AMCG00018531 (smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717)


Basic Information

Item Value
gene id AMCG00018531
gene name smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13783853 ~ 13832385 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018531
ATGTCGAATCCTGGGACTCGAAGGAACGGGTCCAGCATCAAAATCCGCCTGACAGtattATGTGCCAAGAATCTGGCAAAGAAGGATTTCTTCAGGTTACCTGACCCTTTCGCTAAAGTAGTAGTAGACGGATCCGGACAGTGCCATTCCACAGACACAGTCAAGAGCACATTGGAACCCAAATGGAACCAGCATTATGATCTATATATTGGGAAAACAGACTCCATTACCATCAGTGTATGGAACCACAAGAAAATCCACAAGAAACAGGGAGCTGGCTTCCTGGGCTGCGTGAGACTGCTTTCCAATGCAATCAGCAGGCTAAAGGACACTGGTTACCAGCGTTTGGATCTATGCAAACTAAACCCCACTGACAGCGATACGGTCCGTGGTCAAATTGTAGTGAGCTTACAGACTCGGGATCGTATAGGTAGCGGGGGACCAGTTGTTGATTGTCGGGGACTTTTAGAAAATGAAGGACCGGTGTATGAGGACTCTGGGCCAGGAAGGCCGCTCAGCTGTTTCATGGAGGAGCCTTTGCCATACACAGACAGCACAGGAGCTGCAGGCGGGGGAAACTGCCGCTTTCTAGAGTCACCCAATCAGGAACAGAGACTTCAGGCACAACGAATCAGAAATCAAGAAGCCAGAGGTCATGCACACACCCCTCAAACCCGACCACATGGGCACCAGTCACCTGACCTTCCTGAGGGTTACGAACAAAGAACAACAGTTCAGGGCCAAGTTTATttcctgcacacacagactggTGTAAGCACTTGGCACGACCCACGAATACCAAGAGACCTCAACAGTGTGAGCTGTGAAGATTTAGGACCTCTTCCTCCAGGCTGGGAGGTTAGAAGTACAGTGTCAGGAAGAATATATTTTGTCGACCATAACAACAGAACAACACAATTCACAGACCCAAGGTTACATCATATAATGAGTCAACAGTCTCAGGTAAAGGAGTCAAGCCAGACGCTGCCCGTGCAGAATGAGGTCTCTACGGAAGAGGGTGAGGGGGAGCTGCCAGTGCGCTACGAGAGGGACCTTGTCCAGAAACTCAAGCTGCTCCGGCACGAGCTCTCCCTACAGCAGCCCCAGGCCGGGCACTGTCGCATCGAGGTGTCCCGGGAGGAGATCTTTGAGgaGTCATACCGACAGATCATGAAGATGAGGCCTAAAGACCTGAAGAAACGACTTATGGTGAAATTCCGTGGAGAGGAAGGACTCGACTATGGTGGAGTGGcaagggaGTGGTTGTATCTCCTTTGCCATGAGATGTTAAATCCATACTATGGACTCTTCCAGTATTCTACAGATAACATCTACACTTTGCAAATAAATCCAGATTCTTCAATAAATCCAGATCATTTGTCATATTTCCACTTTGTTGGACGGATAATGGGCCTGGCAGTTTTTCATGGGCATTACATTAATGGAGGTTTTACATTGCCATTCTACAAGCAGTTGCTGGGGAAGCCCATACAGCTGTCAGACCTGGAAACTGTGGATCCTGAGTTACATAAGAGCTTAGTTTGGATCCTTGAGAATGACATTACCCCAGTTTTGGACCATACGTTTTGTGTAGAGCATAATGCATTTGGCAAATTTCTTCAGCACGAGCTCAAACCAAATGGTAGAAACATTCCAGTAACGGAGGAGAACAAAAAGGAATATGTAAGgcTCTATGTAAACTGGAGGTTTATGAGAGGGATTGAAGCTCAGTTTCTTGCTCTACAGAAGGGCTTTAATGAGCTGATTCCACAACATCTATTGAAACCTTTTGATAACAAGGAATTAGAGTTAATCATTGGAGGCCTGGGAAAGATTGACTTGAATGACTGGAAGGCCAACACTCGGCTGAAGCACTGTGTGGCGGACAGCAACATTGTCAAGTGGTTCTGGCAGGCGGTGGAGTCCTTCgatgaggagaggagaggacggCTGCTCCAGTTTGTCACTGGCTCTACCCGCGTCCCTCTGCAGGGGTTCAAAGCACTGCAAGGTTCTGCAGGACCAAGACTGTTCACTATCCACTTGATTGATGCCAACACCGACAACTTGCCTAAAGCCCATACCTGCTTTAATCGAATTGACATTCCACCGTACGAATCGTATGAGAAGTTGTATGAGAAGTTATTGACTGCAGTGGAGGAGACCTGTGGGTTTGCTGTGGAGTGAGGAGACCCCCGGTACAGGCTGCTTAGTGATGAGCAGAAACCAAATCACCCAAGAAGGCATGTTCTGTGGGCTTCCTGCTGAGCAGCGTGTAACGAGACAACCGTAACCGTTAGGCCTGGGGACACCGCCCAGAGCAgcagtgtgagggagagaggtaACTGTCAGTGGGTACACACCGAAAACTTTCTACGGATTTTAGGAGTATTTATTCTTTGTGTGGTTTGGGGGGCTGCTTTAACATGAAAGGTTTCACTAACAATGTCCTTCTCGAAATCAACTCTGTGCTGAATAGGTCATTGAAATCTTTATTTCTAGTCCTAAAGCTTGGTTGTGATTTAGCACATTTGGGCTGCTTAGCTGCAATAAACCCAATCCCACCCACTTTAACCAGTTGTCTACATCAAGCTGAGGTCATTTATATGGGCATATTATTTGCCTCTAGGCCTAATTGATAACAAAGCCAATCTACCTAAAGCAAAATCTTGCTTGAATAACTAGCGCAAAgattaaatactttaataacaTAATTTTCAGAATCGTATggtatgtctgttttttttctcactgtGTCCATTTCaaggtatttttatatttcttgtttgAATACTAGAAGATGGCTTTGTACATTTTAGGCTTATGACCAGATACCCATTTCCTGTCTGCcacattgttttattgacaCCCAATTGCTTGTTGCGTGaaatttataaaaaagaaaatgtatgtatttttgactGATAAGAATGCAAATAATGTCATGACAAAGACTCATAAAGGTTAGTCTTAGACCTCCTTAGTGACATATTGACACATATTTTGCTGCCAAAAATGTGCAGGGAAAATGTAGATCCCCTACAATTCTGGCCTTTTCTCCACAGAAGAGATGCACCTTTGGAGGAGTCGATCAAATTAAATTCCGATTAGAAAGgcagctttttaatttttttttttttctccttttcaagATTTAAGCTTTAAACTTTATATAATGATTTGCacaaaggattattattattattattattattattattattattattattattattattatcatagttttgttttttaatgtaatgctatTCTAGTGTCTTACAATGATATAAGCATGAAAGATTGCACAATTGGAATAGGTGAAAAGTATACAATACTGGGGAGCTGAGATGAACATTTTAAGTATGAtctttacatattatatatatattttattttatttttttataaagggaAGAGTGCAcccactaaattaaaaaaaaaaaagaataacttTTCAAATCTGCCTGTCCATGAAATATCTTGTAAACTTCAtactgtttgttttagttatggGGAAAACCGTAGTGTTTAATGGGTAAAGTGgccttttaaatgcaaaataacagGTATGTTTATACACATACAGCAATTTATAATAAATCTGATTATAGTAGGTCCACTGTTCCATTTAATaggaatgttttcttttttatttgcacaaaaaaagaaagaaaagagaggggGCAGTATTACAAAACCATCTGGAGTCTTACATGAACCATGACAAACCAACAATATGCCAGAAGAGTGTGTCCCTCCTTGATAGACAGGGACAAGACTAGAAAGTTGAGAACAGTTCTTATATTCTTCAATTTTAGgttttatagttaatttgtcttCAGGAAATCGCACTACAGTGCTTTCAGTTTTAGCATCATCTTTTCCAAGTCAAAACAGACTTATGATATTCTGATATTCTGCAGCTGTTAGAAATTGAAATGGTGCCTCATTTTATTAAGCAGGCCTGTGTTTAATGAGTGAATGTTTGCAGCTCCAGACTCTTTCTAGGTTTGACTACAAAATGAATTCACTCTCATGTGTCCAAACACATTTTGTCTTGTAATCAGGTCATTTGTTGTTGGACAAgatgaaacaaaccaaataataataattaataataataataataataataatatgtccaAAATGTtcattgtatgttttgtaatgaaCAAATGTAGATATGTTTAGCTACCAAGActttgtactactactactttgcAAATTGGATGAAAAAGCTTGAGTTCCCCATATCCTTCAGGCAGATAGGAATAAAACTGGTAAAACcagacagaaaaactaaaagagaGGTCTAAGATTTCAGTGCTTGAAGTGCATGGCACCatattattctttttatattgaaaaaatgaGCCAACTTCATTGTTTTAAGTGTTCTGCAAccacttgattttttttttttttttactaattatttattactatgtaatgtcattttttaagtattgctgctatcattattattccctacttttttaaaaagctgattATTTGTGAAAGCTGTACACTAAtctctttattttatgtataaatcaaagtatttaaaaactgCTGCTATTATAATATTAGGTAAACCAGTAGAAGACCTTGAAGGTAGACAGATGGAGTTAGCAGTGATCTAGGCTCGACCCCGGAGGTCACATTCATGTTTGTGATATATGCAATAAAAACTGACAACTTTATATACGTGTTTTGTGTTaacatgtcatttattttacattctttaACTTAATGAAAACCAGCCCACTCTTCTTTAATTCAGACGTTTTGCTCAGTGCACAAACAGCTGTACTGGATCAGAAGCACATTTCACATAAGAAACCCAGTCCACAGCTCTCAGCTCTCCATACACAGAGATGGACATTAAACAATGTACATGGGTTTATGGAtgaaaattgaaatttataaaaTTTACATCTTTTGTGACTTGGGTGCTGATttttagataaaaaaaagaatttattaatttacatccTCCTACACCCTTACCTAATATGTTCTGTAAGTTGTACATTGACACAATTTCCATTACCTGTACAATTCTAAGCAATGATTGTTTTCcgattcaaatgtaatttttttcacTGGCTGCAAACCATGTAATTGCTcatatttgtgaaatatttatagaaaatgtatataaaaataaaaaagtaataaatataacatttgaagTATATCcttctgttgcatttttttaaactacattcACCTCtgaggattttgttttatctgtgcAAAGACATGCATTATACaccatattttatgtatgtatatgaacaATTTACTAAAATATTCAATCTTGTGGGATTGAGCATATATGTGATATACGAATGTAAATCATGTATTTGCACTTAGATTATTTATTCACTTGATTGAAATAGCACATAAATCTATACATTTGCTTACAATCCCAGATCATATTACACTAGAATGAATTGTTTTTCAGATAGTTAatcattcttcttctttatactgtaaaacagtttaatgcgAAGACCTTTAAATAAAGTCCAAAgtactaatgaaaataataccAACAAAGTTAGAAGGAATGCCACAACATCCAGCATATAATACTGGTAGAAAGGCAGGTCATTACCAGCTGCTCTGAGGTGGACGGCGCCTTTGTGCCTCATGACATATTCAACCCAGAAAACAGCCAGTGCTTTAGGGGGAACGGGTACGTCTCTGTGCACCTGAGACAACTTTCTCATATTCGATTTGTAAGAAGGATCTTCTGTAATGATCCGAATGGCATTGAAAATGTCATGTCTTGTCAGttggtttacattttcaattagaaCTGCTGCCCCTTTGACTTTAAGCCGCAGAAGATTTTCATAGTTATCAGCATAAAGTGGAAAGCCAACTACTGGAACTCCGTGATAGATTGCCTCGTAAATCCCATTTTCACCACCATGTGCTATGAAAACCCTGGTGTTGGGATGGCTTAAGAGGTCATTTTGAGGCAGCCAACTAAGTACCTTGGTGTTGTTTCCCAAAGTTGAAATCGGTGGTCCACTGTAGCGCCACACAACTTTCTGTGGTAGTTTTGCAAAGCCGGCAGCTAACTCTGTGGCCACTTTTTCTGGTAAGGTTGGAATTAAAGACCCTAGAGAGAAGACTGCAATGCCATCTTCTCCAGCATCATCCATGAATTGTTGCAGATCAGAGGGCAGAGGTTGTGGCGGTCTGCACTGGAATCCCCCGATGTAAATTGCATTGGGCATAGTTGGCTTTaaaaattcaaatgcaaaatccACTTTCATCAGGTATATATCTGCTTTAGTATACAGTTCGTATATGCTTTTATCTGTTTCCAGGTAACGTTTGCAGAGTGCATCGTAAATTGAATAGATAAAGATCCGACTCCAAACTTTTCCGAACATGTACAAAAGGACGTTTTTAAGTCTCTCAGAAAATGCCATTCTGTCGGTTAATCTTGAATTTAACACCGGAACGTAGGAGAGGGGTGAGGGGGCGATCGCAAAGTGTATATCTTCAGTGGGCATCCATCTGCCAAACAGAATCACAGGTAGGTTTAAATATCGCGCCAACATCAGGCCCCCTGGATAGAAAGAGTCTGCCAGCACGAGGTCAAATGCAGAGGCTTGTAATTGCTTCAGAAGTTGGAGGTTCTCAAATGTTGTCTCTATGGCGATCTCATAATCCTGACTTACTGtcttcatcattttaaaaaagtaCCAAAACGCAGATATGGACTGGCTCTCCATGTTGAAGGCAGTGTGTAATATCCAGGAGGCagcacttttttccttttcttccttgGTTCTGACTTGCTCCCCAGGAAGTTCGATTGTAACTACTTTAAAGTCGGTGGAGTCCTCCTCTATGTTAATAGAATTGGATAACCTCAGCACTGTCACTTCGTGGCTTCTCCCCACAAGCTCTAGTATCAGTATTTTGATGGTATTCCAGTGACTCCCGTCCACAGGTACTACCAGTACTTTTCCTGCATTCACAAGTCCATTATGCAGAACAACTATAGTGAACCAGGagcagattgaaaataaaaacatattttttgtcattgctaGATTATATAATAGTCTTAATTTCTGTTTCTTGTTGGTCATCCAGCTACTACTCACTGAGCTGCACAGTCTGATTGAGTGTTTTTCCACTG

