AMCG00018572


Basic Information

Item Value
gene id AMCG00018572
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14410503 ~ 14417254 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018572
aggaggaggaggaagaggagtttGCACCCCCCATCTTCAGGGAGCTGGACACCTTGAGCCCGGAGGAGGCGGCCAGGCAGAGGGCAGAGGTCGAGCGGCTGCTGCAGCAGGACTCCTGGCAGGTGGCCAAGCTAGTGCGGACATACATGAAGCAGCACAACCTTCCACAGAGGGAGGTGGTGGACTCCACTGGCCTCAACCAGTCCCACCTATCGCAGCACCTGAACAAGGGCACGCCCATGAAGACCCAGAAACGCGCCGCGCTGTACGCCTGGTACATCCGCAAACAGGGCGAGATCACACAGCAATTCACCAATGCCAGCAGAGGTCTGTCCTTGGGGGAGGAGCCTGGTGAGGAGGTTGCCAATAGAAAGGGCAGAAGAAACAGATTCAAGGTTTACAACTGGTTTGCAAACCGCCGCAAAGAGGAGGCGTTCCGGCACAAACTGGCGCAGGACGGCTCCTACACCGGCCAATCAGTTGCCCCCAGCCATGGCCACGGCCATGCCCCCCACGGCCACGGTCATAGCCACGCCCTCACAGCTAGCCCCAGCCATGGTGTGAAATACAACCAACACCAAACCAATGAGAGCCTGGTATCGAGTGGTCACCATGGAGACAGGGGTATGGGGGGTCAGCTGAGTGTCAGCCCCACCCAACTAGAGCCCAGCCACACCCTTCTGGAGAACTCCTGCAAATCTGTGCTGGTGTCAGCgggggagggcggggggggcTTGCTGCCCCCTGTTAGCACCCTGAGGGCCCTACATTCCATGCCCCCCCCCTCACCTGGCTCCCACCAGGGCCTCCTCATGGCATCTCTGCCCAGTGTGGTCAGTCTGGGTCCAGCAGAGTCCTCCCTGCTCATCGGTCTGGCCTCCAGTCAGTCCCAGACAGTTCCTGTTATTAACAGTGTGGGGGGCGGGCTCACCACGCTCCAGTCAATCCCGTTCCAGCAGCAGTTCCATGCCTCCCACCAACAGCCAATCATGCAGCAGTTCTCCAGTCACATGGGCCCAGGTTCCTTCATGGCCACAATGGCCCAGCTGTCACCTCACAtgtatggACACAAGCCTGACTTGCCACAGTACCCCTCCTCGAGCCTGCTGCCCCCGGCCATGCTGATCACGGACACCAGCAGCCTGGGCACCCTCACCAGCCTCACCACAGTCAaacagATCCTGACAACAGACCCTGATGACCAGTCTGACCACTCTGGGCAGCTCCCCCACCAGGACAACACTCTGCACCTGCACACCAGCTCACCTGTCACAGGTAACACACTGATGCACGCCAGCTCTCGCGGCACAGGTATCACACTGACTCATGCCAGCTCACCTGGCAAAGGATCTTCAGGCAGTCTAGAGCTCTATTCCTCCTCCCAGCCCGGCGACCAGCACCACCCCCATCTCCTCTCCCCCGAGCCCACAGATATTGACCCCTACATGCCAGCACAGATGGTCTCCTCCACCCAATAACCACAATGGACCTGGGCAGTACCACTTCACAAAAGTGGGAGCCAAGTGGTACTGAGCCAAAACACACTGATGGAAgatgagggaggggggagagggagggagaaagagagtgaaAGGGGCAATGAGATTGAGAGTatgtgcgtgtgagagagtgGGGAGAGATTCAGATTCAGTAGAGAATGTATCAGAACGAACACTGGAGCTCCAGGGAgaccatattatatatataaataaaataaaataaaataagaatgacaaatgaatgaaaaataataaaatgacaaacagTTGATTACAATATAAATAGTATTTGTTTATCACTACAAAAGGTTTTAATGACACCAGTTATAGACTGTTTCTGTACACTGACTTTAAGGAACACATGAAaacagagtcactgactggaacGGAgcagactggactggactgctgcagagtcactgactggactggactgctgcagtcagtgtctgtctgtctctggcaggagctcagagagagagagttggtcAGTCTGTCTATatcaccctctccctccttccctcatccttttgtattcttctcctctttttccTCTCAGCCCGTTGgtctttcttcctctctgctCCCCCTCTCCTACTCCTTCACCatcatcatcttcttcttcttcctcttcctcttgcCTGTGTCGGTCTCTCCTCCCACAGTGCCTTCTGTAGCACACTCCTCGGAGACCCCCTCTCCTTCTTCCACCATTTcgttctctctcctcctctttttcttcttctccttctcctcctgaGTGCAGGGGGGCACGGAcaggtgcatgctgggacaGGCGGAGTGCCGCAGGATGTCGGAGACAGAGACCGCAGCCTGCCTCACTCTGGAGTCCAGCTCACTGTCTGACTCACTGGAGCTGGGGGTGGGGCGTCGTGGTGTTCGGTGAGGGGGGGCCTCTGCAGACTGACCAGGCACTGAGGTGGAGAACAGCAGGAACcCATCCTCGCAGTCCAGTGCAGGGGCATGTGCGTGTATCCGTGTGTCCGACACCTCTGTGAGGACaCTGTCCAGCACGGATCCCAGTTTCTTTGCAACGTGAGCTCGGAATTCTGGGGTTGTCTGGAGTTCGTTCCCATCATGCTCGTGGTCACCGGTCCTCACACTGAAATAAGacacaagtgtgtgtgtcagtgtgtatttgtgtatgagagaatgtgtgttagtgtttgaaGGAGAAATTTACCGCCGGCTTGGTCTCTGTAGCGACACTCCAGCCCTCTGGTCACCGTCGCCCCTTTCTGGACAACACAGAGAACAGCAGCGGTCACAGGGATGCACTCACATTCATAAAGTTTAAGGAATGCCCCTTTGCGTGCAGGGTCTGGCTCTTGTTTTCTCAGTTCCTGCGCAGACGACCGCTCAGCAGATCCTATATGGACCCTCTAGAGGACCCTCtacaaccctgaggtgctggtggcgtgtcgtctgcacGGTGAAATAGGCTCTGcaggagggacggaacatctgctTGTTCAagaagcaggagctggacccaaagACGATCGCACGGAGGGGCATGATCCTAGTAAGAAATcacgtcaatctggagatccatcagAGGGCCTTGAAGAACTGGAAAATtaaagatctgggggagctcagaaGCCCATGAAGGGATGCCACCTCTGGGGTTGGATACTCC

