AMCG00018564 (mlec,LOC106579938)


Basic Information

Item Value
gene id AMCG00018564
gene name mlec,LOC106579938
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14330841 ~ 14399539 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018564
TGAATGGACATTAAGGAGAATTATAATACGGCcgataatataaataataataataataataataataataacaacaacgaGAGTAATAATTTCAGATACGAcgcaagattaaaaaaagaactgaACACGGAAGAGCAAACGCAGAGAGACACGGAAGACAAGGCACTGTACATGAGAAGAGGCAGTTTgcagaaatatttataaaatcgTGCAGGACGAGAGTGACAGCGTGTGGGACAGCTGGACGCGGGGCGCAGCTGCACACTGCGGCTCTGCAGGAGGAGGCATTTAAACAACGAGGAAGTATTACTCCTCAACCGAAATAGTTTGcagatttttaatatatatatttatttattttaaatttaaaagtgtACAGAGACTTTTCCCCCCTTCCTTCATACAAACACGTTCCTGCTTATCTCTCTTGACTTTGCAAACGAGCAGACAAGAAATCCACCCAATCATTTCTCTCCACTGaactgctgctgccgctgcacCGGTCGTTGCTGGATTCTGAGACCCGGCTCGGAGGTCTCATGCGGCGGGATGTGGCGGTGTGGGGGCCGGGGCTGGCGGTCGCTGTGCTCTGGCTAGTGGCTGTGTGGGAGCCTGTCCGGGGGGACGGCGGGGGCAGCAGCTCCGGCACGGGCAGTTTGGCCGACCGAGTGATTTGGGCCATTAATGCCGGCGGCGAGGCGCACACAGACATCTACGGGATCCACTACCGGGCTGACCCGCTGGAGGGGAGGGTGGGAAAAGCCTCGGACTATGGCATGCGGTTGCCCATTCTGCGGTCCAGCCCGGAGGACCAAGTGCTGTACCAGACAGAGCGCTACAATGAGGACACGTTTGGGTATGAGGTGCCGGTGCGGGAGGAGGGCGACTATGTGCTAGTGATGAAGTATGCTGAGGTCTACTTTGCACAGTCTCAACAGAAGGTGTTCGATGTGCGTCTCAATGGGCACGTGGTGGTGCGGGACCTGGACATCTTTGAGCGCGTGGGCCACAGCACTGCCCATGATGAAGTCGTGCCCTTCTCGGTGCGCCGCGGCAAGCTGAGTGTCCAGGGTGAGGTGTCCACCTTCAACGGCAAACTGACCGTCGAGTTCGTCAAGGGTTATTACGACAACCCCAAGGTGTGTGCGCTCTACGTGATGAAGGGAACGCTCGATGGTGACAGCCTGATGTTCCCCATCCTGGTTGCTTTCGGGGTCTTCATCCCCACGCTGTTTTGCCTTTGCCGGCTCTGA
>TU146778
TCAGGAAGCTGGCTTATTTTATAGTAAATTTATTAGGAGGTCCACAGTCTGACACAAGGGTCGGAGTCAGGCTGTAATACATGTatctttaacattaaaaaaataataataatgaaaaaacagattgaaaccctcccagacagacaggaaatGGAGTCAGAATGACAGCAGAATCCAGATCAGCTCATGGGCTGAGAAACGGAGCGTTACGATTCACTTTACACAAAATATtactgaatataaaaaatgttgacAATCGGACTGTGTTTGATCGTAATTCTAGCACAAGAAAATgatcaaaatacagaaatacattccCCAGGAGGTGGGACTTTGAGCAGGGCCTGCTGTAACTAGGGGCCGCTGTTTGTCATTGAGCTGTCACTCAGAGACAGGTGAAGCTGGTCAGTGGAGATTGGAGGTGTCACTCAACAGAGACCAATCCACCCAGCAAGGTGATGTGATGTGTTGCAAATTATGATAAATCCAGAACTAATGCCTACATGTTGTCTAGACTGTAACCCTCTGCatatagtgtatatacactgtacACCTGGTCTATATAGACAGTACACACTGCGAACCTGGAGTATAGACTGTACACACTGTGCACCTGGAGTATAGACTGATGAACACTGCACCGCAGGTGTAAATAGACTGTACACAATTCCTGGCCCAACACTGTACAGTTTCCTGTCCTGCGCTCTCACCTGCACACAGACCTGTCAAAACACACGGCCTGAAAAACATTGACGAAAGCACTACCTGACACACTatctcccacccccccactttTCCCAGACACAGGACAGAGTGCAGAGTGCAGAGTGTGCAGAGGAGGAAAACACAGCAAATTCTTCTCATCTTTCTTTGCGATTATTTGTTCAAGTTGAggagaaaactaaaaagaatATCGTCGtaagaaaactataaaaaagTTTGTTAGATCATCGGTTGCCGGATTTATATTTAGGCTGATTTCTATTTATGTTGatatttccattatatttatatttctatacatgagggggggcggAAGACCGCGGCAACGGCGGTGCCCAAACACCGGGTGCAGTCGGGCCCTCGGACCCCCAACCCCTATGCCTCCGACAACAGCAGCCTGATGTTCCCCATCCTGGTTGCTTTCGGGGTCTTCATCCCCACGCTGTTTTGCCTTTGCCGGCTCTGAGAGAGagagagagagagagagagagagagagagagagacacgaaGATGGAGATGCAGCCCTTGTTTTTGCGCTTGATCGAACTGGAGTCGccgagagaaggagggagggagagtaaGAGAGacactgatatatatacacacacacacgcacacacacacacacacacacactagactGATACACACAGTTGCTGTAGGACTGTGAATCTCCAAGACCGGATTGGCCACGCTCTGCAAGAAGTGGGCATGAACCGTCGCTCTGATTAGCTGCCCGATGCCTCCGTGAGAACTCTGGCTCGTGAGTGTGATGCTTTTCTGAAGGGTGTGGTTGG