Function

symbol description
smurf1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including negative regulation of BMP signaling pathway; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Is expressed in alar plate midbrain region; axis; midbrain; neural plate; and notochord. Orthologous to human SMURF1 (SMAD specific E3 ubiquitin protein ligase 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase SMURF1 isoform X2

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K04678 SMURF; E3 ubiquitin ligase SMURF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018531 True 7177 mRNA 0.39 18 13783853 13832385

Neighbor

gene id symbol gene type direction distance location
AMCG00018529 NA coding downstream 38749 13743989 ~ 13745104 (-)
AMCG00018525 actb,LOC102799139,LOC103365100,LOC102299797 coding downstream 196783 13583104 ~ 13587070 (-)
AMCG00018524 NA coding downstream 205543 13572366 ~ 13578310 (-)
AMCG00018521 NA coding downstream 538122 13238810 ~ 13245731 (-)
AMCG00018518 NA coding downstream 549169 13227151 ~ 13234684 (-)
AMCG00018532 NA coding upstream 19026 13851411 ~ 13857590 (-)
AMCG00018535 wipi2,LOC107720064 coding upstream 71234 13903619 ~ 13915955 (-)
AMCG00018546 NA coding upstream 188670 14021055 ~ 14036632 (-)
AMCG00018545 NA coding upstream 209256 14041641 ~ 14063120 (-)
AMCG00018548 foxk1,LOC107720067,LOC107703411,LOC107748300 coding upstream 257411 14089796 ~ 14090200 (-)
G116949 NA non-coding downstream 163421 13620223 ~ 13620432 (-)
G116931 NA non-coding downstream 249017 13528696 ~ 13534836 (-)
G116918 NA non-coding downstream 281356 13500718 ~ 13502497 (-)
G116883 NA non-coding downstream 416798 13366574 ~ 13367055 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding downstream 441105 13330891 ~ 13342748 (-)
G117011 arpc1a,LOC107388895,LOC107674705,LOC107703414 non-coding upstream 53924 13886309 ~ 13887367 (-)
G117012 arpc1a,LOC102781765 non-coding upstream 55036 13887421 ~ 13890103 (-)
G117015 arpc1b non-coding upstream 65115 13897500 ~ 13966269 (-)
G117066 NA non-coding upstream 262906 14095291 ~ 14100107 (-)
G117122 NA non-coding upstream 400411 14232796 ~ 14233624 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 55983 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 526603 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 1493309 12287568 ~ 12290544 (-)
G116577 NA other downstream 1872517 11911014 ~ 11911336 (-)
G116428 NA other downstream 2580965 11199578 ~ 11202888 (-)
AMCG00018555 LOC107689851 other upstream 410160 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 671018 14503403 ~ 14520875 (-)
G117377 NA other upstream 903753 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1666277 15498662 ~ 15518315 (-)
G117784 NA other upstream 3176513 17008898 ~ 17009301 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026670 smurf1 coding NC_007114.7 CM002887.2 40690212 ~ 40768548 (-)
grasscarp (Ctenopharyngodon idella) CI01000046_03680288_03699097 SMURF1 coding CI01000046 null 3680288 ~ 3699097 (+)
rainbow trout (Oncorhynchus mykiss) LOC118947900 LOC103393300 misc NW_023493684.1 JAAXML020000838.1 300140 ~ 365061 (-)