AMCG00018578 (LOC104951472,LOC102789619,LOC107752382,LOC102207611)


Basic Information

Item Value
gene id AMCG00018578
gene name LOC104951472,LOC102789619,LOC107752382,LOC102207611
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14498599 ~ 14504059 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018578
ATGGTGGACAGGGAGCAGCTTGTGCAGAGAGCCCGGCTGGCCGAGCAGGCGGAGCGCTACGACGACATGGCTTCCGCGATGAAACTGAAGACCTCGGCGGACGGCAACGAGAAGAAGCTGGAGATGGTGCGCGCGTACCGGGAGAAGATCGAGAAAGAGCTGGAGACGGTGTGCAGCGACGTCCTCTCCCTGCTGGACAAGTTCCTCATCAAGAACTGCAACGACTCGCAGTTCGAAAGCAAGGTGTTCTACCTGAAGATGAAGGGCGATTACTACCGGTACCTGGCGGAGGTGGCCACGGGGGAGAAGCGGGCGGCTGTGGTGGAGTCTTCCGAGGGCTCCTACAAGGAGGCCTTCGAGATCAGCAAGGAGCACATGCAGCCCACCCACCCCATCCGCCTGGGCCTGGCCCTCAACTTCTCCGTCTTCTACTACGAGATCCAGAACGCGCCTGAGCAGGCCTGCCACCTGGCCAAGCAAGCGTTCGACGACGCCATCGCCGAGCTGGACACTCTGAACGAGGACTCCTACAAGGACTCCACCCTCATCATGCAGCTGCTGCGAGATAATCTGACCCTGTGGACCAGCGACCAGCAGGATGAGGAGGCGGGCGAGGCCAACAactga

Function

NR:

description
PREDICTED: 14-3-3 protein gamma-1-like

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007420 brain development biological_process
GO:0005737 cytoplasm cellular_component
GO:0019904 protein domain specific binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018578 True 627 mRNA 0.61 2 14498599 14504059

Neighbor

gene id symbol gene type direction distance location
AMCG00018579 NA coding upstream 2798 14479080 ~ 14495801 (+)
AMCG00018580 NA coding upstream 20266 14476918 ~ 14478333 (+)
AMCG00018566 NA coding upstream 52518 14445220 ~ 14446081 (+)
AMCG00018565 sppl3 coding upstream 66973 14420275 ~ 14431626 (+)
AMCG00018569 unc119.1,unc119b,LOC107712459,LOC107753165,LOC107550938,LOC107687994 coding upstream 91621 14404406 ~ 14406978 (+)
AMCG00018576 slc5a1,LOC107713298,LOC106563210,LOC105913283,LOC105014972 coding downstream 7179 14511238 ~ 14519019 (+)
AMCG00018575 NA coding downstream 15793 14519852 ~ 14529437 (+)
AMCG00018583 NA coding downstream 38271 14542330 ~ 14547480 (+)
AMCG00018582 pisd,LOC107663775 coding downstream 48035 14552094 ~ 14554070 (+)
AMCG00018581 NA coding downstream 50030 14554089 ~ 14557800 (+)
G117197 NA non-coding upstream 59508 14437992 ~ 14439091 (+)
G117131 NA non-coding upstream 253281 14244708 ~ 14245318 (+)
G117130 NA non-coding upstream 254396 14242864 ~ 14244203 (+)
G116976 NA non-coding upstream 651507 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 658628 13839716 ~ 13839971 (+)
G117209 NA non-coding downstream 29904 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 232037 14736096 ~ 14738327 (+)
G117381 NA non-coding downstream 279447 14783506 ~ 14784333 (+)
G117382 NA non-coding downstream 281966 14786025 ~ 14786487 (+)
G117387 NA non-coding downstream 288737 14792796 ~ 14793804 (+)
AMCG00018567 NA other upstream 86320 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 99060 14330841 ~ 14399539 (+)
G117178 NA other upstream 150858 14345090 ~ 14347741 (+)
AMCG00018551 NA other upstream 255882 14239242 ~ 14242717 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 307522 14189003 ~ 14191077 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 270056 14774115 ~ 14777110 (+)
G117383 NA other downstream 282564 14786623 ~ 14788133 (+)
AMCG00018602 LOC102789415 other downstream 450505 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2564153 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3477081 17981140 ~ 17983017 (+)

Expression


Co-expression Network