AMCG00018550


Basic Information

Item Value
gene id AMCG00018550
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14232722 ~ 14237949 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018550
GTCGCCCTGGTGCGGTGTGTCCCTAAAGGCGAGCCGTAGCTCAAGGCAGCCCTCACATGACATGGCTTGTGATCTGCATTACTCCGTGAGACTGCACAGACGTAAATGAAAGCATGAAAGAAATGGCAAGAGAGTGAAGTAGAGAGGCGGAGAAGCAGAGGTACACTGTGTGCATCCCAGAGCCAGCAGAGAGCAGCCGGGGGAGACCGCGCCGGCACAGCCACCCGACCGTCGCGAACTCATACAGGAAGTGCGCGTCAACTATCACAAAACTGGACGGAGCTGCGCTGCGGGATTACTCTGCGCTTAATACACCGGACACTATTGTGCATGGGACCGAAATACACAACAGTATAACCGTGCAATACAGTGCACTAAACAATACACCtgctgtgctgtgtggtcCTGAGCTCTGGAGGCCGTGGACATACGAGACGAAACAGTCAACAAAGGAGCCGGTGACCCCGGAGGGATGGAGGACcggaggcacagagagagagaggagagcgcactgtgagacacagagagaagcaGGAGGACAGAGAAGACAATGGGGGACACAGCTGCTACTGCAGAGCCCAGATGGTGCAGTGTGTTCTTCCTGTATGACGGGTCAAAGGTGAAGGAGGAAGGTGACCCCACCCGTGCAGGAATCTGCTACTTCTATCCTGTGGAGACGGTGCTGGACCAGCAGGAGGTGCTCTGTGGGCATCTGGCAGGGGTGTGTCGCTGCCTGGCCGAATTGTCCACCGCCCCCCCCCGACTGCTCCGTATGCGCAGACGCAAATTTGCCATCCGGCTGCGTGGAGACTTCCTGTGGGGCGGCAGCAGTGAGCTGCAGCAGATCTATGGCTCTCTGCACACCATAGACACCACGCGGATTGATCCTCTGTTGTTGCTGAAGGCGGCTCTGATCCTGCAGGCGTGTCAGCGCTGCCCCCTGGTGCTTGCCGGCTGCATCCTGTATAGGGGAAGgGTTGTCAGCACACAGATGCCTCCTGGTCTGACGGCAAAGGTGCTGGTCCGCGACTCTGACCCCCAGAGCCAGGACCAGGTGACTCTCGTTAATGGCGAGCCCACCGCCCCCCCTGCTCCCACCTCTCGCAGTGTCTCCATGGCGACAGTGTTCCTGACTTCTGAGGAGCTGAGCTCTCTACAGCGTCTCCCTGTGGACTGGGCCTGCAGgtcccACCCCACTCCTCAGCAGGCCAGCCGAAACAGGAAGTCCCGCCTCCTGTCACGTACTCTATCAGATACCCTTGACCCCGAGCTCAGCCCCCCCACCTGCTTATctgaccccaccccctccccttgCAGTGTCCACACCCCCAGCCCGGACCCCTCCCTCCCTAATGAGGTTGATGCCCTCACCCCTGACTCCTCCACATTGCGAACTCCCATTGGCCAGCTCCCTCTGCCCAGCGCCACACCTTTCTGCATAGGCCACACCCCTCCACCCAGTACACATGAGTCATGTGACCCAGCCATGCTCAACAGTCCAATGTTGCCCCCCGAAGGCTGTGGTGAGGGCAGTGCAATCAGAGAGGGGGGGCTGGGGTGGGATCAGGAAGGGGacacagagggggagagaagagaAGGCAGTTTTGTCATTCTGCAGGACAGGAGGGGGCAGAGGGGGGGCAGTAGTGGCAGTCAAGAGAGTACTGAGAGGGGCAGCGGCAGGGAAGGGGGGTGCATTAATGCTAGTCCTGAGGGCAGTAACAGGGACAGTAGGTGTACAGTAGGGGGCAGTGAGGCCAGGGGGGCCGAGGAGGAGGAGTGCCCCCTGCTGGCATTGCAGCTCTACATGcacagggtgggggggctggtACTCGCCCTGCTGGTGGAGCCACAGTTCAACAGTGACACAGATGCCCCCCAGGATGTGGAGCGTGTGCTGGTGCGTGCAGCTATGTTGCTCCATTCCCACTTCACCTCTAACCCTGCCCTGCGGGAGGCCATTGTCAGGAGCGGGAGCATGGCGGTGTTCGGGGTGCGCAGTGCGGCACAGGAGACCTTGTTCCAGCAGCAGGGGGCGACAGTGAGGAACTCAGCCTGTTCTCACCTCCTGTCACTCCAGCCTCAGTGCTACACAGCACAGGACTGA

Function

GO: NA

KEGG:

id description
K20194 HPS4; Hermansky-Pudlak syndrome 4 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018550 True 2107 mRNA 0.60 13 14232722 14237949

Neighbor

gene id symbol gene type direction distance location
AMCG00018552 LOC108412053,LOC101077666 coding upstream 408 14230990 ~ 14232314 (+)
AMCG00018549 NA coding upstream 32378 14192138 ~ 14200344 (+)
AMCG00018539 NA coding upstream 70984 14159663 ~ 14161738 (+)
AMCG00018547 NA coding upstream 120812 14111704 ~ 14111910 (+)
AMCG00018536 NA coding upstream 247121 13972550 ~ 13985601 (+)
AMCG00018558 NA coding downstream 123087 14361036 ~ 14367961 (+)
AMCG00018568 NA coding downstream 151077 14389026 ~ 14389346 (+)
AMCG00018570 NA coding downstream 154360 14392309 ~ 14393844 (+)
AMCG00018569 unc119.1,unc119b,LOC107712459,LOC107753165,LOC107550938,LOC107687994 coding downstream 166457 14404406 ~ 14406978 (+)
AMCG00018565 sppl3 coding downstream 182326 14420275 ~ 14431626 (+)
G116976 NA non-coding upstream 385630 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 392751 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 541355 13666023 ~ 13691367 (+)
G116882 NA non-coding upstream 865694 13366640 ~ 13367028 (+)
G116790 NA non-coding upstream 1017370 13129738 ~ 13215352 (+)
G117130 NA non-coding downstream 4915 14242864 ~ 14244203 (+)
G117131 NA non-coding downstream 6759 14244708 ~ 14245318 (+)
G117197 NA non-coding downstream 200043 14437992 ~ 14439091 (+)
G117209 NA non-coding downstream 296014 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 498147 14736096 ~ 14738327 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 41645 14189003 ~ 14191077 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other upstream 86727 14141377 ~ 14145995 (+)
G117033 NA other upstream 183569 14046259 ~ 14049153 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other upstream 209916 13997909 ~ 14022806 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other upstream 885845 13307898 ~ 13346877 (+)
AMCG00018551 NA other downstream 1293 14239242 ~ 14242717 (+)
AMCG00018564 mlec,LOC106579938 other downstream 92892 14330841 ~ 14399539 (+)
G117178 NA other downstream 107141 14345090 ~ 14347741 (+)
AMCG00018567 NA other downstream 171009 14408958 ~ 14412279 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 536166 14774115 ~ 14777110 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location