AMCG00018543


Basic Information

Item Value
gene id AMCG00018543
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14174101 ~ 14178312 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018543
ATGGCCAGTCTGTTGTCCCTGCTTGgttTGCCATGGCAGGAGTTGCACAGTGGGTGCAGTGAGGGTggaggggtcaggggtcaggtcTCCGTCTCTGTGAGCCCAATGCGCCTCTCCCTGCGCCGCATCGTCGTGGTGACGGGTGGTATGGTGGCCACCCTGCTGTTCTTGCTCGTGTGCCAGCGTTCcctgagttgccgtgatgacgAGAGTGAGGACAGGGACGATGGGGTGGCCGTGTTGGTCCGTGACCGACGGAATGTGGAGTTCAGCTACAACCGGCAGGCAGCACTGGTTTTCGTGGGCGGTGTCCCCCGTAGTGGCACCACGCTAATGCGGGCGATGCTGGATGCCCACGCACACGTGCGCTGTGGACAGGAGACGCGCGTCATCCCTCGGCTGCTGGCGCTGCggcagggctggggggggcgGAAGGAGCGAGTACGGCTGCAACAGGCTGGCGTGACGGAGCGTGTGCTGGACGACGCTGTCGCTGCCTTCCTGCTGCAGGTGATGGCGCGGCACGGCGAGCCTGCCCCCACGCTCTGCAACAAGGACCCCTTCACCCTGAAGAGTGCTCTCTACCTGTCACACCTCTTCCCCCAatCGAAGTTCTTGCTGATGATCCGTGATGGCCGGGCTGCTGTCCACTCTATGATCTCTCGGAAAGTGACGATCGCTGGGTTTGACCTGGGCAGCTACCGGGACTGCCTGGGCAAGTGGAGCCGTGCTGTGGAGGTCATGGTGACGCAGTGCGAACGTGTGGGGGAGGCGCGCTGCCTGGCCGTGCGCTACGAGGCACTGGTGCTGCGTCCACGAGACACGCTGAGTACTGTGCTGCGCTTCCTGCAGCTGCCTTGGGACGAGGCTGTGCTGCACCATGAAGACGCCATCGGCCAGCCAGGGGGCGTGGCCCTGTCCAGGCAAGACACGCCAACACGGACGCAGCAAGATCATCTCTCATTCCCCTGCCCCACCCCCACTTTCTCTCTGAGTGTGATCGAGCGCTCCACTGACCAGGTAATGCAGCCGGTGAATCTGGGGGCTCTGTCGCGGTGGGTGGGGCAGATCCCGCTAGACGTGCTGGCGGAATTAGAAACCATCGCCCCCATGCTGAACCGTCTGGGCTACGACCCCCACGCCAACCCCCCCTACTATGGGGAGGCGGAGCCCATCGTCCTCAACAACACAGAGAGGGTGTTGAGAGGTGATTTTAAAACTCCAGCCACGTTAAAGCAAGAGCCTCTGGTGAGAGAGTACCTGCTGTCTGATAGTGTTGgcGTCTCTGAATGTGTCGGACTCAGAgagctgagagacagacaggataCTGCGATGGACAGGCTGATGGACACAGACTGCTCAGCTTGGGGCATTCCTGCTGTCACAGAGTGCTGGGGGACTGACTGCAGATGA

Function

GO: NA

KEGG:

id description
K01021 TPST; protein-tyrosine sulfotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018543 True 1413 mRNA 0.62 7 14174101 14178312

Neighbor

gene id symbol gene type direction distance location
AMCG00018542 NA coding downstream 1210 14161989 ~ 14172891 (-)
AMCG00018541 tfip11,LOC102785266 coding downstream 15749 14153523 ~ 14158352 (-)
AMCG00018540 LOC103397138,LOC107554284,LOC100698873 coding downstream 21715 14143176 ~ 14152386 (-)
AMCG00018548 foxk1,LOC107720067,LOC107703411,LOC107748300 coding downstream 83901 14089796 ~ 14090200 (-)
AMCG00018545 NA coding downstream 110981 14041641 ~ 14063120 (-)
AMCG00018544 LOC107658624 coding upstream 4181 14182493 ~ 14184291 (-)
AMCG00018557 NA coding upstream 22784 14201096 ~ 14202287 (-)
AMCG00018556 NA coding upstream 27009 14205321 ~ 14206123 (-)
AMCG00018554 msi1,LOC100704609 coding upstream 30124 14208436 ~ 14223317 (-)
AMCG00018560 NA coding upstream 87783 14266095 ~ 14288995 (-)
G117066 NA non-coding downstream 73994 14095291 ~ 14100107 (-)
G117015 arpc1b non-coding downstream 207832 13897500 ~ 13966269 (-)
G117012 arpc1a,LOC102781765 non-coding downstream 283998 13887421 ~ 13890103 (-)
G117011 arpc1a,LOC107388895,LOC107674705,LOC107703414 non-coding downstream 286734 13886309 ~ 13887367 (-)
G116949 NA non-coding downstream 553669 13620223 ~ 13620432 (-)
G117122 NA non-coding upstream 54484 14232796 ~ 14233624 (-)
G117221 NA non-coding upstream 133946 14312258 ~ 14399555 (-)
G117223 NA non-coding upstream 143773 14322085 ~ 14408949 (-)
G117227 NA non-coding upstream 179123 14357435 ~ 14402346 (-)
G117234 NA non-coding upstream 188153 14366465 ~ 14367911 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 446231 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 916851 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 1883557 12287568 ~ 12290544 (-)
G116577 NA other downstream 2262765 11911014 ~ 11911336 (-)
G116428 NA other downstream 2971213 11199578 ~ 11202888 (-)
AMCG00018555 LOC107689851 other upstream 64233 14242545 ~ 14263154 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 325091 14503403 ~ 14520875 (-)
G117377 NA other upstream 557826 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1320350 15498662 ~ 15518315 (-)
G117784 NA other upstream 2830586 17008898 ~ 17009301 (-)

Expression


Co-expression Network