AMCG00018558


Basic Information

Item Value
gene id AMCG00018558
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14361036 ~ 14367961 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018558
CTTGGCGATTCGTCGCCATTACAACAACAAGCTTGTGCTCCTGCGAAGCTACGGTTTCTTTCGGGGCGACAAACTTGCCCTCGCCGCGCCCGTTCTCCTCCGCCTGGAGACAGGCTATCTCCCTGCCAGGGGCCGTGGTCTCCCTCCGGATTAACAAAACCAACAATTTAAATCGAGCGGTCGAGTCTACAGGCCACGCTTAGCTGAGCTAAATTCACCCCGGCGCCGCGTCTCTACCTTTACCCAGCTACCTTTCTGCTTTTTTTCGGACGGCCTTGATTCGtcgtttttttcctttctttggtTTGTTGTCAAGATGTCGCCGTGATGGAGTGTCCTCCGTGTCTGGAAGCCATGAACCTGGGCCCCGGCCGCCTGTTCCTCCGCAGTCGCACACTCCCAGCCTCCCTGTCTCCCCAGATCGTTGCCCCGTTTCATGATAGTGGGCTCGTCGGACTGTCCATCTCCGGAGCTCGACCCCTTTATCAGTCTCGTCAGCTGCAGTAtagaaatggagaaaaataccAACAGCAACGCCAACAGCAAAGTCCCGCCCCGATCTGGGTCGGCTGGGCCAGCCACAGGCGATTCTAAACCCAAAACAGacagtAAGAATGGCAGTGGCTCTAAGCAGCGCTACAGTCGCAAGCGTGAGCCGTCCTTCCCCAAGAGCGAGAGCTTCTCCGGCCCACgccgcccccccccacagaaAGGCAAGGCCTTCGACAAGCGCCCCCCCcagaggggagggggtggcCGGCAGTACGGCGGCAATGGGGGTGGACGTAGAGAGGAGGTAGCAGAGACCCAGCGAGCAGAATTCAGCCCGGCCCAGTTCGCCGGACCCAAGAAGATCAGCCTGAACCACCTTCTGAACTTCACGTTTGAGCCACGTGGGGGAGCCCCAGGGGGGGGCGACGGCCATGGCGGCTGGGGGCGCCGCAACAAGTGGGGCCACAAACACAAGCCCTTTAACAAGGAGCTGTTCCTGCAGGCCAACTGCCAGTTTGTGGTGACTGATGATCAGGACTACACTGCACACTTCACTGACCCGGACACACTGGTCAGCTGGGATTGTGTCCAGCAAGTGcgtaTTTACAGCCATGAGGTGCCGTCCTGCCCCATCTGCCTGTGTCCCCCCCTGGCCGCCCAGGTGACACGCTGCGGACACATCTACTGCTGGCCCTGCCTGCTGCACTACCTGTCCCTGAGCGAGCGCACCTGGAGCAAGTGTCCCATCTGCTATGAGCCCGTCCAGAGCAGCGACCTCAAGAGCGTGGTCGCCATGGAGACGCGCCAGTACCTGGTGGGCGACACCATCACCTTGCGGCTCATGCGGCGGGAGAAGGGTGTCCTGGTGGCGCTGCCCAGCCCGCAGTGGATCAAGGTGGAGGAGCCCATCCGTCTGGGCGATGAGCGGCTCAGCCCGTACTCCAAGCTGTTGCTGGCGTCTCGGGGGCAGGTGCTGGAGCAGGTGGTGAGGGGGGAGCGCGCCGTGCTGGAGCAGCAGCTGCTTGAGGAGGAGGGCTGCCCCGAGGCCTGCTTCATACAGAGCGCCCTGCACGAGCTGCAGGAGCGTGAGGCTGTGCTCATGAGGTCCAGCCCAGAGGAGGTCACCCGCCCTGAACCCAGCCTGGCCTCCCTGACCCTGGAGGACCCCACTATGCCCTCTGAAACTGGTCCGGGGTCCACAGGCAGCTCCAAGcCTGTACTGCAGTATTCCTCAGCCTTTGACGATGAGGTGCTCGAGGTCACTGACCTCCCTGACCCTGTGGGCGAGGACTCCCCACTTGAGCTGCCCCCCATCCCCACTGAGCCCGAGCCGGAGCAGAAACCGGATCAGGAACAGCAACCCCATGCCACAGTGGCCCCCCCTTGCCAACGAGAGAGCCAGGGCAGTGGGCCCTTTTACTACTTTTACCAGGCAGAGGACGGGCAGCAGATGTTCCTTCACCCAGTGAATGTGCGCTGCCTGCTGAGGGATATCTGTGAGCTGGCTCTGGATCACCCCCTGCTGTCCAGGGAGACGCTGGACACCTTTGCAGatGACTTGGAGAAGAGGAAGCGTATCCGTCAGAAAAAAGCGAGGGATGAGCGCCGGCGAGAGAGACGCATTGAGATTGAAGAGAACAAGAAGCAAGGGAAATGTGAGGAGAGGGAGCGAGTGTTTGAGTGTGGGGgtgACCCAGAGGTGCACATCGGCCTGGAGAATCTGCAGCAGTTCCCTGCCTTCGGCTCCCCCCCGGCGGACAGCAGCTTCCCTGCACACCTTGACctgctgctgcccccccccccgcccctctgCTCCAGCCCGGCCTCAGACAGCGTGGGTGTGGTGTTTCCCTCCCTGGGGGGCCCCTCTCCTCTGCTCTGTGTGGGCAGCCTGGAGGAGGACGCTCACTGCCCTTCCTTTGCTCAGATGCTGCGTGAAGGGAAAGCCAGGGTGGAGGGCTGGCCCAAAGCCCCCCCAAAGAAAGtggaGGGGGGCTTACTGCCCCGGCCCAGTGTGGATAGCGATGGTGAGAGTGACGGGTCAGACCGGGTCCCGGTGCCCAGCTTCCAGAACTCCTTCAGCCAGGCCTTTGAGGCGGCACTGCTGCAGCTGGATCACGGCCCGCGGGTTGCTCCAGAACCAGCCCCACTGCCAGaGGAGAAAGgagggaagaagaagaagaagaaacagaagcTCCTGTTCAGCACTTCGATGGTTCACAGCAAATAGCAGCAGCTCTCCGCACTGccctccctccatccatcccccatctctcccctccctccatctctcaaACCCCACTGTCGCTAATACTACTGCCTGTATTAATACACAGCCTGTCACTCGCCCCTCGCGCTGCTTTCAGTCCAATACAGCAGGGTCTGAATGTGAGACGGGCCGCCTCCCTCCGCAGTGCCGTCCCCGGCTGGGTTCAGACCCACCACAGTCCGCCGTGTCACACTGTCTGCAGCAGAGACCAAGGACTGATCGCTGGTCCAGTGTGGGCGCAAGATCGGATGATGCAGAATTCTGTCAATTATcctcccctcttcctctcctccactCATTTGTCCTGTTCCTTCTCTCCTGCCCCTCTCCAGTGTTGATAAAACACTCAAATTCTCATGTATTGTTGGTAAAGCTTGATGCAGTGATTTAATTTTCCTCTTGGTTTTTTGCTAGATCTATTTCTTTTGATTTTCGGGGTTGGAAActaatatttaaagtttttttgtttttttttattctctattaattttgttttcattttgaagtgaAAGTTTAGAGTTTAAGGTGACCGAATTTACAAAAGCAGCCAGCCAGCAGACAAGTATgatgcattaataaaaacattatgcaCAAACtacatatgcatttgtttttcctgtgctgGTTTCTTGTGTGTATGAGTcttga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018558 True 3409 mRNA 0.58 17 14361036 14367961

