AMCG00018535 (wipi2,LOC107720064)


Basic Information

Item Value
gene id AMCG00018535
gene name wipi2,LOC107720064
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13903619 ~ 13915955 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018535
CAGCTGCGCATGCGCGGCGAGAGAAAGCAACAGCGTTggagcaaaacaacaacaaacgtTGGAACAAGGGGGCAAGGATGCGGCGATGATGTGTATCGATTAGTAATACAGGCAGGATTGTCAATTCCCAGACCCCGATTGCTGTGATTCCCGACGATATTATATCTGTAGATGGTGTCGTGCCCATGAACCTGGCCAGTCAGAGCGGGGAGGCCGGCTGCAGCCAGCTCCTCTTCGCCAACTTCAACCAGGACAACACGTCCTTAGCTGTTGGCACTAAATCTGGCTATAAGTTCTTCTCTTTGTCTTCAGTGGATAAACTAGAACAGATCTATGAATGCACTGATACCGAAGATGTATGCATTGTGGAAAGACTTTTCTCCAGCAGTCTCGTTGCTATTGTCAGCCTTAAAGCGCCCCGGAAGCTCAAAGTGTGTCACTTTAAAAAAGGAACAGAGATCTGTAACTACAGCTATTCTAATACTATTCTGGCTGTTAAGCTCAACAGACAGAGGCTAATAGTATGTCTGGAAGAATCTCTTTATATCCACAATATCCGGGATATGAAAGTCCTGCACACCATAAGAGAGACCCCTCCTAATCCTTCAGGCCTTTGTGCACTTTCaattaataatgacaattgCTACTTGGCATACCCTGGGAGTGCGACTATAGGAGAGGTGCAAGTTTTTGACACAATAAATCTGCGTGCTGCTAATATGATTCCAGCTCACGACAGCCCCTTGGCAGCACTGGCGTTTGATGCAAGTGGCACCAAACTTGCCACAGCCTCTGAGAAGGGGACTGTGATCCGAGTTTTCTCCATTCCAGAGGGACAGAAGCTGTTTGAGTTCAGGAGGGGAGTGAAGAGGTGCGTTAGCATCTGTTCTCTTGCATTCAGTATGGAAGGACTATTCCTGTCTGCCTCCAGCAACACTGAAACAGTTCATATCTTCAAGCTGGAAACTCAGAAAGAGAAGCCACAAGAGGAACCCACAACCTGGACTGGCTATTTTGGAAGAGTGCTGATGGCCTCTACTAGTTACTTGCCATCCCAAGTCACAGAAATGTTCAACCAAGGCAGGGCTTTTGCCACTGTTAGACGGCCATTTTCAGGGCACAAGAACATTTGCGCACTTGCAACAATCCAGAAGATACCACGTCTCTTGGTGGCTGCAGCGGATGGTTACCTTTACATGTATAACCTGGACCCCCAGGAGGGGGGGGAGTGCACACTAATGAAGCAGCATAAGTTGGATGGCAGTGTGGAGCCAACCAATGAAATGCTTGAACCGACACCACATGACCGTCCACTCGTAGCACAAACCTACAGTGCTGCTGTGGCCAAAGGCTACTCTGAAGACCAGGGAGCGGTGGGAGGCGCTGGCATAGAGGACGACATGAGCTCCCTGCGGCTCGACGAAGAGAACGAACAACCTCCCATGATCCTCCAGACCGACTGAGCGAGCATCGGCCCTGTGGACTCGGTATTGGAGCTGGGGAGCTGTGTGACATTGTTGAGGAGATCTCTCTTGCTGTGCTGCTACGAACTTGTAACAAAGTGGAAGAGAGATGAAAGGAGCGAGAGTTTTAAAATGAGCCTAGCTGTAGCCTAATTCTATCtataatgataaatatatatattgtttttttgatttttatttttttccccagtggCTTTTAAATCTTGCGAAACTTATACTTAGCTGTACTTTGTtttctgcttaaaaaaataaaaataatgtatatgaagCTGCGTGGCACAGCTTATGAGCCTCTTAGCTTTGCATGTATACATGTGCCAAGTATAGGATTGCTAGAAGATACTTTATTTGCATTCACGTTTGATGGCTTCAGACATACGGTGGACCCTACTCTAACAGCAGtcaaaagttttgttttggtgtacATTTTTGGCGAGAATGAGTAAAGGCATAATGTGCCAGCTTTACAGTGTACAAAGTCATGTCCCCATAATCTCCTATTTACATTCAGATGGGAAATATCTCTTCACTACTTCTGTGGATGTTCTTTAAACTGTAGGTGGAAAACAATCTCTGACAAAGCATGAACAACAAACATGATGGCGCTGCTGTGCAGCTGCGTAAACAGGAAAGATTTGCAGATTTCACCCTTTACTAGACACACTTCAGGGACGTGATGCCTTGAACCCCACGAGATGCTGTTTATACCTTTAAAATGGATGCCGATGACATTTCTGGTTGCGTTTATCCCAAAGAAATTGGCACAGACTATTTTTTTGAAGGATAAtctaatattatatttaatttctgtttagCATACTGTTATTTCTTTGCTTATTGCAGCTGTTACTCTACCCTGTGCTTTTTATTACAAGGAATGTTGCTCACATTTTAAACTGTCATCTTGCCCACAAAGACCAAGAAAACATGTTTGGTTCTAGCTTTCTGTAGGGCTTCATTaccttttttgcttttattattaatgactcctctttgaaaataatctgttttcaaTGAACAGATCAGTTGTGTGCAAACTGAGCGGGTGAAAAGCTGCTACCTTGATTATAAGTGAAGCTTAAtgttttactgaaataaataaatttagtCCTCAGTACTTCTTTCGCCTGACATAGATttcatgtaatgtattgtaggtgcattatttgtaataatacagtGAACGATACATCATATTTCTATGAACATTTATGGCTGTTTAAGTGTTCTCTGGCAGtcaaatacagtacagataTAACAAATCCCCCCAGAATGTCAGGTGTCtgctggaaaaaattaaaattaagtagGAAAATGTGTCTCtctatataaaaagaaaacctcaTGAATGCCAAAATTAAACTTGTATTCAGTATttactttgtaatgctttttttttttttttcaccccatattttgaaaatgtaattagatTGTACTATTTAACTTCTGATGtaacaaaaggaaattattagaACTGGGATCGTTTGTGTTAGGTACAGACATGATGTCATATCAAAAGGAAAACATCTGTGAAGTGGCTGTGAAAGGGAAACCGCGCCAAGCCAGAATGACTTACATTTGTTAATGAAAGATAAGTGCTGTATTTACATGCACGATTTCATTGGCCACGTTGTCTTCATGTGTAAAGTCAGACTAGTTTCATCAAGGGTGTCTATGAGGGAATCTACTAATCCTCACGAAACTGTTCAGCACAGTAATGTGATTTTGCTCATGCCAGGAAGCTCGCTCAAAATCCATCCATTAAATTGCTCTCGGAAGAATCTCCCTGGAGGTGTTCCATTTTTAAGGAGGCATCAGTAGGATGTGTTGACATCATGCCAAGTTTCATTAGGTCAAAAGTTTGTCTTCAGTTGTGAGTTTGTCTTCTAGAAGGAGACTGTTCTGGAAGAGCTGCATATAGGTTGTATAGGCTGTATAGGTTGgtctgttttagtttatttgatGAAAGATGtctatgtaatgttttattttcccaacTTGGGAATAACAAGGCATTTACTTTAAAGGTCAGGTGTCTGCATCTCTtaaactcacacacatactttaatatttgaaatCATTTCTATGCGCAGTGTAGAACTGTTTTTGAATTCCTTtcactgaataaaaatatattctcagAATTACCCTTTCTTTGCCTGATGTGTAGGAGTAACCTGGACATGTCTCGTCGATGCCTATTCTTGCTTTTCTTGGCTCTGTTCAGGCATTGGTAGAGTTCTTTGTCTTTTACATTGATATTGTCTctgtacaaattacaattttcaaaacaattggGTATCTTATGTGTAAAGTACAATCAAGGGGATAAGGGTGTATTTTAGAGTTAAACTCCACCTGCTGGTAAGGTTATAGCAGTTGTTACACAAACAGGTCAGCTTCAGAAAACATTCTCGGCACTAGCGTGTGTGCGCTAAACAACAGTTTAGGTTTCTCATGGAGGAAATTTgcaaatatttcccttttcacttttttttttgttacttaaAGCAAACCTAAAGCACACTGAAAATATTGAGAATTATCCTCATTAGTCATAATATTCAGTATATTAATTTTCTAAAGTATACttctaatttatttgtttggtacTTCATCTATGTAAAGCTGTATGTAATGTACTGTTTGCAATTCAGATGTGGGTTCCAAAGTCACACTGAAGGCTTTTCAGATTCATCTTAATATCTTAAGGggcataatgtattttttttttttttttatcatgcagCCAATGGATTATTCAGTGCTAATCTGCCATAATAGcattttctattgatttttgTACCAAATGTGAATTGTTCCTTAGACTGACAAATGAGCAAAGACAGAAAtgcctttgaaaaataaacagaacttCATGTATGTCAAAGCTTTCTCTTCTGCTGTagataacatttgtttttgactGGTATACACTGATGTAGAATTTTCTACAAATGGGGGGTTTGTTTAGCATTGAAACTAGTACTGTTGGAGAACCCAATTGGTACAGTTTACATGCTGACAAAAGGGGTACTTTGTAATCAGTTAACCAGTAATGAATGTCATAAAGTTGTTTGGTAAAGACCAAAATAATTTTTCATAAAATGAGGGAAGGTGGGACACATTAGTTGATGGTATGCcctgtttaactttttttctttttaatcttaaatTCTTTGTAATGTTTCACAGGGCAGTGCATTCATGTCTCACTACAGAGTGTAGGATAACCTTGGTATTGCAGCCAGTATTGCCTACGATTCTTGGGAATACAGCTAGTTTCTTATTAAATATGTCCTCTGGGCAAAGAATGTGAATCCAGGGCATCTTGCTAACTGTTTTAAGCCTTAAAACATGCAGTTGCTAGGCGTCAGTGGCCGAGGTGGTATTTTAGGTTTGTTGccactgcatttttatttgtgtatatttaaatttaatggAAACGCGCTGTATAAACTGTCTAGATTATTTCCACTGCACTActtgtgaaagaaaatgaaagcctGTTCATtcaagtaaaaaacaaacattccaCAGAATGAACTGTCAAAATCATACCACactagatgtttttttatgtaaataaagctgAGTGTGTTAACAAAAA

