AMCG00018538 (LOC103397138,LOC107554284,LOC100698873)


Basic Information

Item Value
gene id AMCG00018538
gene name LOC103397138,LOC107554284,LOC100698873
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14141377 ~ 14145995 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018538
GTACTCGGCGTTGCTCAGCCACCGCCGGACACCGCAATTATAGAGTGGAGGCGACGGATCAGACAACGGGAAGAGTAGCAGCAACACCGAGTGAGTACCGCGCCTTTACTGGTGTGCCTGGGCGGGGGGTTGCTCTCCGGAGTTTGATCTATGTGGAGGAGagaaataaatgtgcatttaaGAGTGAGGAAAGTTAGGTAGAAATAAACAGCAGCCCGGCTGATGCGCGTAAACATGGGTTCGTCACATGCGATTTAGCAACATCACTGCAACTATCGATCAGCTGAGTTCGTGTTTTTCAATGGACAAATGCGTGCATCTGTCCCCAGTGAAGAACGGGCTGACTGCAGTGGGGGCACCATGTCTGACAGGAAAGCCGTCATCAAAAACGCAGACATGTCTGAGGATATGCAGCAGGACGCTGTGGAGTGTGCCACCCAGGCTCTTGAGAAGTACAACATTGAGAAGGACATAGCAGCATACATCAAGAAGgagtttgacaaaaaatacaacCCTACCTGGCACTGCATTGTGGGCAGGAACTTTGGCAGCTATGTCACCCATGAGACCAAGCACTTCATCTACTTCTACCTGGGGCAGGTGGCCATTCTTCTGTTCAAGTCAGGATAAAGACACTAACCCAGTGGCCCGCAGTACAGTCCAAAACATCCCTGTTCCAGGCACCAGCAGACGGACTGCTCTGCGGAGCTCCAGCTCTGTGACGGCTCATTGGCATTCACAGTGCAGGGACCTCCACATTTCTGTGCTGCttcacttttttcccttactggTAGAAATGTCCATGCATCAAAtactagtatttatttttattcattttctataCAGCAAAGAAACCGTGCTCCTCAAATAAAAGTCTTTTTTAGAAAACATCTGGTGCCTCTGTGTGAGTATGTAATGCAGATTCAGGGTAACGTAGGTGTGTGGCTCTGAGCACTACTGTCAGTTTATCCTTCTCCTTAAAATACCTTTAAACGCCTTATattgaataacaaaaatacatttacctgAATAGGTGGGTCTTTCTCAAATGGCCATTGGATACCATGTAGCTTTGGCTAAATTGGTTAAAGTAGTTTTGTtcacaagttaaattaatacaggggagtgtttttctttctttttaaaacacaagtgTTTGATAAATTAACAGTAATGACAAAACCTAACTGGATTATAACagtgatttcagaataaaaggTGTACATATTGGCACAATATAATAAACTAGAAACATTACAGATGGAAAGGATATGGGCtcttttagatgtttttttttttttttcaac
>TU146633
GATATTTCACAGTCAAGAGCAGCAGGTCCCACTCAACCTCGTTTAAAGATTTTTCCAAAAAACATCCATGCCAATAGGGAGCTTACTTGGGTGGGACCCTGCAGCAGAAGTACTCGGCGTTGCTCAGCCACCGCCGGACACCGCAATTATAGAGTGGAGGCGACGGATCAGACAACGGGAAGAGTAGCAGCAACACCGAGGCACCATGTCTGACAGGAAAGCCGTCATCAAAAACGCAGACATGTCTGAGGATATGCAGCAGGACGCTGTGGAGTGTGCCACCCAGGCTCTTGAGAAGTACAACATTGAGAAGGACATAGCAGCATACATCAAGAAGgagtttgacaaaaaatacaacCCTACCTGGCACTGCATTGTGGGCAGGAACTTTGGCAGCTATGTCACCCATGAGACCAAGCACTTCATCTACTTCTACCTGGGGCAGGTGGCCATTCTTCTGTTCAAGTCAGGATAAAGACACTAACCCAGTGGCCCGCAGTACAGTCCAAAACATCCCTGTTCCAGGCACCAGCAGACGGACTGCTCTGCGGAGCTCCAGCTCTGTGACGGCTCATTGGCATTCACAGTGCAGGGACCTCCACATTTCTGTGCTGCttcacttttttcccttactggTAGAAATGTCCATGCATCAAAtactagtatttatttttattcattttctataCAGCAAAGAAACCGTGCTCCTCAAATAAAAGTCTTTTTTAGAAAACA

Function

NR:

description
PREDICTED: dynein light chain 2, cytoplasmic-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component

KEGG:

id description
K10418 DYNLL; dynein light chain LC8-type

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018538 True 1307 mRNA 0.44 3 14143168 14145995
TU146633 False 735 TUCP 0.48 4 14141377 14145578

Neighbor

gene id symbol gene type direction distance location
AMCG00018547 NA coding upstream 29467 14111704 ~ 14111910 (+)
AMCG00018536 NA coding upstream 155776 13972550 ~ 13985601 (+)
AMCG00018533 mmd2,LOC107725363,LOC103909971 coding upstream 180389 13941628 ~ 13960988 (+)
AMCG00018534 arpc1a,LOC107720063,LOC107674705,LOC107591778 coding upstream 238716 13885780 ~ 13902661 (+)
AMCG00018530 LOC108430595 coding upstream 263312 13859895 ~ 13878065 (+)
AMCG00018539 NA coding downstream 13668 14159663 ~ 14161738 (+)
AMCG00018549 NA coding downstream 46143 14192138 ~ 14200344 (+)
AMCG00018552 LOC108412053,LOC101077666 coding downstream 84995 14230990 ~ 14232314 (+)
AMCG00018550 NA coding downstream 86727 14232722 ~ 14237949 (+)
AMCG00018558 NA coding downstream 215041 14361036 ~ 14367961 (+)
G116976 NA non-coding upstream 294285 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 301406 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 450010 13666023 ~ 13691367 (+)
G116882 NA non-coding upstream 774349 13366640 ~ 13367028 (+)
G116790 NA non-coding upstream 926025 13129738 ~ 13215352 (+)
G117130 NA non-coding downstream 96869 14242864 ~ 14244203 (+)
G117131 NA non-coding downstream 98713 14244708 ~ 14245318 (+)
G117197 NA non-coding downstream 291997 14437992 ~ 14439091 (+)
G117209 NA non-coding downstream 387968 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 590101 14736096 ~ 14738327 (+)
G117033 NA other upstream 92224 14046259 ~ 14049153 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other upstream 118571 13997909 ~ 14022806 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other upstream 794500 13307898 ~ 13346877 (+)
G116832 NA other upstream 885583 13253343 ~ 13255794 (+)
AMCG00018498 NA other upstream 1529498 12543545 ~ 12611879 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other downstream 43008 14189003 ~ 14191077 (+)
AMCG00018551 NA other downstream 93247 14239242 ~ 14242717 (+)
AMCG00018564 mlec,LOC106579938 other downstream 184846 14330841 ~ 14399539 (+)
G117178 NA other downstream 199095 14345090 ~ 14347741 (+)
AMCG00018567 NA other downstream 262963 14408958 ~ 14412279 (+)

Expression


Co-expression Network