AMCG00018537 (radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693)


Basic Information

Item Value
gene id AMCG00018537
gene name radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13997909 ~ 14022806 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018537
TCTAAGGAATCTCTGCTATCGACTACAATTTCAGCCAATGAGGAAGCAATGACAATCCTGGAAGAAGTCATAATGTACACTTTCCAGCAATGTGTCTATTATATAACAAAGtctttgtatgtttgtttgccCAGCCTGCTGGACTGCAGTTCTTTCCAGGGAGAGAACAGTGACCTCTGCTGGCGAAACTCAGCAGTGCTCCCTGAACCCATGCGCAAAGTGCTCCAGATCTTCCAGACCACCCAGGACCTGCTCCAGCAGTACGAGGTTCACCCGGAGATCCAGTCCCAGATGTTTGCAtatctcttcttcttctctaaTGTCTCCCTCCTCAACCAGCTCTTAGACAAAGGCCCGAGTCGCAGCTGGTTCCAGTGGTCTCGTGGAGTTCAGATTCAGGCCAGACTGGGGATGCTGCTGGACTGGGCAGGGAAGGCTGGACTCGGCCACCTGGCTGAAAAATTCTTCACCAAATTTTCCAGCACTGTGGGGCTCCTGGCCACACCAACACAGCAGCTTGTACAGATGAGTTGGAAGGTTTTGTGTGCCGAATACCCTGCTCTTAAACCTGTGCAACTGCACCGCATTCTGTCTGAGTACCAGCTGGGCCCGGAGACTGGTCCAGTGCCCGCCTGGCAGCCCAGCCCTGAGGAGGAAGTGATCTACAGGACAGTCGACCTTCTGGAGAGTTTTGAAAACCACCCTCCCATCGTCCTGCCCAGCAGTGGCTTTAAGGTGGACCTAGAGTGTGACGCTGTGGATGACAACATCTACAGACAGCTGCTCTACATCCGCCACTATCTGTGGAGCTTGAGGaccaagtccccgtccacgaaTGGCAGTGCAGATTTACAGGAGCTCCAAGTGAAGAAGGACCTGCCAGTGAGTCACAGCAGCCCGCGACCCGCAGCCCCAGACCACAGCTCGTCCCTTGAGCCGAACCAGCCTGTCGCTCCCCTTGAGTCTGAAGTGGACGGGAGGGTCTCTGTTATGTCCAATATCAGCATAGGCTCCAGGGAAATCCACTGCCAGGAGGACAAACTGAAGGAGAAGCTGCAGCAGATTCAAATGCAGAATAGCCTGCGGAGGAACGGCTCCTTCCGGCAGAGCATGCAGCCTCTGGACCCCTCCTGCCTGCTGACACCCCCCAACACCCCCCTGTACCCTGAGCTCAGCCACTCGGACAAGCTGCagaagaacagcagcagcaggccccCCCTTGACCTGAAAAAGGGACTCAATGGCTTCATTGCCAAAGGAATGGAAGGCCACATGAGTGGGGTCTTTGACTTGCCCACCCCAGTCTCCTCCAGTCACAGCTCAGCATCTGATGATTTCTGTTACGTGTTTGTAGTGGAACTGGACAAGGGACCCTATGGACTGGGCATGGGACTGATCGACGGGCTGCACACTCCCTTAGACTCTCCTGGGATCTACATCCGAACCCTAATACCTGATGGACCAGCAGCATCGGATGGCCGTCTCAGTATTGGTGACAGGATCCTGGCTGTGAATGGGACCAGTCTCATAGGAGCAGACTATCAGAGTGCTGTGGACCTCATACGAATGGGAGGCGGGAGACTGCGGTTCCTCGTTGCCAAGTCTGACCTGGAAGTCTCTGAGAAAATCAGTGCGTCTTCATGCTGA
>TU146591
