AMCG00018533 (mmd2,LOC107725363,LOC103909971)


Basic Information

Item Value
gene id AMCG00018533
gene name mmd2,LOC107725363,LOC103909971
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13941628 ~ 13960988 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018533
GGCCCTTCTATTACTTCACCACTTGGAGAAAGGTGGTTTTCTTGCAGATTTGAGTGCTAAACTTACAGTAGCCTTGAGGACACACCCCTCCACACAGTattcATGAATAACAGAGTTCCGTCCAACAAGAGGTATCAGCCGACAGAGTATGAACACGCAGCGAACTGCGCCACGCATGCGCTCTGGATAATTCCAAGCATCCTTGGCAGCTCCATCCTCTACTTCCTGTCTGATGACCAATGGGAGACGATCTCAGCGTGGATTTATGGCTTTGGACTGTCGGGCCTCTTCATTGTATCCACTGTCTTCCACACCATCTCCTGGAAAAAGAGCCACCTCCGGACAGTTGAACACTGTTTTCACATGTTTGATAGGATGGTGATATACTTCTTCATTGCTGCCTCCTACGCCCCCTGGTTAAACCTGCGAGAGTTAGGACCATGGGCTTCTCACATGCGTTGGATCATTTGGATAATGGCCTGTGTGGGAACagcatatgtttttttctttcatgaaagGTATAAGATTGTGGAGTTAATATGCTATGTGATAATGGGTGTCTTTCCGGCCTTAGTGATCCTCTCAATGGCTAATAAAGATGGGCTGTTTGAACTGGTCCTGGGCGGTATGTTTTACGCgctaggtatggtgttcttcaAAAGTGACGGACGCATCCCCTTTGCCCACGCTATCTGGCATGTCTTTGTGGCGATTGGAGCTGGCATCCATTATTATGCCATCTGGAGGTATCTTTACAGACCTGGGagcacagaaatgaaaacatctaGATAACATACCGGGACCATGTGACAGGGAAATCCTGCCCActtaatatgaaatacaaaggTAGAGGGATCATTTTTTCCcattcatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaagctTTTATCTCAAAGAGCTTAGTGAGAAGAGTCttctttttcagattatttaGTTTCAGAGCACTTCTAAAAAGGCAACATGTTGTAGGTCTTGTAGAGTTGTGTGAAAAGGGCCAAggttatttttctgttaatCTCCACGTTAAGATCACTGCAGCTCCTTGGGATCTATTCATtattgcatttcacatttcacagtgtcaatttgaacattaacaaacaacatgttttggttttgttcaatGTCCGATTATTGTGCCAACATGGATTTCTAATTATTATAAGTTTCTTTTCACATCCTTCATGTGGTCCTAATATAATTAAGCGACTAGCCTACTGccaaattcattatttaaatttgcGATAATTAACAAATGCAATATGATAGATAACTCATTTGAAAAATGCCACATGTCAATtgctacaaacaaacaaaacaaaaagcaatacatgtacatatactGTACCCTAAATGTATGCTTAAATATTAGCCGTCTTCTAAAAATCAAAAGCAGTGTTTATTTAGTTACATTGTATTCTCAAACACGGTACATTGCTGTTTTCCATGAGGCAGTTGATCCACCAAAAAATACCAGCTTTACACTTTAACAAAATAGAACAAATAACAGAATTcatgccattttaaattaaatcagtgatAAAAAGGCATCACAATTCTTAGTGTCTGTATAACTTAAAAACAAGGACAAACTTGGTATGCATTAGtcatttttaatctaaaaaaaataaaaattactaATAGAGCCCTTTGTTTAGATGGAATTAGTGACTTCATGATTTGGTATAGCATTAAGACTGTTAAAATTGAAGAGCAatcatatttttacaataatattcATCCTTAACTTTAAAGGTGAAGGCTCTGTCTTCACAATGGCAAAAACGTTTATTATTagccagtgaaaacaaaaaggtttcGTAGACTGCGTGAGCAAGGTGACAGAACACTTTTaactttttccctttttacattttttaattttccctgTTACCCAACACATTTTAGGTGCCTTTCTAACTTTCTAAATGGACTTCATAATTCATTGATAGTCCTGTAAACTACATCCAGTGTGTCCTAGCTCTCGGTAAATCAATGGCAAGATTACTCAGTGACAAACTAACATATATTCTGTAGATTCACTATTAAGGTGTTTTGGTTCATCTTGCAGGCAAGGCTAAATTTATAGCAAAACTCACTGCTGCAAGTGTCTGTAATACTTCCTCTGTGAGCTGCCTGATGACTCAGACAGGGAAGTATTTTCTGTGTGGCACcacttgtgtttttatgagatgtatttttcatatggATGTCATGCTCACTTAGATTTTGGTCTTTCTGTGTGCTTATGAGCAGCAAACTAGCAGCTTGAATGTTGAAGAATCCCACCACTAGAAGCCTTACCAAACCTCAACACTAAGAATGAAAGGGTGCTTGGTAGGACATCAAACGTACCGTGTGTTCCTTCACAAGAGTATTATACAGGTTCTTAATTTTCCAGTTGGAAATAGTAGAACAACGccaaaaaacaagaatattgaaaaaggaaatgcagaGTACAGCTACATTATTGGGACCATATTTAACATTACttttcaacacatttatttgtctttagtTGCTACAGTGGCAGTGTTTGGCAACCAAAATAGGATTTTAGTAGATTTGATTTCTACTGTAATTATGCTTTTGCTTAAAgttctaatttaattaacatatttgacAATACTGTTAGTACCGTTTCCAGAATTATGTAAAGGTACTGTGTTTCGAATGAACAGAGAGATTATAGAATCTGTATCTGAAATCAATATATGAAGTGTTATAATTGTAGCTTTCTTGAAATGGGAGAACACATTACAGTAGATGATTGTATCTTATTCCTTGAATCACAAATTAAGTTTACATCAAaggtactgtttttttttttatttttttactattttccttttaaaacaagCGAAAACCTGCA

