AMCG00018576 (slc5a1,LOC107713298,LOC106563210,LOC105913283,LOC105014972)


Basic Information

Item Value
gene id AMCG00018576
gene name slc5a1,LOC107713298,LOC106563210,LOC105913283,LOC105014972
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14511238 ~ 14519019 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018576
TGCAGAGTGCAGGTCGGAGAGCGTGAGTAAGAACGAGACTTTGACACTCAGACTTACACTTTGAGACTCTCTCCGTCACACACAGATACTCTCAGACACTCAGAGACACACTCTCCGCCAGCCACGCGCTCCCGCGGACCTGTCCAGTTTCTTTTATCGCTGACCAGGCAGAGCCATGAACCTTCAGGTCACCACAGCCGTGCCGCAGGCCGACAATGGCACGCTGGCCATCAACAACCCCGCGGACATCTCTGTCATCGTTATCTACTTTATCGTGGTCCTGGTAGTGGGGCTGTGGGCGATGCTCAGCACCAGCCGCGGCACTGTGGGGGGATTCTTCTTGGCGGGGCGCAGCATGGTGTGGTGGCCGATCGGCGCATCCCTGTTCGCCAGCAACATCGGCAGCGGGCACTTCGTGGGGCTGGCGGGCACGGGGGCAGCGGCAGGCATTGCCATTGGGGGCTTTGAGTGGAACGCTCTGGTCATGGTGATTATCCTGGGCTGGTTGTTCGTGCCAATTTACATCAAGGCCgggGTGGTGACGATGCCGGAGTACCTGAAGAGGAGGTTCGGGGGGCAGCGCATCCGAATCTATCTGTCTGTGCTCTCACTGATGCTCTACATCTTCACCAAGATCTCGgcggACATGTTTTCTGGGGCGATCTTTATCCAACAGGCTCTGGGTCTGGACATTTACGTGGCGGTGGTGCTCCTGCTCATGATCACAGCTCTGTACACCGTGACtgGGGGCTTGGCTGCAGTGATTTACACCGACACACTGCAGACGATCATCATGGTGGTCGGCTCCTTCATCCTTATGGGCTTCGGCTTTAACGCAGTGGGGGGGTACGATGCGTTTGTGGAGAAATACATGCAGGCCAAGCCCTCCGTAGTCACCTGGCCTGGCCTGAATATCAGTGCCCGCTGCTACACCCCCAGCCCCGACTCCTTCCACATCTTCCGAGACCCGCTGACAGGAGACATGCCCTGGCCCGGCCTGGTGTTCGGACTGACCATCCTGGGCATCTGGTACTGGTGCACTGACCAGgtgatAGTGCAGCGCTGTCTCTCTGCCAAGAACCTGTCACATGTGAAAGCGGGGTGCATCCTGTGTGGCTACCTCAAGCTGCTGCCAATGTTCCTCATGGTGTTCCCTGGCATGATGAGCCGGATCCTCTACacagACGTGGTGGCCTGCGTCGTTCCTGAGCTGTGCACTAAGTACTGCGGGACATCGGTGGGCTGCAGTAACGTGGCATACCCCCGGATGGTCGTCGATCTGATGCCCAACGggctGCGGGGGTTGATGCTCTCGGTGATGCTGGCGTCTCTGATGAGCTCCCTGACCTCCATCTTCAACAGCGCCAGCACTCTGTTCACCATGGACATCTACACCAAGATTCGGAGCCAGGCCTCGGAGAAGGAACTCATGATTGCCGGGCGgGTGTTCATCCTGGCTCTGATTGGGGTCAGTATTGCCTGGATCCCCATTATACAGTCATCCAAAAGTGGCCAGCTGTTCGACTACATCCAGTCCATCACCAGCTATCTGGGCCCCCCCATCACCGCCGTCTTCCTGCTGGGCATCTTCTGCAAGAGGGTCAACGAGCAGGGGGCATTCTACGGGCTGCTGGTGGGTCTGTTTATCGGCCTGGCCAGGATGATTGCAGAGTTTGCTTACGGGACGGGCAGCTGTGTCACCCCCAGCAACTGTCCTAAAATCATCTGTGGTGTCCACTACCTCTACTTTGCACTTATCCTGTTTGGCATCTCCTGCATCCTGGTGCTGGGCATCTCCCTGGCCACCAAGCCCATTGACGACAAGCATCTGTACCGGCTATGCTGGAGTCTGAGGAACAACACAGAGGAGAGGGTAGATCTGGAGGTGGATGACtggacaaacacacaagacCAGGAGAGCACTGGGGTGGAGGAGCCGCATGAGGAGCCGGGCTGCTGCAGGAAGGCCATTAATTGGTTCTGCGGGTTCGATCAGGGCTCTGCCCCCAAGCTGAGCGAGGAGGAGCAGGCGGAGCTGCAGAAGAAGCTGACTGACACCTCAGAGCACCCGCTGTGGCGCAATGTTGTCAACGCCAATGGCATCGTGCTGCTCACCGTGGCTGTCTTCTTCCATGGGTTCTACGCCTAGATCCTCtgactgtaacacactgtactgtactgtcatGCAGCTGTTGAATGTAATTCTGACTAAAGCGGGAAACAGAGGCGCTGAAATGTCACACAGCAGCTTCATACGACCTGATTCAAttaaccctgctctggtaccattggggtggggtcacagagaccccatggtaccacagcagggttaaaaTCCTCAGCTTACACTGGGCTGATCCACAACACTGCTCTCAGACACTCTGCTGTGccctgcagtgtagtgtagtgtagagcaatgtgtagagcagtgcagtgtagtgtagtacaggGTAGTAATGTGTaatgtagtacagtgtagtgaTGTGTAGTATTTTAACTGTTAAACTGATTTCTTGGAAGGgtgtattgttttcataataataataataataataataataataataataataataataataataataatactgtcgacaggagtttgtgtgtgtgtgtgtccagcatTCTTCAGTCAAAACACACTGGCCAGTACAGACGAATCAAGGTCTAGTAAACAGCAGCTTCCTCATTCCTGCAATGATTTCCTCTGAAGTCTGTAATCAGTAAATATACCCAAATGAGTCACTGTGGTTTCTTAGACAAATGTTtatgtgtgagtgagtttgTGAATatatcagtgtgagtgtgtgtgtgtgagtgcgtgtgtgagtgtgagtttgtatgtgtgtgtgtgtgtatgtgtgtgtatgggtaaatgtgtgtatatagggCATGCCACGCTCTCCTCAGGGCAAGAGACCCCACAGCCTTTGTTTCAGaggtcttttgtttttatggaaaACTTGTCCACAAACTTCTTTGTAAGCAAGGACTAAGCCCAacgattatttttttattcaaacctGGTTCCCAACCTGCCTGCAAGAGTGGACTTCTCCTGTTCAATCTATTTTCCCTGTTCTCTGGTGTAGTGCCCTATTGTACTGTGCTGTCTGTCACTGCAGCCCCTTGTTGGTACAATTCTCTATTGTAAAAACTATTCCACTGTACTGGACTGGCAGGCGATGTTGTAACAGCACTGTGCTATTGTATTGCACTGTTCTTAGCCCCTGTTGTAACAGCACATgatattagtattttatttttgaattaatcaaagtacaatttgttgatttcttaattgtgaattaaattactttaactAGTCTGCAAGGCCATCGAGGGCCTCTATTCTGTAAACACCTTTttcatattatcattattatttac