Function

symbol description
wipi2 Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity and phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in several processes, including autophagy of mitochondrion; autophagy of nucleus; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagosome assembly. Predicted to be located in phagophore assembly site. Predicted to be active in cytosol and phagophore assembly site membrane. Predicted to be extrinsic component of membrane. Orthologous to human WIPI2 (WD repeat domain, phosphoinositide interacting 2).

NR:

description
WD repeat domain phosphoinositide-interacting protein 2 isoform X1

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0005829 cytosol cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0034045 phagophore assembly site membrane cellular_component
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
K17908 WIPI1_2, ATG18; autophagy-related protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018535 True 5097 mRNA 0.39 12 13903619 13915955

Neighbor

gene id symbol gene type direction distance location
AMCG00018532 NA coding downstream 46029 13851411 ~ 13857590 (-)
AMCG00018531 smurf1,LOC107720062,LOC107591759,LOC107703417,LOC107581717 coding downstream 71234 13783853 ~ 13832385 (-)
AMCG00018529 NA coding downstream 158515 13743989 ~ 13745104 (-)
AMCG00018525 actb,LOC102799139,LOC103365100,LOC102299797 coding downstream 316549 13583104 ~ 13587070 (-)
AMCG00018524 NA coding downstream 325309 13572366 ~ 13578310 (-)
AMCG00018546 NA coding upstream 105100 14021055 ~ 14036632 (-)
AMCG00018545 NA coding upstream 125686 14041641 ~ 14063120 (-)
AMCG00018548 foxk1,LOC107720067,LOC107703411,LOC107748300 coding upstream 173841 14089796 ~ 14090200 (-)
AMCG00018540 LOC103397138,LOC107554284,LOC100698873 coding upstream 227221 14143176 ~ 14152386 (-)
AMCG00018541 tfip11,LOC102785266 coding upstream 237568 14153523 ~ 14158352 (-)
G117012 arpc1a,LOC102781765 non-coding downstream 13516 13887421 ~ 13890103 (-)
G117011 arpc1a,LOC107388895,LOC107674705,LOC107703414 non-coding downstream 16252 13886309 ~ 13887367 (-)
G116949 NA non-coding downstream 283187 13620223 ~ 13620432 (-)
G116931 NA non-coding downstream 368783 13528696 ~ 13534836 (-)
G116918 NA non-coding downstream 401122 13500718 ~ 13502497 (-)
G117066 NA non-coding upstream 179336 14095291 ~ 14100107 (-)
G117122 NA non-coding upstream 316841 14232796 ~ 14233624 (-)
G117221 NA non-coding upstream 396303 14312258 ~ 14399555 (-)
G117223 NA non-coding upstream 406130 14322085 ~ 14408949 (-)
G117227 NA non-coding upstream 441480 14357435 ~ 14402346 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 175749 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 646369 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 1613075 12287568 ~ 12290544 (-)
G116577 NA other downstream 1992283 11911014 ~ 11911336 (-)
G116428 NA other downstream 2700731 11199578 ~ 11202888 (-)
AMCG00018555 LOC107689851 other upstream 326590 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 587448 14503403 ~ 14520875 (-)
G117377 NA other upstream 820183 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1582707 15498662 ~ 15518315 (-)
G117784 NA other upstream 3092943 17008898 ~ 17009301 (-)

Expression


Co-expression Network