Neighbor

gene id symbol gene type direction distance location
AMCG00018550 NA coding upstream 123087 14232722 ~ 14237949 (+)
AMCG00018552 LOC108412053,LOC101077666 coding upstream 128722 14230990 ~ 14232314 (+)
AMCG00018549 NA coding upstream 160692 14192138 ~ 14200344 (+)
AMCG00018539 NA coding upstream 199298 14159663 ~ 14161738 (+)
AMCG00018547 NA coding upstream 249126 14111704 ~ 14111910 (+)
AMCG00018568 NA coding downstream 21065 14389026 ~ 14389346 (+)
AMCG00018570 NA coding downstream 24348 14392309 ~ 14393844 (+)
AMCG00018569 unc119.1,unc119b,LOC107712459,LOC107753165,LOC107550938,LOC107687994 coding downstream 36445 14404406 ~ 14406978 (+)
AMCG00018565 sppl3 coding downstream 52314 14420275 ~ 14431626 (+)
AMCG00018566 NA coding downstream 77259 14445220 ~ 14446081 (+)
G117131 NA non-coding upstream 115718 14244708 ~ 14245318 (+)
G117130 NA non-coding upstream 116833 14242864 ~ 14244203 (+)
G116976 NA non-coding upstream 513944 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 521065 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 669669 13666023 ~ 13691367 (+)
G117197 NA non-coding downstream 70031 14437992 ~ 14439091 (+)
G117209 NA non-coding downstream 166002 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 368135 14736096 ~ 14738327 (+)
G117381 NA non-coding downstream 415545 14783506 ~ 14784333 (+)
G117382 NA non-coding downstream 418064 14786025 ~ 14786487 (+)
G117178 NA other upstream 13295 14345090 ~ 14347741 (+)
AMCG00018551 NA other upstream 118319 14239242 ~ 14242717 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 169959 14189003 ~ 14191077 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other upstream 215041 14141377 ~ 14145995 (+)
G117033 NA other upstream 311883 14046259 ~ 14049153 (+)
AMCG00018567 NA other downstream 40997 14408958 ~ 14412279 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 406154 14774115 ~ 14777110 (+)
G117383 NA other downstream 418662 14786623 ~ 14788133 (+)
AMCG00018602 LOC102789415 other downstream 586603 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2700251 17068212 ~ 17069670 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G74445 NA non-coding NC_048565.1 CM023219.2 66787911 ~ 66788202 (-)
eurasian perch (Perca fluviatilis) G61431 rnf10,LOC102784202 non-coding NC_053117.1 CM020914.1 14365232 ~ 14368488 (+)