AMCG00018549


Basic Information

Item Value
gene id AMCG00018549
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14192138 ~ 14200344 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018549
GAAAAATTGTATATCAATAAGAAATGCCTTACatggagttgtttttcttaaagtgtATGTGTGCTACAAGGTCTGCAGCTAAAGAGGAACTAAAAGATCGCATATgccaacaaaatgtatatatatGTGACAGTCTGCCTAAACTGTCTATACCCCAGCAACACAGGTGGAGCAGACCCTCTGGACATCTAAAACTGCCATCCTTGCCTCTTCAGGAGTGAACAGAAGTGTATGTAAACTTCTCTGATCAACGCACTCTACCTCTCCAGTCTGAGTTATTGAAGGGAAACTCCCGGCTGGGCTATTGCTGCCATTTCTTCATGATGGACACAGAGATCAACTATGACCAGTTACAAAACTCAGAACTAAGGAGTCGTCACTATGACAACAGCTACTTCTTCCACACAGGCCGGCGCTGGGGCTATGTGCTGTACAGTGGTCTCCtcgccctgctgctgctgctgctactgatCACTGGACTCAAGTttTCTCAGGTGCAGCAGGAGGTCTCAGACcATTTCTTTGCCAGCTGGCTGGAGAAGCTGCCCAGACAGTCCTTCTGGATCGGGCTGACGGACAAGAACAAGGAATCTGAGTGGGAGTGGGTGGATGGCACAGCCTACAACGACACCCCACATTTCTGGGACGTGGGGCAGCCCGATGACTGGGAGCATGTGGGGTTGGCGGGCGAGGACTGCGTGCAGTTCCACAGCTTCTCATTAGAAACTGCCGACTGGAACGATGGGCCCTGCACGACACGGTCCCGCTACGCCTGCGAGAAGCAGTTGCATTAGAGCAGAGCGCCCCTTGCTACCTGGGAGCTGCACTGCCATGCACAGCTCCCCCCGCCTCACTGCcaacacaacaccaccacaacCCTgtcacaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagatcataatacacatatacagaaTCTCCAATAAGGCCTCAGTTAAAGTCAGACCTTCCACTTCCCTGTAACCACCACACTGACCCTTTTATAGTTGAGGATGTGTCTAACTCCTCCGCAGCTAAACCATTAGAGAAAGAGACCAGATAGATAGTGTTGCACAGTTAttcatataaaacagaaaacagcacagtacagttttattattgcatatgagtatataaataaataaaaacatatttatgtaaatacataacCTAGAGAAGCACATATAGAAAATACCAAGACAGGTTTAACACCTCCCTCCACAAGAATGTGCTCTTCCCAACATGTATATGCACTGGCATCCCTGCCAATATAGAGTACAGGAGACTTGTGAAGCTGTATGTATCGGGAGTCTCCTGTCGAAGTAACTTTACATATGTTATAAAACGTGaggctttgttttaaatgaacaaacaataacatttatcCATTAAACCTTTGTTCTGTCTTTATATGAAACTTGCACCAATGAAGGTGTGCACCCCATACATCCTGCTCGTATTTACATAAAAGTAATAACAATGgtttctgtaataaaacaa

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018549 True 1539 mRNA 0.45 7 14192138 14200344

Neighbor

gene id symbol gene type direction distance location
AMCG00018539 NA coding upstream 30400 14159663 ~ 14161738 (+)
AMCG00018547 NA coding upstream 80228 14111704 ~ 14111910 (+)
AMCG00018536 NA coding upstream 206537 13972550 ~ 13985601 (+)
AMCG00018533 mmd2,LOC107725363,LOC103909971 coding upstream 231150 13941628 ~ 13960988 (+)
AMCG00018534 arpc1a,LOC107720063,LOC107674705,LOC107591778 coding upstream 289477 13885780 ~ 13902661 (+)
AMCG00018552 LOC108412053,LOC101077666 coding downstream 30646 14230990 ~ 14232314 (+)
AMCG00018550 NA coding downstream 32378 14232722 ~ 14237949 (+)
AMCG00018558 NA coding downstream 160692 14361036 ~ 14367961 (+)
AMCG00018568 NA coding downstream 188682 14389026 ~ 14389346 (+)
AMCG00018570 NA coding downstream 191965 14392309 ~ 14393844 (+)
G116976 NA non-coding upstream 345046 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 352167 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 500771 13666023 ~ 13691367 (+)
G116882 NA non-coding upstream 825110 13366640 ~ 13367028 (+)
G116790 NA non-coding upstream 976786 13129738 ~ 13215352 (+)
G117130 NA non-coding downstream 42520 14242864 ~ 14244203 (+)
G117131 NA non-coding downstream 44364 14244708 ~ 14245318 (+)
G117197 NA non-coding downstream 237648 14437992 ~ 14439091 (+)
G117209 NA non-coding downstream 333619 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 535752 14736096 ~ 14738327 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 1061 14189003 ~ 14191077 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other upstream 46143 14141377 ~ 14145995 (+)
G117033 NA other upstream 142985 14046259 ~ 14049153 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other upstream 169332 13997909 ~ 14022806 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other upstream 845261 13307898 ~ 13346877 (+)
AMCG00018551 NA other downstream 38898 14239242 ~ 14242717 (+)
AMCG00018564 mlec,LOC106579938 other downstream 130497 14330841 ~ 14399539 (+)
G117178 NA other downstream 144746 14345090 ~ 14347741 (+)
AMCG00018567 NA other downstream 208614 14408958 ~ 14412279 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 573771 14774115 ~ 14777110 (+)

Expression


Co-expression Network