AMCG00018559


Basic Information

Item Value
gene id AMCG00018559
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14332792 ~ 14359292 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018559
AGCCTCCGATCCTTTACTTTCCACTCCTGTCAGGTTTGGTTGAGGAGCACAGCGAGGCAGTGAGGGAAGGTGAGACACACTCGGCAGGCAGGTGGTCGGATAATTCATTGGACTCGGTTTCTTCTGCCTCTTCACCCAAGAACAACAATCAGCACTACAgTGTTTCCTCCCTGCTCCCTGTGATGACATCGCTACAACATTGCCATAGAAACCAGACAGTAAACTGCCAGGCAGTCCCTGAGTGACAGTCTCGCAGTGTTTACTTGCAGCCGCAGTGTGATCGGCACATCAGTCAGCCTGTCAGTCAGACGGTCACCATGGCTGCGGAGGTGGAGTTGAAGACTGGGCCGGGGGGGCTGCGTACACACCTGGGCCCCCTCACTGACTCCAGCAACACTCCCCCCCCTGAGCCCCCGGGGGCGCACCCGCTCATCCTCCCCGCCAACCCCCCTAAGCCAGTCCCGGGGCCCAAACCCAGACTGACACCCAAACCCTTCAGTATCGACCGGTCTACTTCAATCCGGCCCATCCCGGCACCCAAGCCCAGCCTCAGAGCCGACCTGCCCAAACCAAAGACTCCACCCCCCCATGCCTATGCAGTCCGTCCACAGCACCCCTTCGATCCACCCAACCTGAAACCAGGGCCCCCCTCGGCTCCCGCCCAGCCTGGCTCCAAAGCCCCCATCAGTTCAGCCTCCCCCTTCAAACCCGGCTCCCTGTCCACGCCCCCACTACCCAGCCATGCCCCCCCTGCCCAGCACACCCCCCAAGCCCAGGCACCCCCGGTTGCACCCACTTCCCACTCAACGCTGCCCGTAGCCCCACCACAGCGCGTCACTGTGATTGAGATGCAGGGGGTGCTCCAGAGAACACGCTCTGTGTGCACGGGGCGGCAGGGCAGGGCAATGGCCAAGCCCCAGGGGccggggggtggggtggtggcGGAGTGGTCAGGGACGACCAGGAAAGAGGATCGGGAAAAGGTGTCGATGCCCAGGGCCAAATCCATGGGCTTCCTGACCAGAGtgggagggaaggaggaagaggCGGCTCAGGGGGTCCCCACTTTGGTGCCCGCCCCGACCCTGCTGCGGTCGAACCGGGCCAAAACCACCAAGCCCAGGCCTGTGTCTGCTGTGCTGTCCCCCACTTCCCCATCCCCCACCTTGGACCCCGGAACCCGGCCCTGGGTGGCAGCCCGGCGGCCCCTGTCTTCTGACCTCACCTCCAAATTCGAGTCGACCAACCTGTCGCTGCAGCGCAAGGAAGGCAGCGTGGCGGAGAGCAAGGAGAACGAGCCGAGCGCAGAGGAAGTGGGCGGGGaggagagcgggagagaggggGTAGTGGCCAAGAAGGACAGGAAAGAGAAAGCAGGAGGGGAGGGGCAGAGCCAGAGAGGGAAGGAGCAGAAACTCAACCCCCCCcaggagagtgagggagagaaggagagcgaGGGGGAGAGGGCGGTGGCCCCGCCTGGAGGGAGTATCAAGCGGCGTATCAGCCAGCTCCTGGactcctcctcttcatcctcctcttctgtctcctccccctcttctgtgGGTGGAGTCAGTACCCAGGGGTTGGAGTCGCCACTGCAGCAGACCCCTCCCGTCTCTGAGGCAGCATCAGCCATGGGGGTGAAGCAGCGAATCAGGCAACTCACTGCTGACACGCCCACCACCAAGACTGACTCTCCCCGGAGGTCCTTTAAGCCCCGGCCCCTACCCATTGACCTCACAAAGAGGTTCACACCGGAGCGACCCAGCGAGGCCCTCCCCTCGGAGAGCGTAGTAACAAATAGTCAACTGGACAATGACAGCGACCTGCAGAAGAAGGTGGAGGAGCTATCTCCGGGACCCAGTGACCAGGTGgcaagagagagggatgaaggcaagggaggagagggagggaaagagaaaaaagaagaggaggaggagcagcggGCGCCACGTCCTCCATCCCCTGGCCTGCAGACTGTGCGTGCATCTCTGTTTGACAATGTGGTGGAGAGACACAGTGTCCTGGAGGACAAGCTGCTGCCCCAGGGGGAAAAAGAgcgagggggaggaggggagagagagaagggaggagaaATGTCCAGGAAAAGCCAGTCATTCCGCTATGgaggagtgggggtgggggtccaGAGGAACGCTTTGGTCTCTACGTCCTTCAGAGACCCGCCCTGCTCCTCCTCCACTCCCCTCTCACCTCCTCCCcactcctccccctccccctcaaaGACTGCAGGCTGCGAGGTTCTGACCCGAGTGAACCCCGTGTTCGACACCATCCCTGCATTGGAGGGGCGCCGGGCAGTCAGTGAGAGTCTGCCCCCCGCCCAGCTGGAGGACCGAGCGCTGACCCTGCGGTCCAGGAGGTCCGCCGGATCAGGAGTAGGGGCGGATCCTGCCACAGAGGTGGCCTTTGATGATTTCTCTGTGAAGCCGCGGCGCTGGGGCACTAAGGACCGGACCACCCAGTCCGGCAGGAGCACTGCGTTGGACACTGCGGAGCTGAGGCCCCGCGTGTTGGACCTGGACTCCCTGTCCCTAGATGGCGGCCCATCCCAGCCGAACCCCTACAGGCCCCCGGTTCTGGACATCGACTCATTCCGCGATGAGTACCGGCCCGCCGCCCCCCCAGCCCCGGCATCCCCCCAGGAGGTCCTGTCAGTCGCTGACATCCAGAAGGGCGTGGGCCAGTGGAGAAATGCAGCGCCGACCACCCCCCGCACGGACACTCCCATCTCCTCCTCTCAGCAGGCCTTCTGGGAGACCAGAGTgaaggaaggaggaggaggacgaggggCAGGGTGGGAGAGTCAGGACCCAGGACCCCAGACCCCCACTGCCGACCACACTCTCAGCCAGCACCCGAGGGCTGAGTTGAACCAGTTCCCACAGCAGCGCTGGTCCACTGTGCCGAAGGACCCAGCATCTCCGAGCTCGACCGGCCCCTGGAGTAGGGAGCTGGGTCAGGAGCCCCTCCCCGGCCCCGAGGCGCGCAGGCAGGGCTATGCTGCCCCATCTGAGGACCCCTCTGACTTTTGGTCCCATCCTCAGGATGGCACACACACCACCCTGCCCCCCCACGCCCCTACGGCAGGAAGCAACACACAGCCACCCAGGGACTCTCTGTCTCGGTCTCGCAGTGTGTCCCACAGGGCGCTGCCATTGGAGAGCCCCCAGGAGGGGTCCCTGGTCCGCGTGAGGAGCCGCAGCGCACACAGGGACAGGGCCGCAGGGGAGGATCAGCTAAGGCAATGTGTGAGACGGGcagggggagagggaaaggaCACGGACACGCTGGTCCAGGAGACGGACAGTCAGTATGGCACCTGGGAGACTGGACTGCGCTCCGAGGACAGCCTCACTCCTGCCTCCCCAACGGCTGACAGCCTTAGCTCCTCCCTGCGCAGACAGACGCCCTCCTCGACCTTTGACCCCACGACCCCCAGTGACCCTGATGGTGTGGAtggagtctctctctccctcagcacTCCAGGCGAGCAAGAGGACATCGTCTCCTTCCCTGAGcccGCCTCTGGTCTGTTGGACTGCAGTGCTCAGAAGTCTCGCCCCCGTCTCAGTCAGCGCAAGAAGCACCGCACCCTGCCTTCCCGCTCTGTACACCAAGGAGGGGCGCGGGGAGGGCTGGCCGTACTGCCTGAGGCCGGGGGGGCGTCGACTGACGACTGGCTGTACCGGGACTCCACAGAGGCAAAGCCGGAACAGTCTGCGCAGGAGGACTCTGACCCAGAGGACCAACCCAGGCGCACAGACAGAGCCAACGCCTCCCAGCCACCGATGGTCCCCCTTTTCCCTGGAATGGATCCTTCTGCCCTCAAGctgcggaagagaggagagggtgAAGGCGCTCCAGACTCCCCCTCCcagctctctcgctctcccaaGTCTCCCTTCGTCCCTGGAGCCAGAGTGCTGCCACCTGCTGTAGGGAAGGAGAACGGGGCGGAGGAGGCGTCCCCTCAGTGGCTGAAGGAGCTGAAGTCCAAGAAACGTCTAAGTCAGTACGACATGGACAATTAAAGGGTGGCCTTAATTGAGGGAACATGGGAGGAAGTTCTGACAGGAGCCTTAACCTTTTGACCTGGATATGAACTGCTGCTGCCATGGCCCCTGTTCCTCCTTGGGTTGCGATGTGCATGGTGCCttcatagaaaataaagaaaatatatattttttttgaacAAGCAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018559 True 4228 mRNA 0.63 14 14332792 14359292

Neighbor

gene id symbol gene type direction distance location
AMCG00018563 NA coding downstream 4175 14321331 ~ 14328617 (-)
AMCG00018561 grk3,LOC107689528,LOC107758628 coding downstream 16499 14293218 ~ 14316293 (-)
AMCG00018560 NA coding downstream 43797 14266095 ~ 14288995 (-)
AMCG00018554 msi1,LOC100704609 coding downstream 109475 14208436 ~ 14223317 (-)
AMCG00018556 NA coding downstream 126669 14205321 ~ 14206123 (-)
AMCG00018562 NA coding upstream 9792 14369084 ~ 14370273 (-)
AMCG00018572 NA coding upstream 51211 14410503 ~ 14417254 (-)
AMCG00018573 acads coding upstream 74654 14433946 ~ 14437780 (-)
AMCG00018574 NA coding upstream 78712 14438004 ~ 14443900 (-)
AMCG00018571 gnaz,LOC107555529,LOC107686467,LOC107744122 coding upstream 91643 14450935 ~ 14460678 (-)
G117122 NA non-coding downstream 99168 14232796 ~ 14233624 (-)
G117066 NA non-coding downstream 232685 14095291 ~ 14100107 (-)
G117015 arpc1b non-coding downstream 366523 13897500 ~ 13966269 (-)
G117012 arpc1a,LOC102781765 non-coding downstream 442689 13887421 ~ 13890103 (-)
G117011 arpc1a,LOC107388895,LOC107674705,LOC107703414 non-coding downstream 445425 13886309 ~ 13887367 (-)
G117234 NA non-coding upstream 7173 14366465 ~ 14367911 (-)
G117245 NA non-coding upstream 58073 14417365 ~ 14459293 (-)
G117253 NA non-coding upstream 117698 14476990 ~ 14477219 (-)
G117254 NA non-coding upstream 118803 14478095 ~ 14478937 (-)
G117293 NA non-coding upstream 218944 14578236 ~ 14588050 (-)
AMCG00018555 LOC107689851 other downstream 69638 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 604922 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1075542 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 2042248 12287568 ~ 12290544 (-)
G116577 NA other downstream 2421456 11911014 ~ 11911336 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 144111 14503403 ~ 14520875 (-)
G117377 NA other upstream 376846 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1139370 15498662 ~ 15518315 (-)
G117784 NA other upstream 2649606 17008898 ~ 17009301 (-)
G117823 NA other upstream 2866798 17226090 ~ 17256271 (-)

Expression


Co-expression Network