AMCG00018528 (LOC104956910,LOC107742399,LOC107591749,LOC106595856)


Basic Information

Item Value
gene id AMCG00018528
gene name LOC104956910,LOC107742399,LOC107591749,LOC106595856
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13645368 ~ 13727870 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018528
TCCAGAGGGCATATTCTCCTGGTGGTGACAAGCTGTGGCGTGGACTCTGATGAACTTCactgtggaaagaaaatatatcatCTGGAGGCTGTGCTGCAGCCATGGATACGCGAAGAACCTGGTGGCGGCTCCATATCCCTGGGGCAGGTTGGGTGCAGATACCTTGGGGCAGAGAAGCATGGTGGAAAAGCCCGCAGCGATCTGCTCATTACCATATCGGATGACTCTGATGATGAGCCGCCTAACCTTATACCAAATAATCCAATCCAGATTAAATCGGAGTTGAACGACGAGGAAGACGAAGAGGATGTTGTGATTTTGGAGCCACAAAGATCCCAACAGCCTCTGCGTCCGAACGTTATACGCCCTGCTGCTCCATGGGGGGGGGTCCCCCTGCTCAGAACACTAGAGAGACAAGGGGAGGCTCCCAGAGAATCATCTCTGCACCCTGCGGAGCGGAGGATACTAATTGCACGTCGTCGATTCTCACATAACAACAATGTGGACTTAGTGTCAGGGAAAGAAGCCCTTAATGTCTTAAAAGAAAACCAGAATGCTGCACCTTCCACTTCTACTGCATATCCTGTGCCGAGACCTCAACTGTTGACAAGAAATGAACATGTAGTTGAGCAAGGACTTCCAGGACGTGCTGGGCCTGCTGCTGTTTATAAAGGGGAAGTTTTAATTGCCACAGCACCCGAGCCATTGGTTCCCCTTGAGGCCAGGCACGGGATTGTAGTGGGAACCAGTCCGAATGTGGATGGACTCTTAAATGCCCCAACAGCATCTTACCAGGAGCAGCGTCCTGAACGCGTTCAGATCCACATGGACCAAGTCAGGCAGGTTGGCATGGTTGCCCACACAACTGTGCCACCCCAAGCTCCCTTCCCAGCTCCACCtgaacagcaacagcaagaccTGCTCAAACTTGTTCCAGTTCAAGTTATTCCCAACCACAGGAACCAGGCCCCCCAAGCCCTACACGCCCCGCTAACCGTGATTAAAGATGAGCCACAAGCACAAGTTGATAATGAGAGACCTGGGCCATCTGTCCCAAATCGGGAATTGGGAGCTGTTGGGTTTAACAGAGATCTAATTAACTCATTGGTGCATGGAGTGGCAGAATTTTTTCCTGATGTAGAAGAGGAGTACATTGAAACAATAATTAAGAGGCACAATTTGCAAGACTTAAATTTGATTTGCAACTTTTTGTTAGAAAACCCTGAGTatccaaagaaagaaaggacTTCTGTTTTGAACCCATCGAGTATTCTCCTTGAAACTAGTGATACTGAAGCACAGaataaagaaaattattttgatttctccaAACTGGGACCTGTAGAGCAACGGACGACCATTCAAGCTGCAGATCTGCTCATGGccgattttaaaatgttaagcaGTATGGATATCAAATGGGCTCTGCATTCCCTTAAAGGACACTATGCAATCACACGCAAGGCCTTATCTGATGCCATTAAGAAATGGCGGGAACGATCATCTCCAGTGtctggaaagaagaaaaaacgaaAAGAAATGAACCAGTTTTCCTATATAGATTTCAAGTTTGAACATGGTTCTGCTAAATTTGAGCGGCGTATGTTCTTTCTGGAAAACAAGAGACGACACTGGAGGACATATGATAGAGATTCCCTTCATCCTTTGTTGCAGAATGAGATCAAGTTCTATGAACAGAAAGCTAAAGAAATGGCAGAGCATGAAGATTTCTTGTTAGCTCTACAAATGAACGAGGAGCAATATCAAAAGGATGGCCAGTTGATTGAATGCCGATGCTGCTATGGTGAGTTTGCATTTGAAGACCTGACTCAGTGTGCCGATGGACACCTATTTTGCAAGGAGTGCTTGGTGAAATACGCACAGGAGGCTGTATTTGGTTCAGGACGCTCAGAGCTGAGTTGCATGGATGGTACGTGTACATGTGCGTTCCCCACCAGTGAACTGGAGAAGGTGCTCCCGGAGAACATCCTGTGTAAATACTACGAACGCCAGGCTGAAGAGGCTGTAGCTGCTACCTGCGCCGACGAGCTCGTGAGGTGTCCCTTCTGTAATTTCCCAGCTCTGCTTGATAAAGAAGTCTCTCTATTCAGTTGTCCCAACCCACGCTGCAGAAAGGAAACCTGTCGGAAGTGCCAGGTACTGTGGAAGGATCATGCAGACATGTCGTGTGAGCAGGTGGTTGAGAGGGATGAGATTCGCCTCAGGGTGGCTTTTGAAGAGAAAATGACAGCGGCCCGTGTGAGGAAATGTCACAAGTGTGCGACTGGCTTGGTGAAGTCCGAAGGCTGTAATCGAATGTCCTGTCGCTGCGGCGCCTACATGTGCTACCTCTGCCGAGAGCCCATCAATGGCTACAACCACTTCTGCCAGCATGCCCGCTCCCCAGGAGCGCAGTGCCACCACTGCAAGAAGTGCTCTCTCTGGACAGACCCCACGCAAGATGATGAACGAATAATTCAGGATATTCAGAAGGAGGCAGAAGAGGAATTAAGGAAGAAGAACACGGgaaacaTCAAGTGTGCTTCCAGGAGtAAGAAACTAACCAATGAAGAATGTTTATGTGGCTTTACCCTGGTGGAGCTTCTTTTACAGGATAAAACTCAGGAAAACTCCAGGAAGAAGTCCACCGGGGTGTCACTGCTGCTCACCACAGAAGATTCGTTGCCAACCATCCAGTACTTACCAGTGCAATCTGAGGGACAGAGCAGA
>TU146496
attaaaaataataatNNaaaaaaaaaaaatcaaataaaactcaCTTTTATAAGATATGCAAGTGGAATGTTTCAAAAACTGACCAATACTCTAGGCAAGGCACAACCATTAtcaatttttccatttgtttccataCGTTTTTTGAAAATCACTTCCCACCAACTACCAATTTCCAGTCCAGGGTATGAGATGTCCTTGTGCAGTTCCAGTGAGGTTCATGGCTTTCTTTGAGCACCTACTGTATGTGTAAAGGCACTCCCTTTAGAGTAAATTAAGACTCTTTGGTTAGAGACTACAATGAATTGTAACCATATTCCACAGCACTTGACTTGAGGCCTTTCATTAGATATGAAAAAACTGAATGACATTTGTAGAACCTTAGTGACTGCAGAAATATAGCACCAGGAAATTTTAAGAAAGGAAGGCTGGTTATAGGACATGACTGGATGGTGgcttgttatttgtttaatacagattttattccaaataaagatggagagagacaagGAGAGATGCACAAGAAGAATAATTAAATTCTAAGAAATCTCAATTCCAGGCTCATTCTAGATCACAGTTGGTTCATTTGAGTAAGTATACTGAAGTATTTAAAACTTCACATTTGAAATTCttagcaatttaaatatatagtcaTGGTATAGTTtgtttccccccaccccctttcctTAAACCTCAGGCCATGGTTTTGCCTGTAAACTAATTGTGCTGTCATATTGACggacaacaaacaaatcacgcAAAGTGGTTGTGGGCTGACCCAGCAATATGCAACGCTGTCTCTGCATTGAAATAGGTCATCTTGCAGCGGAGTGGGTTCCAGTTTTTGAATCGGCTTTGCTGTTAAGTTGCttaagcaaaaaacaaaacgccaacattaaaaataaaaaaataataacaaaaaaaaaaaaaaacatctaaatgaTAAACACTGTGCCTTTAAAAAGTACAAGTTTGGTAATTATTCCAGTAATTCAAAGGATTGTGCATTTAACAAATTTGTTTCTGTGAAGCTTTTGTATTATAGCAACAGCGGAGCACAAAAAGCAATCCTGCCATGGATTTGTGTGGTTCAAGGtgaatcatttaattttttatacaattatataatatgttGAACCTGCAACAACTTCAGATctgcaattaatacaaattgtaaacCTATGACTACAGAGTACCTCTTTTAACGGCAATGAAAGGAACTCGTCAATTGCAAGAACAGGCTtaaatttgcctttttttttttaccttagcACAGGAATTTGATTGTAACATTTGGCCAGATATTGTGAGATGAGTAACACATCGTGCACACACTTCAGCTCAGAACACATTATAAGCATTTCCAGTTAAGTTTTTCTTCAATGAGACATTAACAACCGTTTTATGGCACAAAAGAAATAGTAAACAACATTagatcattacattttatgttgaTTTTTCACATTACAAAGGTCTTGGTTGAATATCCAACAGAAATCAATGTACAGGATGCTTTGTGTAATGCTGTGGGGGGGCATTTGAAAGCTATTTTTACCTttctaacaaatactgaatcaaaaatatggtaaaaattatattaaaaaaaaaaaaaaatcaaatcaaactagTCATTCTCACCAGAACGTAGataaatactgtaaacaaagacctttcaattttaaatactgaGAAAGCTTAAAACCTTGAAATGACAGGACTGTTGGCTAGGCTCCGCACTGTATTGAATAACAGATGGTTCCCAAATGTTGGCATGTTTATTTATGCACTGCTTTcagtttggtttgtttgaatTGCTAGTATTAAAGTAAAAGGACACCCAGTGAAGTGTCCAGAAGACTCCATAACTATCAAACCCATCCAGGTCTGAACGTCCTTTCACCGGTCTTTAGGATTACTGAAAGACAACAGACACAGACCAAAGAAATAGGGGCTCAATGAGAGCTCTTTAGGTTTCAGGTTGGCAGAAAACATAGTAGAAAAGCCACTGGTATTAAAGGCAGGTTTGTTTTAAGCTGCTAAAAGGGAATTCAACAACAGGGAACAAGAACTTATCTGCCAAAGTGGAACAATTGCAGAAATCCTCCCAACTGATTTATCATCAGTGATTTTCTGCCAATCCACAAATGTTTAGTGCACTGCTGGTTCCCATTAGCAACACATAAGCAAGTAGGTTAATGGAATAATACCAttaaatgtgcatcagaaacagtTTGGCCTTTCCAAGCCTGGCACTTAAATCACCTACATTGAACTATGGCCTGCAAGTAAACAGATGTACAGATCACTTAGGTCATTCATAATTCAATCAGGCACCAGGTCAAAGCTTTGCAAAAGCAAGAACAATGAACAAGCCAAGACTTACACAGGCCCTAGGCTTACCACAGGCCTGGTCTAATTGAGGTTTCTGGAAAGGATACTTTGTCTAAAGCCAGTCACTATTCCACTCAGAGTGGGGTACATGACAAGTCCTGAAGGCTAGCAAGTTTAGCAATCCATGGCAGGTCTGCAACCTTTTCAATTATGAAAccccacatgcacacatttgaaatattagaggtaaacaaaaaacaaaaaatttaaacaaaagaaaagccaCAGTAGTTGCTAAAGTGCTTCTAATACTCCCACATTGTGGAGCTCTCAATGCTGTCAGCATTGGCTTTGAGCACGCCAGCATGGTCCCCCTTCAGGTACTTGCCACCCGAGGACTTGATTGCCACCTTGTTGTAGTCACAGAACTCCAGGAAGAAGTCCACCGGGGTGTCACTGCTGCTCACCACAGAAGATTCGTTGCCAACCATCCAGTACTTACCAGTGC
>TU146497
attaaaaataataatNNaaaaaaaaaaaatcaaataaaactcaCTTTTATAAGATATGCAAGTGGAATGTTTCAAAAACTGACCAATACTCTAGGCAAGGCACAACCATTAtcaatttttccatttgtttccataCGTTTTTTGAAAATCACTTCCCACCAACTACCAATTTCCAGTCCAGGGTATGAGATGTCCTTGTGCAGTTCCAGTGAGGTTCATGGCTTTCTTTGAGCACCTACTGTATGTGTAAAGGCACTCCCTTTAGAGTAAATTAAGACTCTTTGGTTAGAGACTACAATGAATTGTAACCATATTCCACAGCACTTGACTTGAGGCCTTTCATTAGATATGAAAAAACTGAATGACATTTGTAGAACCTTAGTGACTGCAGAAATATAGCACCAGGAAATTTTAAGAAAGGAAGGCTGGTTATAGGACATGACTGGATGGTGgcttgttatttgtttaatacagattttattccaaataaagatggagagagacaagGAGAGATGCACAAGAAGAATAATTAAATTCTAAGAAATCTCAATTCCAGGCTCATTCTAGATCACAGTTGGTTCATTTGAGTAAGTATACTGAAGTATTTAAAACTTCACATTTGAAATTCttagcaatttaaatatatagtcaTGGTATAGTTtgtttccccccaccccctttcctTAAACCTCAGGCCATGGTTTTGCCTGTAAACTAATTGTGCTGTCATATTGACggacaacaaacaaatcacgcAAAGTGGTTGTGGGCTGACCCAGCAATATGCAACGCTGTCTCTGCATTGAAATAGGTCATCTTGCAGCGGAGTGGGTTCCAGTTTTTGAATCGGCTTTGCTGTTAAGTTGCttaagcaaaaaacaaaacgccaacattaaaaataaaaaaataataacaaaaaaaaaaaaaaacatctaaatgaTAAACACTGTGCCTTTAAAAAGTACAAGTTTGGTAATTATTCCAGTAATTCAAAGGATTGTGCATTTAACAAATTTGTTTCTGTGAAGCTTTTGTATTATAGCAACAGCGGAGCACAAAAAGCAATCCTGCCATGGATTTGTGTGGTTCAAGGtgaatcatttaattttttatacaattatataatatgttGAACCTGCAACAACTTCAGATctgcaattaatacaaattgtaaacCTATGACTACAGAGTACCTCTTTTAACGGCAATGAAAGGAACTCGTCAATTGCAAGAACAGGCTtaaatttgcctttttttttttaccttagcACAGGAATTTGATTGTAACATTTGGCCAGATATTGTGAGATGAGTAACACATCGTGCACACACTTCAGCTCAGAACACATTATAAGCATTTCCAGTTAAGTTTTTCTTCAATGAGACATTAACAACCGTTTTATGGCACAAAAGAAATAGTAAACAACATTagatcattacattttatgttgaTTTTTCACATTACAAAGGTCTTGGTTGAATATCCAACAGAAATCAATGTACAGGATGCTTTGTGTAATGCTGTGGGGGGGCATTTGAAAGCTATTTTTACCTttctaacaaatactgaatcaaaaatatggtaaaaattatattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018528 False 2730 mRNA 0.48 19 13648885 13727870
