AMCG00018562


Basic Information

Item Value
gene id AMCG00018562
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14369084 ~ 14370273 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018562
ATGGTGCGATTCAAATCCAGatacCTGCTGTGTGAGCTGGCAGTGGGCGAGGGGCACTCTCTTCAGGCTGTGGAGGAGCGCATGCTGTTCTGGGCGATAAGGAATGCTGTGGCCCGCGCACATGGGGACTATGGCTCGGCTGTATTCAGCCAGTCTCTGGCAGtgAAGTACCTGAACACGCAGACGGGGGTTGTGTTCCTGCGCTGCCGTAAGAGTTACTATCGAGTGCTCTGGTCTGCCCTGCCCTTCATCAACCGCCTGGACAGCCGATCCCACAACGTGCCCTGCTCCCTCACCTGCCTGCATGTCGGGGgTACTATCCGGACGCTGCAAAAGTTCCTGATTCGCTACAACACTCGGCAGATCCAGCGTCTGCTGCCACACTGCCGCACTGAGGGTGAGTGGGAGGCTAGGGGCGCGTGGGGTCAGGGCAGGGGTGCAGTGAAGTGA

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0005730 nucleolus cellular_component
GO:0004526 ribonuclease P activity molecular_function

KEGG:

id description
K03537 POP5; ribonuclease P/MRP protein subunit POP5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018562 True 450 mRNA 0.60 4 14369084 14370273

Neighbor

gene id symbol gene type direction distance location
AMCG00018559 NA coding downstream 9792 14332792 ~ 14359292 (-)
AMCG00018563 NA coding downstream 40467 14321331 ~ 14328617 (-)
AMCG00018561 grk3,LOC107689528,LOC107758628 coding downstream 52791 14293218 ~ 14316293 (-)
AMCG00018560 NA coding downstream 80089 14266095 ~ 14288995 (-)
AMCG00018554 msi1,LOC100704609 coding downstream 145767 14208436 ~ 14223317 (-)
AMCG00018572 NA coding upstream 40230 14410503 ~ 14417254 (-)
AMCG00018573 acads coding upstream 63673 14433946 ~ 14437780 (-)
AMCG00018574 NA coding upstream 67731 14438004 ~ 14443900 (-)
AMCG00018571 gnaz,LOC107555529,LOC107686467,LOC107744122 coding upstream 80662 14450935 ~ 14460678 (-)
AMCG00018584 NA coding upstream 159729 14530002 ~ 14539282 (-)
G117234 NA non-coding downstream 1173 14366465 ~ 14367911 (-)
G117122 NA non-coding downstream 135460 14232796 ~ 14233624 (-)
G117066 NA non-coding downstream 268977 14095291 ~ 14100107 (-)
G117015 arpc1b non-coding downstream 402815 13897500 ~ 13966269 (-)
G117012 arpc1a,LOC102781765 non-coding downstream 478981 13887421 ~ 13890103 (-)
G117245 NA non-coding upstream 47092 14417365 ~ 14459293 (-)
G117253 NA non-coding upstream 106717 14476990 ~ 14477219 (-)
G117254 NA non-coding upstream 107822 14478095 ~ 14478937 (-)
G117293 NA non-coding upstream 207963 14578236 ~ 14588050 (-)
G117319 NA non-coding upstream 265131 14635404 ~ 14636339 (-)
AMCG00018555 LOC107689851 other downstream 105930 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 641214 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1111834 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 2078540 12287568 ~ 12290544 (-)
G116577 NA other downstream 2457748 11911014 ~ 11911336 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 133130 14503403 ~ 14520875 (-)
G117377 NA other upstream 365865 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1128389 15498662 ~ 15518315 (-)
G117784 NA other upstream 2638625 17008898 ~ 17009301 (-)
G117823 NA other upstream 2855817 17226090 ~ 17256271 (-)

Expression


Co-expression Network