AMCG00018580


Basic Information

Item Value
gene id AMCG00018580
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14476918 ~ 14478333 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018580
TATAacctgcatctctctctccctctccccccgtCTCTCCTCCCACCCTCCTCCTCGCCCCTCTCTCGCCCGCCAGGTGCGTTGGGGGTGCTGGAGGCGGGACTAGTGCCCAGGCTGGTGCTGAGGCTCTCCAAGGAGGGGGAGGCGGTGCAGGAGCTGATCCTGACCACACTGGGCTCCTGCCTTCGGGTGGACGCGCTGCCTGCTCTGGCCAGCGATGGCGTTTCGGCCTTGAGGGTGTCCCTCATCCACCCCTCCCCCCGCGTCCGCGCACCCGCTGCCCGCGCTCTCGTCGCTATCAGTGTTCCTCTGGAGGGGAAGGTGAAGTTGTGTGAGGAGGGGGTGGTCCCTGAGCTGGTGCGTCTCCTTGGTGACGACAAtgcagaggtcagaggtcatgcTGCTGCAGCTCTCATGAATACGGCCGTCACCACACAGGGTAAGTTCCTGGCCCTGGAGGCCGGTGCAGTACCAGCCCTGTTGGTGCTGGCTCAGTGTCCAGGGGCTGTGGAGAGCTGTAATGCCCTGCGCTGCCTGACATGCCTGGCAGAGGCCCCACCCGGCCGCGCCCAACTGCTCCCTTACGTGCCCCTGCTGCAGCAGCGCCTCTCCCACCCCAGCGACATCGTCCGCCAAGCCGCCCTCACCGCCATCCAGGTCATTACCTGGACACCCTGA

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0043226 organelle cellular_component

KEGG:

id description
ko03030 DNA replication

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018580 True 678 mRNA 0.66 3 14476918 14478333

Neighbor

gene id symbol gene type direction distance location
AMCG00018566 NA coding upstream 30837 14445220 ~ 14446081 (+)
AMCG00018565 sppl3 coding upstream 45292 14420275 ~ 14431626 (+)
AMCG00018569 unc119.1,unc119b,LOC107712459,LOC107753165,LOC107550938,LOC107687994 coding upstream 69940 14404406 ~ 14406978 (+)
AMCG00018570 NA coding upstream 83074 14392309 ~ 14393844 (+)
AMCG00018568 NA coding upstream 87572 14389026 ~ 14389346 (+)
AMCG00018579 NA coding downstream 747 14479080 ~ 14495801 (+)
AMCG00018578 LOC104951472,LOC102789619,LOC107752382,LOC102207611 coding downstream 20266 14498599 ~ 14504059 (+)
AMCG00018576 slc5a1,LOC107713298,LOC106563210,LOC105913283,LOC105014972 coding downstream 32905 14511238 ~ 14519019 (+)
AMCG00018575 NA coding downstream 41519 14519852 ~ 14529437 (+)
AMCG00018583 NA coding downstream 63997 14542330 ~ 14547480 (+)
G117197 NA non-coding upstream 37827 14437992 ~ 14439091 (+)
G117131 NA non-coding upstream 231600 14244708 ~ 14245318 (+)
G117130 NA non-coding upstream 232715 14242864 ~ 14244203 (+)
G116976 NA non-coding upstream 629826 13846890 ~ 13847092 (+)
G116975 NA non-coding upstream 636947 13839716 ~ 13839971 (+)
G117209 NA non-coding downstream 55630 14533963 ~ 14534200 (+)
G117353 NA non-coding downstream 257763 14736096 ~ 14738327 (+)
G117381 NA non-coding downstream 305173 14783506 ~ 14784333 (+)
G117382 NA non-coding downstream 307692 14786025 ~ 14786487 (+)
G117387 NA non-coding downstream 314463 14792796 ~ 14793804 (+)
AMCG00018567 NA other upstream 64639 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 77379 14330841 ~ 14399539 (+)
G117178 NA other upstream 129177 14345090 ~ 14347741 (+)
AMCG00018551 NA other upstream 234201 14239242 ~ 14242717 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 285841 14189003 ~ 14191077 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 295782 14774115 ~ 14777110 (+)
G117383 NA other downstream 308290 14786623 ~ 14788133 (+)
AMCG00018602 LOC102789415 other downstream 476231 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2589879 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3502807 17981140 ~ 17983017 (+)

Expression


Co-expression Network