AMCG00018575


Basic Information

Item Value
gene id AMCG00018575
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14519852 ~ 14529437 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018575
GGAGTCTCGGGCTGCGCTGCCCGCGGACGGAGCCTCGCAGAGACGGAGCCCAAGAGCTGCAAACAGGGACAAATAACCCAGCAGCACCGGGGCGGCCCAGCCCCGTGTGTCCAGGTCATCATGCTGTCCACAGTCCCCGCTGATCTGGGAGGTAGTCAGCAGCTGCCCCTGTCTGTCTCGAACCCCCACCCTCTGCCCCAGCTCTCTCCAGCGCTTTACCGGGAGCGGCCCGGGCAGCGAGGTGGGGGCAGGCGGGGCTCTGACGGAGGGAAGGAGGGGGCTTGCAGAgctgagaggagagagcagcCTGCTGTAGATGATGTCCGGGACACAGGAGGCCCTGTACTGCAGGACCCCGCTCTGGACTCAGTGATCAGCTTGGCTGCCTGTGTGGACAGTGCCTGTGAGGACAGAGGGAGCACAGCAGGACAGGCGGACGGAGAGACGCTCCCAAGCAGAAGGGAGTTCGGGGAGAAGCAGCCCTGTGCAGAGGGTGAGGGTGGTACGGGGGCGTCACACGGCCAGACACTCCGAGACTCTCCTGAAGATATCCTGGAACGATGGGAcacatctcctcctcctcctcctcctcctcctcttccacctCCTGCCTCTGCATCTCGCTCTGGCGGCGAAGCTGCCGAGGTGCAAGCCACGGGAGGGCCGGGTCCGGTTCTGGGAGCTCTGGAGCTTTGTTTGGCTTCCCACCAGGGGGAGCTGCGGCGGCTGTTGGCGGGGTCACTGGGGTTGCTGGGCAGGCGACTGGACAGGATGGAGCGCAGGCTGGACCGGCTGTGTGTGCAGGGAGAGGCAAATGCTCAGGGACTGACCACACTGACAACGCAGCTGGCTGCACAGCTGACCAGGAGCTCAGACACTCGCACAGCAGCCCCCCAGCCTGGTGTCCTGTGTCCTGATGTGGCTGGACAGAGGACAGAGGCCGCCAGCCTTTCACActcagagcagcagcagcagcagcagcagcagcaggaggaggaggaggaggaggaggcggcggcggcggcccaACCTGCCGAGTCACCCTCTTCGTCTTTGTGGCAACCGTCGTCATGGAGCCCCTGTCTCCGTAGCAACCAGCCTGCTGCGGCTGCCGCAGATGGAGCCGTGTCCGTCTGCGGAAGTGCCCCGTCCCTGGAGGATGCCACTGCTACGGACCGGGGGGCTAGCCATATGGATACCATAGAGCCTGACACACTAGAGGAGACTGGAAACTTGCCCAGCCGTCCTGCCCCCGCTCTTGAACTCGTCTCAGTGTTTGGTTTTCCGCCTGGGGAGCAGGGGGCCAAGGATAGCCAGCTCTCGATCCTGGGGGAGGTTGCGGAACCACATGCCCCAGCCCCCAGCCTCACCCCCAGGACAGGTGCCACCCTCCGTTGCCAGACCTGCTCCCCTGTGTGGGACTGTGAGCAGAAAGAGCCTCCCGGACCAGAGCCCCCCCTGATCTGTGGTGCTGGAGATTCTGGTGGCAGGGGGGAGCAGGTTGGCGGCGTCTGTGTGGGACGACTCCCCCAGGAGGATGCCACCCCCCCTGCTTGCACTGACTTCTCTCCTGCGTGTCCCTCCTCTCATGAAGACGACCCCCAACACCCTCTCCGCCCAGACCTTCGCGGGGCAGAAGATGGCAGCCTCGCTAGGACAACGTCTCCgcctctgtccctgtctctctctccgctcTGCAGCTCAGACTGTGTACCCCCCAGAGAAAGGAAGGACCCTCACATGGCACCCCCTCACTGCCCAGAGATAGCTGGACCCATGGCGGGTCCCTTCCCCGCAGGAACAACAGCTGCTGGGGAGGTCCAATGCCTTGGTGAAACGTCGGGTCAGAGCCCTGGGCGACCGGGAGAGCAGCTGCCCATCACTGTTGTACTGGAACAGCAGGACGCAGAGATGCCagctgatggagagagagaaggaggagaggaagaggaggagggccGAGAGGTTGCAGGCGGGTGCGTTCCGGagaattcccagaatgcacagCAAATGGAAAACATGGATTTTTCACAAAAGACTTCTGTAACAGACAGCTGGCatctggaggaggaggaggagcagcagagtgggaggggggcACATAGGGCAGTGGAGGAGTGTGGGGAGGAGGATGTGGGGTTTAGGCAGTCGCTTGAGGCTCCAGTTAATCCCAGAGATCTGTGTGACCTGGACAGCCCTGTCCTGCCCTCAGTTCCTGATGCCTCTGCCGACTCCGGAGTGACCTTGGAGGCAGGTCCCACAGGACAAGGGCCGGCAATGTCCCTTGTCCAGAGCTGTAGCACCGGGACTCACAGTTCTGGTAGTGATACGGACCCCTGGGGCATGGCTGTGAAGGGACTGGAGGGGCCAGAATCAGAGCCACCAGATAAGGACATAGGGTCACTGGGGAGGCTGGTCATGGTCGGACTGCAGTTGGCGGAGGGCGAGGAGAGGAGCAGTTCAGCGGtgcctgtggagagagaggagggggtcCCGGACAGGTGCTTGGGGCTGGACAGCGGTGCTCTCCACTCCTGCACCAATGTAGTGCCTTCCTCAGATAGCAGCATCCACAGCACTGAGTCTGCATCTCCCGGCTCTGACCAGCTTGGGAGCGATTGGCTGCAGTCAGGGGGCGTTGCCCAGAACGCCGGTCACACCGGAGAGCTAACCAGAGGACCCAGCTGCTGCCAGAGTCCCACCCCCAGCCCCCCTCAATTGGAGCCCCCTCCTGCTTGTGCTCCctcttttccctcctcctccactcctTCTTCCCCTTCCTCACTAGATCTGGACCCTTGTGTCCCCCCCTCCTCGTTCCCCATCCCGGTCGGAGTTAAGGGGGTATTTGGGAGGCCCCCCAGGAAGAAGATGCTCATGGAGTCCCGGCAGCAGCCCATGCGCAAgtgcaggggggtggggggtgcccTGCAGTCTCTCCCAGAGCTGCGGTCAGTAAGGGAGGCTACCGCTGTCCTGTTTCTCGTTCCCGACGACTCGCCCTGCTCTCCAGGCTGCTCTCTGACCTCCCACCAACCAGCCTGGCCTCTAGAGTCCTGCAACCCGTGCATGGGGGTCGGTACCCGTTCTTCCTGGGCCCAGACAGACTGCACGCCCCCCAGCCTGAGAAACGGTCTCACAAAATCCCTCCCTTACCCCCCCACCCGCGACCAGTCCTGCCTCTCCCACCTGCTGCAGCAGCTCTCCGAGGTCGCCAGCTCCCTGGtgcccctcccctcctctcctcccgtCCCCTCTTCCTCCAACCAGGTGGTCATGCGCAAGCGGCGTGGTGCCCTGGGGACCTCCTCAGCCCTGCTGTTCAGCCTGGCAGCCAGACTGAAGCCGCTCAGGGCCTGGGGTCTGCGGGGGGGTGGTGGCAGCACTCGCTCACTCTCTGGGAGCAAATGCTGGCCGCCCAAATGGACCACCcacccctcctcttcctcctctcacTCCTCTTCATCCTGGCTGGGCCTGCAAACTTTCCTGGCTCTGTCCTCACCCTGCTGGTACCGCCTTTTGACCCGACACCGTGGCCTAGGCAGCACATGTCAGGAGGCGCACAGACTGTCTGGAGCCCTGTCTACCCCGCTAGCCCTGCCTCCACCCCCCCAGGACAGAGACAACCTGCTTCCTTCCTTGCACTATGCGTTGGCCCCCATTTTAGCATCCTGGGCTGCCCAGTGTCCCCCCCGGCACTGCCTGGCGGACAGCACAGTCATCTGCAGCATGGAGACTGAccacagCTACGCTCGGCAGCCCAGCCAGGTAACCCGGCAGGCGGGGGCAGAGTCAGCAGCCAGTCGTGTGACGGTGCTGGACTGTGTCTCATCCCTGTCTCCATGCGTGCTGTCTGTCCCGCCCTCGCCCCTGCTGTCTCCCCTCCACCTTGTGGAGCCCTTGCCGCtgccatcctcctcctcctcctcctcccttgccCCCCCCAGCCCGGAGAGACAGGGTGCGGAGGGGTGGGGCACCGAGCAGAACACAGTCGATCTATCCGCGCTACCAGCTCCCCCCCATGGGAATGCCACCGAGAAATACCCCCCTACACACAGCCATGCCTCCAGCAGAGAGggcTGTGTGTATGAGAAGAGGCAGGGGCTGCGCTCCAAGCGTGTGTCCCAGATCCGCATCCGGAAAACCGTCCCCAAACAGGACAACAACCTGACCCCCATGGGGCTTCCGAGACCAAAGAGatTAAAGAAGAAGGAGTTCAGTCTGGAGGAGATCTACACCAATAAAAACTATCGTTCCCCCCCGTCCAACAGCAGTCTGGAGACCATCTTTGAGGAGCCCAGGGAGAGGAATGGGTCGCTGCTCTGCATCAGCCAGCAGAAGAGGAAGCGTGTGCTGGATTTCCCGGACTTCACATTGCCGCGGAAACGGCGAGCACGGGCGGGCAGTGGGAGcaacgggggggggggcaccGGCAATAGCAGTGGGACAGGGAGCAGGGTGCGGGGGGGACGGGGCCGGGGTCGCCGGGCAAGGGAGTCCGACGCGGAGCTGGACGTGCGATTGGTCGAGAGGCTGAGTGAGCTGGAGGACTTCTTTGCTCGCAATGGGCTGGAGGTGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018575 True 4587 mRNA 0.64 11 14519852 14529437

