AMCG00018532


Basic Information

Item Value
gene id AMCG00018532
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13851411 ~ 13857590 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018532
AGGAGGGCCTTACCAACCACAACCAAGCAGTGAAGACCCGCACCTGCGCCACTTCGCCTTCCGCCTCCACGCTATTTAAACTGACCAGGCGCCCAAAAGCAAACGAAAAACGGTAGTCGAGCGCAATTGAGCATTTGTGGTCCTCTTGGACGAAAGACGttgAACTGCACCCCCTTTAAGTATGCCGACCAAAAATGAAGGCGACGAGCGATTGACCAAATTCAAGAATAAAGGGAAGGACCCTGCTAAACTCCGGCGCAATCGGATTGAAGCCACTGTCGAGCTGCGCAAAGCTCAGAGGAACGAGAATATCCTGAAGCGCAGACACATTTCCTCTCTGCCAGAAGACAACCCGCTTTCTCCCGAGCTCAGGGGGGACGGCAAGGAGTTCATTGCAGCTGCTCTTAAAGATATTCTCAGCTGTGTGAACAGTGATGACAAAGAGCTACAAGCACGTGGGACTCAGGCAGCAAGAAAGCTGCTCTCCCGTGAGCGAGACCCCCCTCTCAAGGAGGTCATTGAGGCTGGTCTGATCAGCCGCTTTGTGGAGTTCCTGGGCAGGGAGGATGAGACGGTGCTGCAGTTCGAGTCAGCCTGGGCTCTCACTAATATTGCCTCTGGCACGTCCTGGCACACTCAACAGGTTGTGGAGAGTGGTGCTATACCGGCCTTTATTGCCCTGCTCTCTTCACCAGTGTTGCATATAAGTGAGCAGGCAGTGTGGGCCTTGGGAAATATTGCAGGTGATGGTGCAGCTTATCGTGATGCTCTGATTAACTGCAATGTCATTCCTGCGGTGCTAGCAAGAGTAACTCCCGATACCCCTGCTGGATACCTTCGTAACTTGACCTGGACCTTGTCAAACCTGTGTAGGAACAAGAACCCTTACCCTCCTATGTCAGCAGTGCAGCAAGTCCTGCCCACACTGATGCAGCTCCTTCACCACGATGACAAGGAAATACTGTCCGATGCCTGCTGGGCCATTTCCTATCTTACGGATGGCTCAAATGACCGCATAGACGTAGTGGTGAAGACTGGTATTGTGCCCCGACTTGTGGCCCTGATGGGGTTTGCGGAATTGTCCGTTTTGACCCCAGCTCTCCGGTCCATTGGGAATATTGTAACTGGAACAGACTATCAAACTCAGATTGCCATAGAAGCAGGTGTGCTGTCCGTGCTGCCTCAGCTCTTGCGCCACACGAAGCCCAGTGTACAGAAGGAAGCTGCCTGGGCTGTGTCCAACATTGCAGCTGGGCCTTCACCACAGATCCAGCAGCTCATCACCTGTGGCCTGCTTCCTCCCCTTGTTGATCTGCTGAAGAATGGAGATTTCAAGTCTCAGCGAGAGGCAGTGTGGGCCATCGCCAACTACACCAGTGGAGGGACAGTGGAGCAGGTGGTCCAGCTGGTCCAGAGTGGAGGTCTGGCAGCTCTCCTGGATCTGCTGCAGATCAAAGACAGCAGAACCATCCTGGTCATCCTTGATGCCCTTAATAACATCTTCCTGGCTGCTGAGAAACTGGGGGAGATGGAGAAGCTGTGTCTGCTGGTGGAGGAACTGGGAGGGCTGGACCACATTGAGCACCTGCAGAACCACGAGAACGACTCGGTGTATCGAGCAGCACAGGTGCTCATAGAGAAGTACTTCAATGAGGTAGGCCTTCAAATGTTTCATGGTGTGGAAGTGTAA

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018532 True 1690 mRNA 0.53 10 13851411 13857590

Neighbor

gene id symbol gene type direction distance location
AMCG00018531 smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717 coding downstream 19026 13783853 ~ 13832385 (-)
AMCG00018529 NA coding downstream 106307 13743989 ~ 13745104 (-)
AMCG00018525 actb,LOC102799139,LOC103365100,LOC102299797 coding downstream 264341 13583104 ~ 13587070 (-)
AMCG00018524 NA coding downstream 273101 13572366 ~ 13578310 (-)
AMCG00018521 NA coding downstream 605680 13238810 ~ 13245731 (-)
AMCG00018535 wipi2,LOC107720064 coding upstream 46029 13903619 ~ 13915955 (-)
AMCG00018546 NA coding upstream 163465 14021055 ~ 14036632 (-)
AMCG00018545 NA coding upstream 184051 14041641 ~ 14063120 (-)
AMCG00018548 foxk1,LOC107720067,LOC107703411,LOC107748300 coding upstream 232206 14089796 ~ 14090200 (-)
AMCG00018540 LOC103397138,LOC107554284,LOC100698873 coding upstream 285586 14143176 ~ 14152386 (-)
G116949 NA non-coding downstream 230979 13620223 ~ 13620432 (-)
G116931 NA non-coding downstream 316575 13528696 ~ 13534836 (-)
G116918 NA non-coding downstream 348914 13500718 ~ 13502497 (-)
G116883 NA non-coding downstream 484356 13366574 ~ 13367055 (-)
G116875 slc29a4,LOC108430547,LOC107104199 non-coding downstream 508663 13330891 ~ 13342748 (-)
G117011 arpc1a,LOC107388895,LOC107674705,LOC107703414 non-coding upstream 28719 13886309 ~ 13887367 (-)
G117012 arpc1a,LOC102781765 non-coding upstream 29831 13887421 ~ 13890103 (-)
G117015 arpc1b non-coding upstream 39910 13897500 ~ 13966269 (-)
G117066 NA non-coding upstream 237701 14095291 ~ 14100107 (-)
G117122 NA non-coding upstream 375206 14232796 ~ 14233624 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 123541 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 594161 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 1560867 12287568 ~ 12290544 (-)
G116577 NA other downstream 1940075 11911014 ~ 11911336 (-)
G116428 NA other downstream 2648523 11199578 ~ 11202888 (-)
AMCG00018555 LOC107689851 other upstream 384955 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 645813 14503403 ~ 14520875 (-)
G117377 NA other upstream 878548 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1641072 15498662 ~ 15518315 (-)
G117784 NA other upstream 3151308 17008898 ~ 17009301 (-)

Expression


Co-expression Network