ctcattctatttttattttgttgtatgtatCTTTTATTACCAAATGTACTGGAACAATGAGcagttgtttaatatatatatattagggtgAAGGTCTAATCTTGACCTTAAGTGTGGACAAAGAATCACTGTGTTCTATAGGATTCAGGTCCTAGACTCAAATGTATTCAGCTCAACTCTCCTTGAAACACTGTTACTATACCAGTGTACTAGCACTGACCATACCATTACATCATAGTACACTGTTGTATAAAATATtagaatttgtattgtttatgctATagaacatatgtatataaaatctcCATAGCACATTACTATTACTATAGTAAAACACATGACCAACAGAAGGATCCATTACATTTAgtaatatagattatatatatatatatatataactgaataACTTTagcttcattatttttaaatggtaactcaaaacaataattcttgtttttctttctgtatttagCACACTCCCTTAGACTCTCCTGGGATCTACATCCGAACCCTAATACCTGATGGACCAGCAGCATCGGATGGCCGTCTCAGTATTGGTGACAGGATCCTGGCTGTGAATGGGACCAGTCTCATAGGAGCAGACTATCAGAGTGCTGTGGACCTCATACGAATGGGAGGCGGGAGACTGCGGTTCCTCGTTGCCAAGTCTGACCTGGAAGTCTCTGAGAAAATCAGTGCGTCTTCATGCTGAGAAGTCAGTGCTGTCAGCTGTCTGTTGCTGTTCTTCAGTTTCCCCGGCCTGGTTTCTGCACCTGACAGTAGAGAGCAGGAAAAGGTACCAAAAACAGTAAACTGATCCTAAACAGACGCGAGGCAATGATGATTTAAAGACTCAGACAcctttaaataaagcaatgtattgctatgaaaataaatagagtATTATCCTTTTGGATCCAGGTCTACTGAATTATTGgctgatttatttgaaatttaattgtgttatttcataAGCCAACAGGTGCTGTGCAAAACTCTTACCGTTTATATCAAATTAGAATGTCTTCTGAAGCAGCTCAAGTACTTTTTGTCAGAATTCCTTAATCATAGTTTAAAAATTCAGTAGCACATTTCAGATATATATTCACAGAAACGTATTCCCAAAGCATTTAAACCTgcagatgtatttaaataaattagcttTTTACCAGAAAGTTGTCAGATGTGTTTCAGAAAATACAGGTAATACTAACGGCAATATGTTCAACAAGGCAGTAAAAGGCACTAATAATGAATATCAGTGAACAATGTGATGCGATGTTATGTTATGGAAGCACACTCACACTGGTGTATTATCAACAAATAATACCTGGCCTTTGATTGTTTTCAGATTACTTTACTTTCTGAAACAgctaattgtatttgtatccagcaaaatgtatgtaaaccATGCAATATGTTTCAATATATCTACTGTACAAGTAAATGCTG
>TU146594
CCCACCCCAGTCTCCTCCAGTCACAGCTCAGCATCTGATGATTTCTGTTACGTGTTTGTAGTGGAACTGGACAAGGGACCCTATGGACTGGGCATGGGACTGATCGACGGGCTGCACACTCCCTTAGACTCTCCTGGGATCTACATCCGAACCCTAATACCTGATGGACCAGCAGCATCGGATGGCCGTCTCAGTATTGGTGACAGGATCCTGGCTGTGAATGGGACCAGTCTCATAGGAGCAGACTATCAGAGTGCTGTGGACCTCATACGAATGGGAGGCGGGAGACTGCGGTTCCTCGTTGCCAAGTCTGACCTGGAAGTCTCTGAGAAAATCAGTGCGTCTTCATGCTGAGAAGTCAGTGCTGTCAGCTGTCTGTTGCTGTTCTTCAGTTTCCCCGGCCTGGTTTCTGCACCTGACAGTAGAGAGCAGGAAAAGGTACCAAAAACAGTAAACTGATCCTAAACAGACGCGAGGCAATGATGATTTAAAGACTCAGACAcctttaaataaagcaatgtattgctatgaaaataaatagagtATTATCCTTTTGGATCCAGGTCTACTGAATTATTGgctgatttatttgaaatttaattgtgttatttcataAGCCAACAGGTGCTGTGCAAAACTCTTACCGTTTATATCAAATTAGAATGTCTTCTGAAGCAGCTCAAGTACTTTTTGTCAGAATTCCTTAATCATAGTTTAAAAATTCAGTAGCACATTTCAGATATATATTCACAGAAACGTATTCCCAAAGCATTTAAACCTgcagatgtatttaaataaattagcttTTTACCAGAAAGTTGTCAGATGTGTTTCAGAAAATACAGGTAATACTAACGGCAATATGTTCAACAAGGCAGTAAAAGGCACTAATAATGAATATCAGTGAACAATGTGATGCGATGTTATGTTATGGAAGCACACTCACACTGGTGTATTATCAACAAATAATACCTGGCCTTTGATTGTTTTCAGATTACTTTACTTTCTGAAACAgctaattgtatttgtatccagcaaaatgtatgtaaaccATGCAATATGTTTCAATATATCTACTGTACAAGTAAATGCTG

