AMCG00018555 (LOC107689851)


Basic Information

Item Value
gene id AMCG00018555
gene name LOC107689851
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14242545 ~ 14263154 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018555
gaaagagagagagagggagagtcgCACTCTGCTGCAGTGAAGCTCAGTCGAGGCGAGCGATGACAGACGTGAGGCGGACAGCGCTCTGAACAGGCAGCGACTCACCGCAGCGCCTCCGCCGGGTACCGCTGCGCCGGAGCGGCCAAAGATCGCAGCCCGTCCCGCTACCCCCACCGTGAACTCCCCGTGTGCGGTTCGGCTTGGATTACAACTGGACTGCACCGCATTCAAGCCTGACCCCCAGCTTGCctgaactggactggactaaACTACATTACTCTACACTGCAGGACACTACACTTAACTGCACTGAACCGGACCGGACCTCAATAAGTCAATGGTGGCGCTTGTAAGCTTGGCCCACTGCGGGGCGCTGAGAGCCCTCTTCGGGTTTGGGATGCTGTGGGGACTCGGGCTGGCCCAAGGCGAGAGGACAGCCCGGGGCGCACGGACGGAGGACGGGAGGGAGGGGGAACTGAAAGCTGCTGAGTCCGGCTTCGAGGCACTGCATCCCCGCAGGCACGTCGGGAGAACCTGGGGAGAGAACAAACGGCGCTGCGGGAGAGAGGGTGATGTCTCCGagccccctcccctctcctcgcATCCCTCTCCCCCTGGGGAAGGGGTCCTGGGCCGGGCGGGGGTGCCAGGGGGGTTGCTGCAGTCAGTGCTGGCGGAGAGAGACTTTCTGCTGGCCCAGGGGGGGGCAGTGCTGCCCAGCGCACTGCCTGACAACCTCACCCCTCGACGTATCCTGGCAGAAGCGGGGCGACGGGGGGGGGGCCTGTCCGCTGCCCGCAAGAGGCTGCGACCCCCCCATGAACCGCCCTCACCCTCCCCCTCGCCCCACTCGCCCTCCCCGGGAGAGGATGAGGGCGGGGCCTGGCTTGTCCTAGCCAATGAGACACTTCTGGTGGAGGGTCAAGTGATCCGCAGCCCTACCAATACCATCTCTGTGTTCTTCCGCACCTTCCCAGAGGGGTGGGTGGGCACCTTCCAGCTGCACTACCAGATTTTCAGGCTGAGCTGTGCCTTGCCGCGGCGCCCTCACCACGGGGACGTGTCTGTGTTGGACCTGCATGCGGGCGGCACTGCCCAGTTTCGCTGTCACCTGGGATACCACTTGCAGGGGGCATCAGCCCTCACCTGCCTCAACGCCTCACGCCCCCACTGGAGCCAGCATGAGCCCAGCTGCCGTGCGTTCGAGCGAGGTCACTGCTACGAACCCTACCTGCAGAACGGGAACTTCTCGACCTCTGACCCCAGCTACGGTGTGGGCGCGGTAGTGCAGTTCAGTTGTGCGCCTGGTCACTCCCTGGAGCAGGGCCCCCCCGTAATCGAGTGCGTCAACGACCGAGACCCCTATTGGAATGACACCGAGCCACTATGCAAGGCACTGTGTGGGGGGGACCTGTCGGGGCCGGGGGGAGTGATCCTGTCCCCGAACTGGCCGGACCCATACGGGGAGGGGGAGGACTGCAGCTGGCGCATCCACGTGGCTGAGGACAAGCGCATCCTACTGGACGTGCAGCTGCTCAACCTCAGCGACAGTGACATGGTGACGGTGCTGGATGGGGACGAGGGCACCACGCGGGTGCTGGGGCAGTACGTGGGTGGGGCCATCCCCTTCAAACTGGCCTCCTCCAGCCCTGACCTCACCGTACACTTCCACTCCCAGCCACCGGGACTGCTACTGGGCAGGGGAGAGGGCTTTGTCATCAACTACATGGGTGAGGGAGAGACTGGGAGGGAGTGttgtgctAATGGCTGGAAGACGACGTCCCACGCGGCGCTGGTCCGAGGGGCCCGCATCACCTACCAGTGCGACCCGGGGTACGACCTGGTGGGCCGGGAGACTCTGCTCTGTCAGTGGGACCTTACCTGGAGCAGCCTGCCCCCCTTCTGCgagaagagtgagagagagggagaggaggaggTAATGTACTGCTCAGACCCGGGCCATGTGGAGCACTCGACCCGCACTCTCTCGGACTCTAAGCTGCTGGTGGGGACGACCATTCAGTACACCTGTAGCCCTGGCTTCATCCTGCAAGGCGGTGCCATCCTCACCTGCTACGGTCGTGAGCCCGGCACCCCGCGGCTCTACCTGCCTGGGGAGTCTCTCACCTTCATGTGCTACCAGGGCTACGAGCTGATTGGAGAGATTGCCATCAAGTGCATACTGGGGAACCCCTCCTATTGGAGTGGGCCACTGCCACTCTGCCGAGCAAATCAGGACTGCTTTGACAACCACGCCTTGGAGGtggcaGAGGCGGCTGACTCCTcggtggagggggggggtacTGCGCTGGCCGTCTTCAtcctggtgctgctgctgtcagTGCTGCTGGGGGGGGCCTATGTGTATATCACCCGGTGCCGTTACCACTCGAACCTGCGCCTGCCGCTGATGTACACGCACCCCTACAGCCAGATCACCGTGGAGACGGAGTTCGACAACCCCACCTACGAGACCGGAGGGGGTCTGAAGCTGCCCCCCAGTGTGCAGAGCAACTACAGACTGAGCCAGAGACAgcgggagggagagaaggggaggggaggaagagagagagggaaagagagtgtaggggagagagagagggaggaagggaaagggagGGGACAGTCTGTCTCACAGCTCATCCCAGACGAGCCGCTCTGTCTGTCGAGCCTCGGTGGCTTATCTCTGCGCTGTGGGCAGTGCGGGGTTAAGGTTTGGACCGAGCCGCCGAGCCGAGCAGAGCCGAGCTGGCACGCTCCCAGACCGGCACTAGGACACGCCGCCGTTACAACAGTGAGCTCCGAGGATCAGTCGCGCCTGCGGGCCGGCAGACCCGGGTCTTTCCCCCTGGCATCGAGCCGCCGAGCCGGGCATCAGCTGAGCCACAGGTGCAGCACCGCAGCCCCCCTGCGCCTGCGCACAGGCCGCTCAAACGGTGTGGGCTGCCTGCTGCTACTGTTCCTGTGGTACTGCTACCGCATGGGCCGCGACCAGGGCCCCACCCGCCGCTACCCTGAGCTGGGGGGTGCGGGGTCCAGGGGAGTGGCAGGGGGGGGCGGGACAGGGGGGGCGTCGGTCAAAGGAGGGCTGGCACTGGGCCGGGGCTCGGGGGTGGGGCTGGGAGGGGGGCAGAATGGATTCGCCTACTGCCAGTCACCAGAGTGCTTCCGCTGCTCAGCGCCGGGGGAGGGGCTGAACCAGCGGCTGTACCACAGCCTGCAGGAGTACGCCAAGCGCTACACCTGGGCGGGCATGGGCCGCGTGCACAAGGGCGTGCGGGAGCAGGGCCGATACCTGTCCGCCCGGCCCGCCTCCATCCAGCGGCCCGAGGTGTTCTTCCTGCCCGACCTGCCCAGCGCGCCCTACTTCTCCCGCGAGGCGCAGAAGCACGATGTGGAGCTCCTGGAGAGGAACTACCCGGCCCTGCTGGCTGAGTTCCACAGTGTGTACCGCCCCCCCACTGGCGCCTCCCCTACCACCCCCCCTGGCTGGAAGGCCAACAGCACGCCGCAGGGCCAGTGGCTAACCTTCTACCTGGTGAACCAGGGAGTGAGCGTGCCACAGAACTGCCGGCGCTGCCCGCGCACGTACCGGCTGCTGGGATCCCTGCGCACCTTCCTGGGCAACAACGTCTTCGGCAACGCCTGCTTCTCGCTGCTGGCTCCCGGCGCGCTGATCTCAGAGCACTACGGGCCCACCAACGTGCGCCTGCGCTGCCACCTGGgcAGTGCAGAGGACGGCCCTCGAGTGGTCTTCATGGTGGACCTGTGGCACCCCAACGTAGCGGCAGCTGAGAGACAAGCCCTGGACTACATCTTCAGCCCTGGGCGATGAgcgagcgagggagggaggggggagggatagagggagcagacagacagacagacagagggacagtgaTGGAGGGGAAGGGGCAGGCTCTCTATTTCCctatctgtgtgtctctctgtctgtcacaTTGTCAGTCTGTTTCACTGTATTACTGTCTCTcattctgtccctctctgtccccagGAGGGCATAGTGTATGGTATATTGGCTGGGATCaggacttgtttgttttgttgcgtGATTCTTTCCACTGTGACGGAGCCACACTGGCCAAACCCCCACCCACAGacagggacctgttctgagctCTGCTGTCACTGGTCTTGTGCCCTGTCTGTAGGGGGCACTGTTTTCTTCTCAGGCACATTGGGTCGCCTATTTCAGCAGCTGTGATATTCTGCTGAACAGCAGCTGTGCCGACAGTGGGGCACAGCCTGGCCCCTCTGCACCTGCCGGAGAGACTCAGGCACTCTGTGCACTGTGGACACTGCCTCTAGTGGACTGTGGAACTCTGCAGACATTGTCTCTAGTGGACTGTGGGACTCCGTGGATACTGTCTTTAGTGAACTGTGGACTGTTGTGGATGGTATCTCCCGTAGTTTCCAAGGATAGCTTCTCTGTGGACCATGTCTCCAGTGGACTGACTGGGGAGTGTTTATTCTGCACTGGACTCTCTGGACTGGGACAATCTGTCCTGTACAGCACACTCCTCCTGCCCAACGACCCAGACTACATGCACTataacacaacactgcacaattGCTCAAAACTGCACAGCACTCTATTGCACAACACTGCGCTATAGCACAACACtgcacagtccagtccagtcagtgactttgcagcagtccagtccagttagtgactctgcagcagtccagtccattTGTTAATGCCTGAGTTATTACTCATGATTATTTGTAAGATTATTGATTAACTGACACTGAGTTCAGTGAATGTGTGTACATGAAAGTGAGTTTTGTATTGCTGTCGTCCATCTATCTGAGCAGGAAGAGAGCGACTgctgtaaaacatttacattccGTTGGTTTATCGGTTGTTCTATTgagcattttcataatttattggttgattgattaattattctctctcctctctggttCTTGGCTTTGGTGTTTTTGCGAACAAaagcagtaaaatgtatttccattgaACATGGCTGTGTGGGACTATACTCCCTGTTCTCTCAGGAACCTCTTTGTCTCTCAGTGGGGGGGCATATTCTTGCTTTGAAATTTCTGGTAAGTCTGGAAGTAGCACAGACTTCCttcacaattattaatattacataagTTTAAAAGTCTGTAGAGTTATGCAGAAAGATTATGGAACCTGTCTGAGACAGAGGACAGGGTACAGAGTGGTGTTCTGATGTCTTTAATGTagcacacaaacaaagacacagGGACAGCATTAAACagtaataacattaataacagtATTCATAGCACTGGCCTCagggctgcacacacacacacacacacaataaatctctggttatatacagtatttacagcACTGCGCCCCCAACCTCCCCAGGGAAACG
>TU146737
GTCGAGCCTCGGTGGCTTATCTCTGCGCTGTGGGCAGTGCGGGGTTAAGGTTTGGACCGAGCCGCCGAGCCGAGCAGAGCCGAGCTGGCACGCTCCCAGACCGGCACTAGGACACGCCGCCGTTACAACAGcatCATCACTGGGTCTCTGTTGTGAAGGAGTTGTCAGCCTGCAGTCTGAGCCAGACCAGCACAGTCACCATAGGGGGTCACAGAGAGTTCAAGCCAACAGCCTTATCTCAACCTGCTCTTACTGAAGCATCccagtgtcagtcagtgtccaCCTCATGTTTGGCTAGGTCTCTCCAGCCCCCCCACTCTTTCGGTCCAGTCAGCTCAGTCAGGATGGCagagtggggggggtgctgtgcGTCGCGCAGTCAGGCGGAGCACAGAGGGAAAGTGTAGAGACACTGTAACGGGGGGATCGGGGAAGAGAGGGCGGAGGGAGTCAGTGAGCCTGTCAATCAGACATAGTCAAGGGGAGTGTGTCAgggagtgagtgtgtcagtcagtcagtgggtGAGTGAGTCAGTGGATGATGGAGTGGTCTCTGGATGGGCTGCGGGGGCTGGTGGGTGGGGGCATGCAGTCAGTGCGGGAGTGTGAGAGTGGCGCTCTGGCCAGTGTGGGCTGCCTGCTGCTACTGTTCCTGTGGTACTGCTACCGCATGGGCCGCGACCAGGGCCCCACCCG

