AMCG00018552 (LOC108412053,LOC101077666)


Basic Information

Item Value
gene id AMCG00018552
gene name LOC108412053,LOC101077666
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14230990 ~ 14232314 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018552
ATGGCCGCGCTAGGACGTTTCTCGCAGTCCCTGCTGAAGTCTGTGGGCGCCCCGGCCCGCCAGCTCTCTGCCGCGGCTCACGGTCAGACCCACGATGCAAGTAAGACACCGTTAGCGACCTGTGGAGTGGGGGCATCGCCGGGGGAGCGCGCATGCAGGCCGGGAAAGAGAAGCACTGAGAGGCTGGTGACCTTGTGTGGCCCTGAGAGAGGCGCCCCGGATCTGTGTGTGTCCGACTCTGTGCGCACAGCTGCGGGGTGTTGGCTGTCTCGGTCAGTCGGGACAGCGGCCCTGGTGGcaCGCATGTGGAAGATCCTGTCATTTGTGGTGGCCCTGCCTGGCGTTGGCGTCTGCATGCTGAACACCTTCCTGAAGATGCAGCACCACTCCCAAGACCAGCCCGAGTTCGTCCCCTATCCACACCTTCGCATCCGCAGCAAGCCCTTCCCTTGGGGAGATGGGAACCACTCTCTCTTCCACAACTCCCACGTGAATGCCCTGCCCACGGGCTACGAGGACAGCAGCCACCACTGAGCCCCCGAGTTGTCCGGCAGCCACACTGGGACCAGAACCCAACCCACATAGGACCTGGAATGGACCACCTTTACTTGCAGTTTACTCCACATTTACTCAGTTTACCTCTGTGCTCTGCCGGCACTTTACCTGTCTGTACTGTATGCTATGACAAGCTCACTTGTTGTGGACCACCTGTCTGTAATATAATGCTGGTTTACGGCAGAAATAAAGACTTTAACCAAAAGCaca

Function

NR:

description
PREDICTED: cytochrome c oxidase subunit 6A, mitochondrial-like

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02266 COX6A; cytochrome c oxidase subunit 6a

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018552 True 765 mRNA 0.59 3 14230990 14232314

Neighbor

gene id symbol gene type direction distance location
AMCG00018549 NA coding upstream 30646 14192138 ~ 14200344 (+)
AMCG00018539 NA coding upstream 69252 14159663 ~ 14161738 (+)
AMCG00018547 NA coding upstream 119080 14111704 ~ 14111910 (+)
AMCG00018536 NA coding upstream 245389 13972550 ~ 13985601 (+)
AMCG00018533 mmd2,LOC107725363,LOC103909971 coding upstream 270002 13941628 ~ 13960988 (+)
AMCG00018550 NA coding downstream 408 14232722 ~ 14237949 (+)
AMCG00018558 NA coding downstream 128722 14361036 ~ 14367961 (+)
AMCG00018568 NA coding downstream 156712 14389026 ~ 14389346 (+)
AMCG00018570 NA coding downstream 159995 14392309 ~ 14393844 (+)
AMCG00018569 unc119.1,unc119b,LOC107712459,LOC107753165,LOC107550938,LOC107687994 coding downstream 172092 14404406 ~ 14406978 (+)
G116976 NA non-coding upstream 383898 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 391019 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 539623 13666023 ~ 13691367 (+)
G116882 NA non-coding upstream 863962 13366640 ~ 13367028 (+)
G116790 NA non-coding upstream 1015638 13129738 ~ 13215352 (+)
G117130 NA non-coding downstream 10550 14242864 ~ 14244203 (+)
G117131 NA non-coding downstream 12394 14244708 ~ 14245318 (+)
G117197 NA non-coding downstream 205678 14437992 ~ 14439091 (+)
G117209 NA non-coding downstream 301649 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 503782 14736096 ~ 14738327 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 39913 14189003 ~ 14191077 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other upstream 84995 14141377 ~ 14145995 (+)
G117033 NA other upstream 181837 14046259 ~ 14049153 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other upstream 208184 13997909 ~ 14022806 (+)
AMCG00018520 slc29a4,LOC107703421,LOC107737679,LOC107581724 other upstream 884113 13307898 ~ 13346877 (+)
AMCG00018551 NA other downstream 6928 14239242 ~ 14242717 (+)
AMCG00018564 mlec,LOC106579938 other downstream 98527 14330841 ~ 14399539 (+)
G117178 NA other downstream 112776 14345090 ~ 14347741 (+)
AMCG00018567 NA other downstream 176644 14408958 ~ 14412279 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 541801 14774115 ~ 14777110 (+)

Expression


Co-expression Network