Function

symbol description
radil Predicted to enable GTPase binding activity. Acts upstream of or within neural crest cell migration. Predicted to be active in microtubule. Orthologous to human RADIL (Rap associating with DIL domain).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018537 True 1647 mRNA 0.54 9 13997909 14022066
TU146591 False 1452 lncRNA 0.35 2 14020643 14022806
TU146594 False 1094 TUCP 0.41 3 14019928 14022806

Neighbor

gene id symbol gene type direction distance location
AMCG00018536 NA coding upstream 12308 13972550 ~ 13985601 (+)
AMCG00018533 mmd2,LOC107725363,LOC103909971 coding upstream 36921 13941628 ~ 13960988 (+)
AMCG00018534 arpc1a,LOC107720063,LOC107674705,LOC107591778 coding upstream 95248 13885780 ~ 13902661 (+)
AMCG00018530 LOC108430595 coding upstream 119844 13859895 ~ 13878065 (+)
AMCG00018527 NA coding upstream 212360 13782714 ~ 13785549 (+)
AMCG00018547 NA coding downstream 88898 14111704 ~ 14111910 (+)
AMCG00018539 NA coding downstream 136857 14159663 ~ 14161738 (+)
AMCG00018549 NA coding downstream 169332 14192138 ~ 14200344 (+)
AMCG00018552 LOC108412053,LOC101077666 coding downstream 208184 14230990 ~ 14232314 (+)
AMCG00018550 NA coding downstream 209916 14232722 ~ 14237949 (+)
G116976 NA non-coding upstream 150817 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 157938 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 306542 13666023 ~ 13691367 (+)
G116882 NA non-coding upstream 630881 13366640 ~ 13367028 (+)
G116790 NA non-coding upstream 782557 13129738 ~ 13215352 (+)
G117130 NA non-coding downstream 220058 14242864 ~ 14244203 (+)
G117131 NA non-coding downstream 221902 14244708 ~ 14245318 (+)
G117197 NA non-coding downstream 415186 14437992 ~ 14439091 (+)
G117209 NA non-coding downstream 511157 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 713290 14736096 ~ 14738327 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other upstream 651032 13307898 ~ 13346877 (+)
G116832 NA other upstream 742115 13253343 ~ 13255794 (+)
AMCG00018498 NA other upstream 1386030 12543545 ~ 12611879 (+)
AMCG00018491 slc5a10 other upstream 1477578 12503023 ~ 12520331 (+)
AMCG00018493 prpsap2,LOC107737786,LOC107581734,LOC107720040,LOC107654541 other upstream 1497855 12489467 ~ 12500054 (+)
G117033 NA other downstream 23453 14046259 ~ 14049153 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other downstream 118571 14141377 ~ 14145995 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other downstream 166197 14189003 ~ 14191077 (+)
AMCG00018551 NA other downstream 216436 14239242 ~ 14242717 (+)
AMCG00018564 mlec,LOC106579938 other downstream 308035 14330841 ~ 14399539 (+)

Expression


Co-expression Network