Function

NR:

description
PREDICTED: seizure 6-like protein

GO: NA

KEGG:

id description
K24363 SEZ6; seizure protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018555 True 5399 mRNA 0.60 19 14242545 14263154
TU146737 False 695 lncRNA 0.61 2 14245418 14248073

Neighbor

gene id symbol gene type direction distance location
AMCG00018554 msi1,LOC100704609 coding downstream 19228 14208436 ~ 14223317 (-)
AMCG00018556 NA coding downstream 36422 14205321 ~ 14206123 (-)
AMCG00018557 NA coding downstream 40258 14201096 ~ 14202287 (-)
AMCG00018544 LOC107658624 coding downstream 58254 14182493 ~ 14184291 (-)
AMCG00018543 NA coding downstream 64233 14174101 ~ 14178312 (-)
AMCG00018560 NA coding upstream 2941 14266095 ~ 14288995 (-)
AMCG00018561 grk3,LOC107689528,LOC107758628 coding upstream 30064 14293218 ~ 14316293 (-)
AMCG00018563 NA coding upstream 58177 14321331 ~ 14328617 (-)
AMCG00018559 NA coding upstream 69638 14332792 ~ 14359292 (-)
AMCG00018562 NA coding upstream 105930 14369084 ~ 14370273 (-)
G117122 NA non-coding downstream 8921 14232796 ~ 14233624 (-)
G117066 NA non-coding downstream 142438 14095291 ~ 14100107 (-)
G117015 arpc1b non-coding downstream 276276 13897500 ~ 13966269 (-)
G117012 arpc1a,LOC102781765 non-coding downstream 352442 13887421 ~ 13890103 (-)
G117011 arpc1a,LOC107388895,LOC107674705,LOC107703414 non-coding downstream 355178 13886309 ~ 13887367 (-)
G117221 NA non-coding upstream 49104 14312258 ~ 14399555 (-)
G117223 NA non-coding upstream 58931 14322085 ~ 14408949 (-)
G117227 NA non-coding upstream 94281 14357435 ~ 14402346 (-)
G117234 NA non-coding upstream 103311 14366465 ~ 14367911 (-)
G117245 NA non-coding upstream 154211 14417365 ~ 14459293 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 514675 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 985295 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 1952001 12287568 ~ 12290544 (-)
G116577 NA other downstream 2331209 11911014 ~ 11911336 (-)
G116428 NA other downstream 3039657 11199578 ~ 11202888 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 240249 14503403 ~ 14520875 (-)
G117377 NA other upstream 472984 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1235508 15498662 ~ 15518315 (-)
G117784 NA other upstream 2745744 17008898 ~ 17009301 (-)
G117823 NA other upstream 2962936 17226090 ~ 17256271 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_05416830_05423957 ASPHD2 coding CI01000053 null 5415744 ~ 5424697 (-)