Function

symbol description
mlec Predicted to enable carbohydrate binding activity. Predicted to be located in endoplasmic reticulum. Orthologous to human MLEC (malectin).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018564 False 1253 mRNA 0.53 5 14395003 14399115
TU146778 True 1521 lncRNA 0.46 4 14330841 14399539

Neighbor

gene id symbol gene type direction distance location
AMCG00018550 NA coding upstream 92892 14232722 ~ 14237949 (+)
AMCG00018552 LOC108412053,LOC101077666 coding upstream 98527 14230990 ~ 14232314 (+)
AMCG00018549 NA coding upstream 130497 14192138 ~ 14200344 (+)
AMCG00018539 NA coding upstream 169103 14159663 ~ 14161738 (+)
AMCG00018547 NA coding upstream 218931 14111704 ~ 14111910 (+)
AMCG00018569 unc119.1,unc119b,LOC107712459,LOC107753165,LOC107550938,LOC107687994 coding downstream 4867 14404406 ~ 14406978 (+)
AMCG00018565 sppl3 coding downstream 20736 14420275 ~ 14431626 (+)
AMCG00018566 NA coding downstream 45681 14445220 ~ 14446081 (+)
AMCG00018580 NA coding downstream 77379 14476918 ~ 14478333 (+)
AMCG00018579 NA coding downstream 79541 14479080 ~ 14495801 (+)
G117131 NA non-coding upstream 85523 14244708 ~ 14245318 (+)
G117130 NA non-coding upstream 86638 14242864 ~ 14244203 (+)
G116976 NA non-coding upstream 483749 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 490870 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 639474 13666023 ~ 13691367 (+)
G117197 NA non-coding downstream 38453 14437992 ~ 14439091 (+)
G117209 NA non-coding downstream 134424 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 336557 14736096 ~ 14738327 (+)
G117381 NA non-coding downstream 383967 14783506 ~ 14784333 (+)
G117382 NA non-coding downstream 386486 14786025 ~ 14786487 (+)
AMCG00018551 NA other upstream 88124 14239242 ~ 14242717 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 139764 14189003 ~ 14191077 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other upstream 184846 14141377 ~ 14145995 (+)
G117033 NA other upstream 281688 14046259 ~ 14049153 (+)
AMCG00018537 radil,LOC107725399,LOC107722964,LOC107590699,LOC107564693 other upstream 308035 13997909 ~ 14022806 (+)
AMCG00018567 NA other downstream 9419 14408958 ~ 14412279 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 374576 14774115 ~ 14777110 (+)
G117383 NA other downstream 387084 14786623 ~ 14788133 (+)
AMCG00018602 LOC102789415 other downstream 555025 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2668673 17068212 ~ 17069670 (+)

Expression


Co-expression Network