AMCG00018567


Basic Information

Item Value
gene id AMCG00018567
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14408958 ~ 14412279 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018567
AGCAGCTCTCTCATGAGCCCCCAGTTCCCAACACAGCCCGGCTTCACTAGCTCAGCGTCTCAGATTCAATGGCCTGCTTGTAAAGAGGACCACAACTCCCAGAATGCTCTACTGCGAGTACTTCCCCTTTCGAGTAAAATGCACACGGCGGGGTTGCTTTATGTCCAACATGGCGGCGCCCAGGGCGGCACGGAGTGAGTCGGACTCCAGCAGCGAGGAGGACCAGGAGCGGTTTCGCGAGGCGGTTTGGAGCTTCGGAACCAACGGGACTAACGGCGTGCCCAAGCCGGGCCCAACAGAAAGGGGCGACGGTGACCAGAGGGCTGGAGTGTCGCTACAGAGACCAAGCCGGCGTGTGAGGACCGGTGACCACGAGCATGATGGGAACGAACTCCAGACAACCCCAGAATTCCGAGCTCACGTTGCAAAGAAACTGGGATCCGTGCTGGACAGtGTCCTCACAGAGGTGTCGGACACACGGATACACGCACATGCCCCTGCACTGGACTGCGAGGATGgGTTCCTGCTGTTCTCCACCTCAGTGCCTGGTCAGTCTGCAGAGGCCCCCCCTCACCGAACACCACGACGCCCCACCCCCAGCTCCAGTGAGTCAGACAGTGAGCTGGACTCCAGAGTGAGGCAGGCTGCGGTCTCTGTCTCCGACATCCTGCGGCACTCCGCCtgtcccagcatgcacctgTCCGTGCCCCCCTGCACtcaggaggagaaggagaagaagaaaaagaggaggagagagaacgAAATGGTGGAAGAAGGAGAGGGGGTCTCCGAGGAGTGTGCTACAGAAGGCACTGTGGGAGGAGAGACCGACACAGgcaagaggaagaggaagaagaagaagatgatgatGGTGAAGGAGTAGGAGAGGGGGagcagagaggaagaaagacCAACGGGCTGAGAggaaaaagaggagaagaatacaaaaggatgagggaaggagggagagggtgatATAGACAGACTgaccaactctctctctctgagctcctgccagagacagacagacactgactgcagcagtccagtccagtcagtgactctgcagcagtccagtccagtctgcTCCgttccagtcagtgactctgttTTCATGTGTTCCTTAAAGTCAGTGTACAGAAACAGTCTATAACTGGTGTCATTAAAACCTTTTGTAGTGATAAACAAATACTATTTATATTGTAATCAA
>TU146746
CGGCGCCCAGGGCGGCACGGAGTGAGTCGGACTCCAGCAGCGAGGAGGACCAGGAGCGGTTTCGCGAGGCGGTTTGGAGCTTCGGAACCAACGGGACTAACGGCGTGCCCAAGCCGGGCCCAACAGAAAGGGGCGACGGTGACCAGAGGGCTGGAGTGTCGCTACAGAGACCAAGCCGGCGTGTGAGGACCGGTGACCACGAGCATGATGGGAACGAACTCCAGACAACCCCAGAATTCCGAGCTCACGTTGCAAAGAAACTGGGATCCGTGCTGGACAGtGTCCTCACAGAGGTGTCGGACACACGGATACACGCACATGCCCCTGCACTGGACTGCGAGGATGgGTTCCTGCTGTTCTCCACCTCAGTGCCTGGTCAGTCTGCAGAGGCCCCCCCTCACCGAACACCACGACGCCCCACCCCCAGCTCCAGTGAGTCAGACAGTGAGCTGGACTCCAGAGTGAGGCAGGCTGCGGTCTCTGTCTCCGACATCCTGCGGCACTCCGCCtgtcccagcatgcacctgTCCGTGCCCCCCTGCACtcaggaggagaaggagaagaagaaaaagaggaggagagagaacgAAATGGTGGAAGAAGGAGAGGGGGTCTCCGAGGAGTGTGCTACAGAAGGCACTGTGGGAGGAGAGACCGACACAGgcaagaggaagaggaagaagaagaagatgatgatGGTGAAGGAGTAGGAGAGGGGGagcagagaggaagaaagacCAACGGGCTGAGAggaaaaagaggagaagaatacaaaaggatgagggaaggagggagagggtgatATAGACAGACTgaccaactctctctctctgagctcctgccagagacagacagacactgactgcagcagtccagtccagtcagtgactctgcagcagtccagtccagtctgcTCCgttccagtcagtgactctgttTTCATGTGTTCCTTAAAGTCAGTGTACAGAAACAGTCTATAACTGGTGTCATTAAAACCTTTTGTAGTGATAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018567 True 1210 mRNA 0.56 6 14408958 14412279
TU146746 False 1013 lncRNA 0.57 6 14409131 14412255

Neighbor

gene id symbol gene type direction distance location
AMCG00018569 unc119.1,unc119b,LOC107712459,LOC107753165,LOC107550938,LOC107687994 coding upstream 1980 14404406 ~ 14406978 (+)
AMCG00018570 NA coding upstream 15114 14392309 ~ 14393844 (+)
AMCG00018568 NA coding upstream 19612 14389026 ~ 14389346 (+)
AMCG00018558 NA coding upstream 40997 14361036 ~ 14367961 (+)
AMCG00018550 NA coding upstream 171009 14232722 ~ 14237949 (+)
AMCG00018565 sppl3 coding downstream 7996 14420275 ~ 14431626 (+)
AMCG00018566 NA coding downstream 32941 14445220 ~ 14446081 (+)
AMCG00018580 NA coding downstream 64639 14476918 ~ 14478333 (+)
AMCG00018579 NA coding downstream 66801 14479080 ~ 14495801 (+)
AMCG00018578 LOC104951472,LOC102789619,LOC107752382,LOC102207611 coding downstream 86320 14498599 ~ 14504059 (+)
G117131 NA non-coding upstream 163640 14244708 ~ 14245318 (+)
G117130 NA non-coding upstream 164755 14242864 ~ 14244203 (+)
G116976 NA non-coding upstream 561866 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 568987 13839716 ~ 13839971 (+)
G116941 NA non-coding upstream 717591 13666023 ~ 13691367 (+)
G117197 NA non-coding downstream 25713 14437992 ~ 14439091 (+)
G117209 NA non-coding downstream 121684 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 323817 14736096 ~ 14738327 (+)
G117381 NA non-coding downstream 371227 14783506 ~ 14784333 (+)
G117382 NA non-coding downstream 373746 14786025 ~ 14786487 (+)
AMCG00018564 mlec,LOC106579938 other upstream 9419 14330841 ~ 14399539 (+)
G117178 NA other upstream 61217 14345090 ~ 14347741 (+)
AMCG00018551 NA other upstream 166241 14239242 ~ 14242717 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 217881 14189003 ~ 14191077 (+)
AMCG00018538 LOC103397138,LOC107554284,LOC100698873 other upstream 262963 14141377 ~ 14145995 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 361836 14774115 ~ 14777110 (+)
G117383 NA other downstream 374344 14786623 ~ 14788133 (+)
AMCG00018602 LOC102789415 other downstream 542285 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2655933 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3568861 17981140 ~ 17983017 (+)

Expression


Co-expression Network