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018572 True 3162 mRNA 0.55 13 14410503 14417254

Neighbor

gene id symbol gene type direction distance location
AMCG00018562 NA coding downstream 40230 14369084 ~ 14370273 (-)
AMCG00018559 NA coding downstream 51211 14332792 ~ 14359292 (-)
AMCG00018563 NA coding downstream 81886 14321331 ~ 14328617 (-)
AMCG00018561 grk3,LOC107689528,LOC107758628 coding downstream 94210 14293218 ~ 14316293 (-)
AMCG00018560 NA coding downstream 121508 14266095 ~ 14288995 (-)
AMCG00018573 acads coding upstream 16692 14433946 ~ 14437780 (-)
AMCG00018574 NA coding upstream 20750 14438004 ~ 14443900 (-)
AMCG00018571 gnaz,LOC107555529,LOC107686467,LOC107744122 coding upstream 33681 14450935 ~ 14460678 (-)
AMCG00018584 NA coding upstream 112748 14530002 ~ 14539282 (-)
AMCG00018587 drg1 coding upstream 174019 14591273 ~ 14596238 (-)
G117223 NA non-coding downstream 1554 14322085 ~ 14408949 (-)
G117227 NA non-coding downstream 8157 14357435 ~ 14402346 (-)
G117221 NA non-coding downstream 10948 14312258 ~ 14399555 (-)
G117234 NA non-coding downstream 42592 14366465 ~ 14367911 (-)
G117122 NA non-coding downstream 176879 14232796 ~ 14233624 (-)
G117245 NA non-coding upstream 111 14417365 ~ 14459293 (-)
G117253 NA non-coding upstream 59736 14476990 ~ 14477219 (-)
G117254 NA non-coding upstream 60841 14478095 ~ 14478937 (-)
G117293 NA non-coding upstream 160982 14578236 ~ 14588050 (-)
G117319 NA non-coding upstream 218150 14635404 ~ 14636339 (-)
AMCG00018555 LOC107689851 other downstream 147349 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 682633 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1153253 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 2119959 12287568 ~ 12290544 (-)
G116577 NA other downstream 2499167 11911014 ~ 11911336 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 86149 14503403 ~ 14520875 (-)
G117377 NA other upstream 318884 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1081408 15498662 ~ 15518315 (-)
G117784 NA other upstream 2591644 17008898 ~ 17009301 (-)
G117823 NA other upstream 2808836 17226090 ~ 17256271 (-)

Expression


Co-expression Network