AMCG00018573 (acads)


Basic Information

Item Value
gene id AMCG00018573
gene name acads
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14433946 ~ 14437780 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018573
GCAACGTCGGACTGTATTTCAGGATGCACAGATACACTCATATATTATATTGATTGGGTTCTCACAGCCATATCGCCACCGGTCTGCAGCGAAGATGGCGGCTCTTCTGTGCGCTCGGAAAGCGCTGGTGTCCTGGGCCCAGTGCGGACGGCGGTGTCTATCCCAGCTGGCCGAGCTGCCAGAGATGCATCAGATGCTGCGCCAAACATGCCGGGACTTCGCAGAGCGTGAGCTGGCGCCCATCGCCGCACAGCTGGACCGTGAGCACCGCTTCCCTGCCCAGCAGGTTCGAGAGCTGGGTGCTCTGGGGCTGCTGGCAGTGGAGACCCCTGAGGCTCTAGGGGGTGCTGGTCTGGACTACCTGGCATACGCCATCGCTGTGGAGGAGATCAGCAGGGGCTGCGCCTCCACCGGGGTCATCCTCAGCGTCAACAACTCTCTGTACTTGGGTCCGATCCTGAAGTTTGGCTCGGAGGAGCAGAAGCAGCAGTGGGTCACCCCCTTTACCACCGGGGAGCAAGTAGGCTGCTTCGCCCTGAGTGAGCCAGGTAATGGCAGCGATGCGGGCGCCGCGGCGACGGTGGCCAGGCGGGATGGGGAGGAATGGGTGCTGAACGGCACCAAGGCCTGGATCACCAACTGCTGGGATGCCTCTGCAGCCGTGGTGTTCGCCACCACTGACCGCTCACTCAGACACAAGgGTATCAGTGCCTTCCTGGTGCCAATGCCCCACCCCGGGGTATCTCTGGGCAAGAAGGAGGACAAGCTGGGCATCAGGGCCTCGTCCACCGCCAACCTCATCCTTGAGGACGTCCGCCTGCCGCCCCAGAGCATGCTGGGGCAACCCGGCATGGGCTTTAAGATTGCCATGcaAACCCTGGACAGTGGGCGTATTGGCATTGCAGCTCAGGCTCTGGGGATCGGTCAGGCAGCCCTGGACTGCGCTGCTGACTATGCCCAGAAGAGAGCCGCTATGCTGAGGGATTCTAGGAAACCCTACTCCAAGGAAGCCGCGATGGCAAAGCTGGCTGCGTCCGAGGCTGCCACCTTCATCTCTCACCAGGCAATCCAGGTGCTGGGGGGAATGGGTTACGTGACGGACATGCCTGCGGAGAGACACTATCGCGACGCACGCATCACAGAGATCTACGAGGGAACGAGCGAGATCCAGAGACTAGTTATAGCCAACCTGCTGCTGAAAGAGTACCAGGGATagagaggggaggagaagaGGGAAATGGAGGACAGAAATAATGGATAGagggagagtgaaagagaggagTTTCAGATTGGTTCCTATGTGCCTAAATTCAAACCTGTTCCATGTTGGAATTATTTTGGGGGACGAACAGGGTCTGGGGTCAAATCACCAACatacaaaactgtaaataaattaacattaataattgattaaaacaatcaatttcCTTCTTGATGAAACTCACCTCTACAGATTTagactgattttgttttattcccaaagcaaaataacaaGTTGCTTCTGGTACTGGGAACCTCCACTAGAGGGGGTGGCAGAGCCtcgaataaaaaaataaatccaaaataaatgaagttTTTAAAGGTGCCTGTCAGTTCAATACAGATCAGTACACACTACACCCTCCTTTTACCCACCTGCCAGTACCACAGTCATTTGTGTAACATGCTATAGTGGGGGCAGGTTGCTGCAcatatttctacatttttaaatgtctttgttttttgatttgttaagTGTGTGAAGATGAAATAAACTCTGAAGTTTGATTTTCACA

Function

symbol description
acads Predicted to enable butyryl-CoA dehydrogenase activity. Predicted to be involved in butyrate catabolic process. Human ortholog(s) of this gene implicated in short chain acyl-CoA dehydrogenase deficiency. Orthologous to human ACADS (acyl-CoA dehydrogenase short chain).

NR:

description
acyl-coenzyme A dehydrogenase C-2 to C-3 short chain, partial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00248 ACADS, bcd; butyryl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018573 True 1775 mRNA 0.54 10 14433946 14437780

Neighbor

gene id symbol gene type direction distance location
AMCG00018572 NA coding downstream 16692 14410503 ~ 14417254 (-)
AMCG00018562 NA coding downstream 63673 14369084 ~ 14370273 (-)
AMCG00018559 NA coding downstream 74654 14332792 ~ 14359292 (-)
AMCG00018563 NA coding downstream 105329 14321331 ~ 14328617 (-)
AMCG00018561 grk3,LOC107689528,LOC107758628 coding downstream 117653 14293218 ~ 14316293 (-)
AMCG00018574 NA coding upstream 224 14438004 ~ 14443900 (-)
AMCG00018571 gnaz,LOC107555529,LOC107686467,LOC107744122 coding upstream 13155 14450935 ~ 14460678 (-)
AMCG00018584 NA coding upstream 92222 14530002 ~ 14539282 (-)
AMCG00018587 drg1 coding upstream 153493 14591273 ~ 14596238 (-)
AMCG00018592 NA coding upstream 209312 14647092 ~ 14648105 (-)
G117223 NA non-coding downstream 24997 14322085 ~ 14408949 (-)
G117227 NA non-coding downstream 31600 14357435 ~ 14402346 (-)
G117221 NA non-coding downstream 34391 14312258 ~ 14399555 (-)
G117234 NA non-coding downstream 66035 14366465 ~ 14367911 (-)
G117122 NA non-coding downstream 200322 14232796 ~ 14233624 (-)
G117253 NA non-coding upstream 39210 14476990 ~ 14477219 (-)
G117254 NA non-coding upstream 40315 14478095 ~ 14478937 (-)
G117293 NA non-coding upstream 140456 14578236 ~ 14588050 (-)
G117319 NA non-coding upstream 197624 14635404 ~ 14636339 (-)
G117338 NA non-coding upstream 265860 14703640 ~ 14704458 (-)
AMCG00018555 LOC107689851 other downstream 170792 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 706076 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1176696 13253085 ~ 13257250 (-)
AMCG00018490 NA other downstream 2143402 12287568 ~ 12290544 (-)
G116577 NA other downstream 2522610 11911014 ~ 11911336 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other upstream 65623 14503403 ~ 14520875 (-)
G117377 NA other upstream 298358 14736138 ~ 14738312 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 1060882 15498662 ~ 15518315 (-)
G117784 NA other upstream 2571118 17008898 ~ 17009301 (-)
G117823 NA other upstream 2788310 17226090 ~ 17256271 (-)

Expression


Co-expression Network