Neighbor

gene id symbol gene type direction distance location
AMCG00018576 slc5a1,LOC107713298,LOC106563210,LOC105913283,LOC105014972 coding upstream 833 14511238 ~ 14519019 (+)
AMCG00018578 LOC104951472,LOC102789619,LOC107752382,LOC102207611 coding upstream 15793 14498599 ~ 14504059 (+)
AMCG00018579 NA coding upstream 24051 14479080 ~ 14495801 (+)
AMCG00018580 NA coding upstream 41519 14476918 ~ 14478333 (+)
AMCG00018566 NA coding upstream 73771 14445220 ~ 14446081 (+)
AMCG00018583 NA coding downstream 12893 14542330 ~ 14547480 (+)
AMCG00018582 pisd,LOC107663775 coding downstream 22657 14552094 ~ 14554070 (+)
AMCG00018581 NA coding downstream 24652 14554089 ~ 14557800 (+)
AMCG00018577 NA coding downstream 44823 14574260 ~ 14588028 (+)
AMCG00018585 NA coding downstream 69825 14599262 ~ 14614445 (+)
G117197 NA non-coding upstream 80761 14437992 ~ 14439091 (+)
G117131 NA non-coding upstream 274534 14244708 ~ 14245318 (+)
G117130 NA non-coding upstream 275649 14242864 ~ 14244203 (+)
G116976 NA non-coding upstream 672760 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 679881 13839716 ~ 13839971 (+)
G117209 NA non-coding downstream 4526 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 206659 14736096 ~ 14738327 (+)
G117381 NA non-coding downstream 254069 14783506 ~ 14784333 (+)
G117382 NA non-coding downstream 256588 14786025 ~ 14786487 (+)
G117387 NA non-coding downstream 263359 14792796 ~ 14793804 (+)
AMCG00018567 NA other upstream 107573 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 120313 14330841 ~ 14399539 (+)
G117178 NA other upstream 172111 14345090 ~ 14347741 (+)
AMCG00018551 NA other upstream 277135 14239242 ~ 14242717 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 328775 14189003 ~ 14191077 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 244678 14774115 ~ 14777110 (+)
G117383 NA other downstream 257186 14786623 ~ 14788133 (+)
AMCG00018602 LOC102789415 other downstream 425127 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2538775 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3451703 17981140 ~ 17983017 (+)

Expression


Co-expression Network