Function

symbol description
mmd2 Enables protein kinase activity. Involved in several processes, including positive regulation of Ras protein signal transduction; positive regulation of neuron differentiation; and positive regulation of protein kinase activity. Located in perinuclear region of cytoplasm.

NR:

description
PREDICTED: monocyte to macrophage differentiation factor 2

GO: NA

KEGG:

id description
K11064 MMD; monocyte to macrophage differentiation protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018533 True 2898 mRNA 0.37 7 13941628 13960988

Neighbor

gene id symbol gene type direction distance location
AMCG00018534 arpc1a,LOC107720063,LOC107674705,LOC107591778 coding upstream 38967 13885780 ~ 13902661 (+)
AMCG00018530 LOC108430595 coding upstream 63563 13859895 ~ 13878065 (+)
AMCG00018527 NA coding upstream 156079 13782714 ~ 13785549 (+)
AMCG00018526 fscn1a,fscn1,LOC107742378,LOC107581720,LOC107674660 coding upstream 292536 13639723 ~ 13649092 (+)
AMCG00018523 tnrc18,LOC107742388 coding upstream 406801 13468893 ~ 13534827 (+)
AMCG00018536 NA coding downstream 11562 13972550 ~ 13985601 (+)
AMCG00018547 NA coding downstream 150716 14111704 ~ 14111910 (+)
AMCG00018539 NA coding downstream 198675 14159663 ~ 14161738 (+)
AMCG00018549 NA coding downstream 231150 14192138 ~ 14200344 (+)
AMCG00018552 LOC108412053,LOC101077666 coding downstream 270002 14230990 ~ 14232314 (+)
G116976 NA non-coding upstream 94536 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 101657 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 250261 13666023 ~ 13691367 (+)
G116882 NA non-coding upstream 574600 13366640 ~ 13367028 (+)
G116790 NA non-coding upstream 726276 13129738 ~ 13215352 (+)
G117130 NA non-coding downstream 281876 14242864 ~ 14244203 (+)
G117131 NA non-coding downstream 283720 14244708 ~ 14245318 (+)
G117197 NA non-coding downstream 477004 14437992 ~ 14439091 (+)
G117209 NA non-coding downstream 572975 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 775108 14736096 ~ 14738327 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other upstream 594751 13307898 ~ 13346877 (+)
G116832 NA other upstream 685834 13253343 ~ 13255794 (+)
AMCG00018498 NA other upstream 1329749 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 1421297 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 1441574 12489467 ~ 12500054 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other downstream 36921 13997909 ~ 14022806 (+)
G117033 NA other downstream 85271 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 180389 14141377 ~ 14145995 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other downstream 228015 14189003 ~ 14191077 (+)
AMCG00018551 NA other downstream 278254 14239242 ~ 14242717 (+)

Expression


Co-expression Network