AMCG00018588 (bicdl1)


Basic Information

Item Value
gene id AMCG00018588
gene name bicdl1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14707571 ~ 14731664 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018588
ATGTCAGCTTTCTGCCTGGATCTGCTCTCCTCCACTGCCGCTATTTCAGCACCTTCCGAGCTGGACAGCGACTGCACTGAACACCCCCAGGAGCACGGCCTGAAACCGGCGGACTCGGGGGGCTTCAGGCACGACTTGGCCGGCCGCTCGCTGTTGTACCCCGGGCCCGGAGGCTTGGGtctggctctggaggaagagcTGGACATGCTGGCGGGGGAGCGAGAGCATGGCGCCGACCTGGCCGGCATGGAGGCGCCTCTGCACGGGCAGGACCCGGACTTGCTGTCACTGATCCGGCAGAAGGAGAAGGATCTGGTGCTGGCGGCTCGGCTTGGCAAAGCGTTGCTCGAACGGAACCAGGACTTGAGCAAGCAATATGAGAACATGCACAGGGATCTCAGCGAGAAACTGGAGCACCTGGAGCAGGAGAAACACGAGCTGCGGCGGCGCCTGGAGAGCCGTGAGGGGGAGTGGGAGGGGCGCGTGGCAGAGCTGGAGTCCGATGTGCGGCAGCTACAGGGGGAGCTGGAGCGGCAGCAGGCCCAGCTACGCGACGCcgatcgagagaagagccgagCAGTGCGGGAGCTGTCCGAGCAGAACCAGCGCCTCCTGGAGCAGCTCAGTCGGGCTGCAGAGGTGGAGAGGCAGTTGTCCATCCAGGTGTACTCTCTCAGGGATGAGTTTCGGGAGAAGAGTGTATCCACCAATCAGCACATGTCACGGCTAGAGAGCCTGCAGGCCGAGCTCGCCTGGTACGGGCAGACGCCGACTGGAGACAGCGGGCCGCCCCTCCTCTCTCCCGCTATCAAGATGCTGTCCGAGAGAAAGAGGCAGCTGGAGCGCCGCGCCTGCGCCGTGGCGGAGGAGAACGAGCTGCTGCAGGGCGCCGCGGACGAGCTGCGGGAGCGCGCGCGGCTGCTCGAGCGCCGGTGTCACGACAAGGACGTGCAGCTGCGGCAGAGTCAGCTGGAGCTGCAGGAGGTACGCGTGTCTCACCGGCAGCTGAGCGCGCGGATAGAGGAGCTGCACGAAGAGCGCAGCCTGCACGGGTTGGGCGCAGACCACGTGTCCCTGCTGTCTGAGATCGAGCAGAGCATGgagcaggaggagctggagcaggagagagagcagACGTCCTCGGCGAAGGACATCCCCACAGGCAGCCTGCACACCGCGCTGCACGAGCTGCGCAGACTCACGCAGAACCTGCTGGACGGCAACGAGTCTACGggctCTCGGCGCAGTGACGAGGAGGCCCTGGAAGAGCAGGTGCGGAAACTGAGTGAAGAGATGAGGGAGCAGAGAGAGCTGCTGGAGGCTGAGCAGAGCAGGATTCATGCAAGCCAAGAGGAGGCACTGCAGCTGCACAACCAGGTGACACTGCTGTCAGTGGAGATGGCCGCAGTGAAGGAGGACAGGGAGCGGCTGAAGGCCATGTCAGAGGTGCAGGAGCCCAGCGAGCAGCTGCAGAACGCCATTCGAGACAGAGACGATGCCATCGCCAAGAAGAATGCAGTGGAGATGGAGCTGGCCAAGTGCAAAATTGACATCATGTCTCTGAACAGCCAGCTGCTGGACGCCATCCAACAGAAACTGAACCTCTCGCAGCAACTCGAGGCgtggcagGATGACATGCACAGAGTGATCGATCAGCAGCTGATGGACAAACACCAGGAGGAATGTCGCGAGCCACCATACTCGTTCTCGGGGGGGGCGGCACGACGCAGCCGCCCCTCCCGCCCGTCTGGCGGCCGGCATGACCGCCATGCGGACGACAAGAGCCTCTTCTCCTTCTTCAAAAAGAACTGAGCATCTCTCATCCCTCCGTCCTGGGAGACGATGGGATGGGACACAGCAGGGGCACACAGGCAGGACACACGCAAAGATGACCCGACACATTGTGGACACACAGACGTACACAgatggacacagacacagagacagacagacggacacagaGACTTAGATGGACACAGAcaagtacagacacacagagtcacacacacaagacagacacagagtcacacacacaatagagacacaGAAAAAGGTAGACAGcacagaaatgtgtaaaatggaaattaacTCACCATTAGGGTACACGATTAGAGATAGATTTGAGTTTCggtttacaaaaaaatgaaaatgtagatGTGGCAAATTTTGTACCagagcaagaaaaaaacaaagcatgagAGATTTGCTTTGGTTGAAATCAAAGCTTTGGCTGTTGAGCCCCAGCGCTCCTCCGTCTCTGATCTCGCTAAGAAACCAGTCAAATACCATAGTGTCCAGCCCCACCCGTGACAGGGCCTGTTCTGGGACACTGCCTGTCTGGCTTCCGTGGGCGCTGGCAGCCGGCCGATGGGGATTTCCTCGGTGGGGAAACGGTGTTGTGCAGCTGTGCAGGTGGGAGCTGGTTACGTCTGGTCTGTGTCCTGCCCTGCAGTGCACTCTGGGTACTGTACTTGACTGGCTCTGCTGCGGAGCACAGGGGGACTCAAGTGTCAGCTGCTTGACCAAGGAAACTCGGGTgctgtttattaaaattattccGCAACGCACATcgacacttttttaaatgtttgaacaCCAAATTACAGGAGATATTCTGTATACCAGTGTGATCAAGTCAGTCACGAGTCGGGGGTCAGATTTTTCTACccagttttttcctttaattgctTTATGATGGAAGTTAAATCTAAGCAGTGTTCTAATTGCACAAGTTTATTTAtcaatttcagttattttgaaagcaaCAAGGAGGGGACAGGCGGGTCAGCTCCATGTGGCAATATGAGGACAGATCAGCCCGGCGTCCTGTCAGTTCTTGCTGGTGATGTGAATCagtttaagaaaagaaaagcagttgtATGGTGGGACCCAGTCTGTCTGACTCCTGAAGCGACAGAACGAGCTATTCTGCTGCTGAAGGGttttaataaacagaacaaaaacacctGAGCTTTGCTGGGGTGAGCTGCGGCCTGGGCATCTCTCAAACACAGGGCAGGAGAAGACCGGGGAGGACCTGATCTGTTCCAGGGCAGGCCTTCCACACAAGCCCCTAAATTGATTTAACTGAATTACATTATCAATTAAGAATTTTACGAACTGGTGGTGTGGAGTCCCTGCAGTGGGAAGGG

