTCTATTAACATAGAGGAGGACTCCACCGACTTTAAAGTAGTTACAATCGAACTTCCTGGGGAGCAAGTCAGAACcaaggaagaaaaggaaaaaagtgctGCCTCCTGGATATTACACACTGCCTTCAACATGGAGAGCCAGTCCATATCTGCGTTTTGGtacttttttaaaatgatgaagaCAGTAAGTCAGGATTATGAGATCGCCATAGAGACAACATTTGAGAACCTCCAACTTCTGAAGCAATTACAAGCCTCTGCATTTGACCTCGTGCTGGCAGACTCTTTCTATCCAGGGGGCCTGATGTTGGCGCGATATTTAAACCTACCTGTGATTCTGTTTGGCAGATGGATGCCCACTGAAGATATACACTTTGCGATCGCCCCCTCACCCCTCTCCTACGTTCCGGTGTTAAATTCAAGATTAACCGACAGAATGGCATTTTCTGAGAGACTTAAAAACGTCCTTTTGTACATGTTCGGAAAAAAAGTTGTGTGGCGCTACAGTGGACCACCGATTTCAACTTTGGGAAACAACACCAAGGTACTTAGTTGGCTGCCTCAAAATGACCTCTTAAGCCATCCCAACACCAGGGTTTTCATAGCACATGGTGGTGAAAATGGGATTTACGAGGCAATCTATCACGGAGTTCCAGTAGTTGGCTTTCCACTTTATGCTGATAACTATGAAAATCTTCTGCGGCTTAAAGTCAAAGGGGCAGCAGttctaattgaaaatgtaaaccaaCTGACAAGACATGACATTTTCAATGCCATTCGGATCATTACAGAAGATCCTTCTTACAAATCGAATATGAGAAAGTTGTCTCAGGTGCACAGAGACGTACCCGTTCCCCCTAAAGCACTGGCTGTTTTCTGGGTTGAATATGTCATGAGGCACAAAGGCGCCGTCCACCTCAGAGCAGCTGGTAATGACCTGCCTTTCTACCAGTATTATATGCTGGATGTTGTGGCATTCCTTCTAACTTTGTTggtattattttcattagtacTTTGGACTTTATTTAAAGGTCTTcgcattaaactgttttacagtataaagaagaagaatgatTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018527 True 1435 mRNA 0.42 3 13782714 13785549

Neighbor

gene id symbol gene type direction distance location
AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding upstream 133622 13639723 ~ 13649092 (+)
AMCG00018523 tnrc18,LOC107742388 coding upstream 247887 13468893 ~ 13534827 (+)
AMCG00018515 cpsf4,LOC107578701,LOC107720053 coding upstream 530469 13246534 ~ 13252245 (+)
AMCG00018516 bud31,LOC106595689 coding upstream 545028 13235201 ~ 13237686 (+)
AMCG00018514 NA coding upstream 586517 13187923 ~ 13196197 (+)
AMCG00018530 LOC108430595 coding downstream 74346 13859895 ~ 13878065 (+)
AMCG00018534 arpc1a,LOC107720063,LOC107674705,LOC107591778 coding downstream 100231 13885780 ~ 13902661 (+)
AMCG00018533 mmd2,LOC107725363,LOC103909971 coding downstream 156079 13941628 ~ 13960988 (+)
AMCG00018536 NA coding downstream 187001 13972550 ~ 13985601 (+)
AMCG00018547 NA coding downstream 326155 14111704 ~ 14111910 (+)
G116941 NA non-coding upstream 91347 13666023 ~ 13691367 (+)
G116882 NA non-coding upstream 415686 13366640 ~ 13367028 (+)
G116790 NA non-coding upstream 567362 13129738 ~ 13215352 (+)
G116775 NA non-coding upstream 734620 13047117 ~ 13048094 (+)
G116765 NA non-coding upstream 824162 12905100 ~ 12958552 (+)
G116975 NA non-coding downstream 54167 13839716 ~ 13839971 (+)
G116976 NA non-coding downstream 61341 13846890 ~ 13847092 (+)
G117130 NA non-coding downstream 457315 14242864 ~ 14244203 (+)
G117131 NA non-coding downstream 459159 14244708 ~ 14245318 (+)
G117197 NA non-coding downstream 652443 14437992 ~ 14439091 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other upstream 435837 13307898 ~ 13346877 (+)
G116832 NA other upstream 526920 13253343 ~ 13255794 (+)
AMCG00018498 NA other upstream 1170835 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 1262383 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 1282660 12489467 ~ 12500054 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 212360 13997909 ~ 14022806 (+)
G117033 NA other downstream 260710 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 355828 14141377 ~ 14145995 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other downstream 403454 14189003 ~ 14191077 (+)
AMCG00018551 NA other downstream 453693 14239242 ~ 14242717 (+)

Expression


Co-expression Network