Function

symbol description
slc5a1 Predicted to enable glucose:sodium symporter activity. Predicted to be involved in sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb; liver; pronephric duct; pronephric proximal convoluted tubule; and pronephric proximal straight tubule. Orthologous to human SLC5A1 (solute carrier family 5 member 1).

NR:

description
PREDICTED: sodium/glucose cotransporter 1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14384 SLC5A4, SGLT3; solute carrier family 5 (low affinity sodium-glucose cotransporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018576 True 3393 mRNA 0.51 15 14511238 14519019

Neighbor

gene id symbol gene type direction distance location
AMCG00018578 LOC104951472,LOC102789619,LOC107752382,LOC102207611 coding upstream 7179 14498599 ~ 14504059 (+)
AMCG00018579 NA coding upstream 15437 14479080 ~ 14495801 (+)
AMCG00018580 NA coding upstream 32905 14476918 ~ 14478333 (+)
AMCG00018566 NA coding upstream 65157 14445220 ~ 14446081 (+)
AMCG00018565 sppl3 coding upstream 79612 14420275 ~ 14431626 (+)
AMCG00018575 NA coding downstream 833 14519852 ~ 14529437 (+)
AMCG00018583 NA coding downstream 23311 14542330 ~ 14547480 (+)
AMCG00018582 pisd,LOC107663775 coding downstream 33075 14552094 ~ 14554070 (+)
AMCG00018581 NA coding downstream 35070 14554089 ~ 14557800 (+)
AMCG00018577 NA coding downstream 55241 14574260 ~ 14588028 (+)
G117197 NA non-coding upstream 72147 14437992 ~ 14439091 (+)
G117131 NA non-coding upstream 265920 14244708 ~ 14245318 (+)
G117130 NA non-coding upstream 267035 14242864 ~ 14244203 (+)
G116976 NA non-coding upstream 664146 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 671267 13839716 ~ 13839971 (+)
G117209 NA non-coding downstream 14944 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 217077 14736096 ~ 14738327 (+)
G117381 NA non-coding downstream 264487 14783506 ~ 14784333 (+)
G117382 NA non-coding downstream 267006 14786025 ~ 14786487 (+)
G117387 NA non-coding downstream 273777 14792796 ~ 14793804 (+)
AMCG00018567 NA other upstream 98959 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 111699 14330841 ~ 14399539 (+)
G117178 NA other upstream 163497 14345090 ~ 14347741 (+)
AMCG00018551 NA other upstream 268521 14239242 ~ 14242717 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 320161 14189003 ~ 14191077 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 255096 14774115 ~ 14777110 (+)
G117383 NA other downstream 267604 14786623 ~ 14788133 (+)
AMCG00018602 LOC102789415 other downstream 435545 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2549193 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3462121 17981140 ~ 17983017 (+)

Expression


Co-expression Network