Function

symbol description
bicdl1 Predicted to enable dynactin binding activity and small GTPase binding activity. Involved in eye development. Acts upstream of or within several processes, including embryonic camera-type eye development; negative regulation of neuron projection development; and vesicle transport along microtubule. Predicted to be located in centrosome. Is expressed in brain; pronephros; and retina. Orthologous to human BICDL1 (BICD family like cargo adaptor 1).

NR:

description
PREDICTED: bicaudal D-related protein 1 isoform X3

GO: NA

KEGG:

id description
K16756 BICDL, CCDC64; BICD family-like cargo adapter

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018588 True 3152 mRNA 0.57 11 14707571 14731664

Neighbor

gene id symbol gene type direction distance location
AMCG00018586 LOC107677981,LOC107567443 coding upstream 60739 14630062 ~ 14646832 (+)
AMCG00018585 NA coding upstream 93126 14599262 ~ 14614445 (+)
AMCG00018577 NA coding upstream 119543 14574260 ~ 14588028 (+)
AMCG00018581 NA coding upstream 149771 14554089 ~ 14557800 (+)
AMCG00018582 pisd,LOC107663775 coding upstream 153501 14552094 ~ 14554070 (+)
AMCG00018593 NA coding downstream 90327 14821991 ~ 14824758 (+)
AMCG00018600 NA coding downstream 99836 14831500 ~ 14834064 (+)
AMCG00018608 cldn5,LOC103357131 coding downstream 195498 14927162 ~ 14927524 (+)
AMCG00018603 ufd1l coding downstream 217972 14949636 ~ 14954263 (+)
AMCG00018611 ppil2 coding downstream 698620 15430284 ~ 15468382 (+)
G117209 NA non-coding upstream 173371 14533963 ~ 14534200 (+)
G117197 NA non-coding upstream 268480 14437992 ~ 14439091 (+)
G117131 NA non-coding upstream 462253 14244708 ~ 14245318 (+)
G117130 NA non-coding upstream 463368 14242864 ~ 14244203 (+)
G116976 NA non-coding upstream 860479 13846890 ~ 13847092 (+)
G117353 NA non-coding downstream 4432 14736096 ~ 14738327 (+)
G117381 NA non-coding downstream 51842 14783506 ~ 14784333 (+)
G117382 NA non-coding downstream 54361 14786025 ~ 14786487 (+)
G117387 NA non-coding downstream 61132 14792796 ~ 14793804 (+)
G117388 NA non-coding downstream 62221 14793885 ~ 14794239 (+)
AMCG00018567 NA other upstream 295292 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 308032 14330841 ~ 14399539 (+)
G117178 NA other upstream 359830 14345090 ~ 14347741 (+)
AMCG00018551 NA other upstream 464854 14239242 ~ 14242717 (+)
AMCG00018553 cryba4,LOC106568369,LOC106563090 other upstream 516494 14189003 ~ 14191077 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other downstream 42451 14774115 ~ 14777110 (+)
G117383 NA other downstream 54959 14786623 ~ 14788133 (+)
AMCG00018602 LOC102789415 other downstream 222900 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2336548 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3249476 17981140 ~ 17983017 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location