TU146496 True 2836 lncRNA 0.37 2 13648905 13688114
TU146497 False 1630 lncRNA 0.33 3 13645368 13688114

Neighbor

gene id symbol gene type direction distance location
AMCG00018525 actb,LOC102799139,LOC103365100,LOC102299797 coding downstream 58298 13583104 ~ 13587070 (-)
AMCG00018524 NA coding downstream 67058 13572366 ~ 13578310 (-)
AMCG00018521 NA coding downstream 399637 13238810 ~ 13245731 (-)
AMCG00018518 NA coding downstream 410684 13227151 ~ 13234684 (-)
AMCG00018517 shmt1,LOC107674655,LOC107581728,LOC107737723,LOC107720052,LOC108257064 coding downstream 421658 13214592 ~ 13223710 (-)
AMCG00018529 NA coding upstream 16119 13743989 ~ 13745104 (-)
AMCG00018531 smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717 coding upstream 55983 13783853 ~ 13832385 (-)
AMCG00018532 NA coding upstream 123541 13851411 ~ 13857590 (-)
AMCG00018535 wipi2,LOC107720064 coding upstream 175749 13903619 ~ 13915955 (-)
AMCG00018546 NA coding upstream 293185 14021055 ~ 14036632 (-)
G116949 NA non-coding downstream 24936 13620223 ~ 13620432 (-)
G116931 NA non-coding downstream 110532 13528696 ~ 13534836 (-)
G116918 NA non-coding downstream 142871 13500718 ~ 13502497 (-)
G116883 NA non-coding downstream 278313 13366574 ~ 13367055 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding downstream 302620 13330891 ~ 13342748 (-)
G117011 arpc1a,LOC107388895,LOC107674705,LOC107703414 non-coding upstream 158439 13886309 ~ 13887367 (-)
G117012 arpc1a,LOC102781765 non-coding upstream 159551 13887421 ~ 13890103 (-)
G117015 arpc1b non-coding upstream 169630 13897500 ~ 13966269 (-)
G117066 NA non-coding upstream 367421 14095291 ~ 14100107 (-)
G117122 NA non-coding upstream 504926 14232796 ~ 14233624 (-)
AMCG00018522 NA other downstream 388118 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 1354824 12287568 ~ 12290544 (-)
G116577 NA other downstream 1734032 11911014 ~ 11911336 (-)
G116428 NA other downstream 2442480 11199578 ~ 11202888 (-)
AMCG00018440 NA other downstream 2498428 11088174 ~ 11146940 (-)
AMCG00018555 LOC107689851 other upstream 514675 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 775533 14503403 ~ 14520875 (-)
G117377 NA other upstream 1008268 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1770792 15498662 ~ 15518315 (-)
G117784 NA other upstream 3281028 17008898 ~ 17009301 (-)

Expression


Co-expression Network