AMCG00018589 (rab35,LOC103397428)


Basic Information

Item Value
gene id AMCG00018589
gene name rab35,LOC103397428
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14738394 ~ 14749164 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018589
TTCTCTCCCATCCTGTCGCCCTCTGGCGGTGGCGGAGGGGTAACGCTTCCTTTTTTCTTCGTTTCCACTCCTGCGCCTGCGCAGTGGAGCCGGTTTCTGTGCAGGGCTGGGTGCAGAGACACTTCCAGAGACGGTGAAGCGGAGTTTCCGGCTGTTTGTTACCCAGGGAGAGGATTGCTGACGCCGCCAAACCCCGACGAAAAACGCCGCTGGTTGGGGGGGGGACACTCGCAGGCCGGGGCAGAGGAATATCACAAGTGGGGGGGTCAGGGTTTGGCAAAGACACCGGGACCGAGACAGCAGCGGACAGCCAGCGGAAGAGGAGAACGGGCAGCGGCGAAAAAAGGCGGGGGGAACCGACCGAGCGCCGGCATGGCCAGGGACTACGATTACCTCTTTAAGTTGCTGATCATCGGCGACAGCGGTGTGGGGAAGAGCAGTCTTTTATTGCGATTTGCAGACAACACCTTTTCAGgcagCTACATCACCACCATCGGCGTGGACTTCAAGATCCGGACGGTTGAGATCAACGGGGAGAAGGTGAAGCTGCAGATCTGGGACACTGCAGGGCAGGAGCGTTTCCGCACAATCACGTCCACGTACTACAGAGGGACGCATGGGGTGATAGTGGTGTACGACGTCACGAGCGCAGAGTCCTTCGTCAACGTCAAGCGATGGCTCCACGAGATCAACCAGAACTGTGACGATGTGTGTCGGATATTAGtgGGCAATAAGAACGACGACCCCGGGTCCAAGGTAGTGGAGACGAACGATGCGCAGAAGTTTGCGGAACAGATGGGGATCCACCTCTTCGAGACGAGTGCGAAAGAGAACGTCAAtgtggaggagATGTTCAACTGCATCACGGAGCTGGTCCTGAAGGCCAAGAAGGAGGTCATGgccaagcagcagcagcagcagcagaacgACGTGGTGAAGCTCACCAAGAACAGTAAACGGAAGAAAAAGTGCTGCTAACGCACAGGCTCAGAGAAACGGCGCCAAGCAGGAACACGGCAACAGGAATAGGACTCCaaaacaaaacgacaacaacacgaaaaaaacaacaacccggAAATAACGAAAAATgatgataaaaatataaaatgaaaaaaatatatataaaaaaaaaaaaaacgacaaaaaaaatcaaaaacagtgTCCCTTTTGGACAATTGAATCAAGGATTTAAACTGAAGagaggaagaaacaaaacacaaggtgATAATGTACAGATTTTATTAGACGTTGGAAGGAGTTTTATTTGAGAATTCTTCGCTTCTATCTTTCGTGTTATTTAAAGAGGGGCtcctggtttattttattttttacatttttcttctgtcgAGGATCAGAAAGCAGGCAGCCGCCCCCCCAGTGTTCAGATATCGGTAACCGTTCCTTTTCTTTGGATCAATttaacttctttttttttcggCTGCTGCTTCTTACCTCCATTTGGTTGGTggtctcttcctcctcctcctcctcctcctcctcctcctgtcaGGGCTGGATATTATGGAAGATTTCCCAGCATCCCCACTCAGGGGcaacacacacttttacatattttttgttttgttttgttgggttgTTTTACAGGGAAGCAGACCAGGGAgtgagggag

Function

symbol description
rab35 Enables GTPase activity; guanyl ribonucleotide binding activity; and phosphatidylinositol-4,5-bisphosphate binding activity. Involved in several processes, including endosomal transport; plasma membrane to endosome transport; and protein localization to endosome. Located in several cellular components, including clathrin-coated endocytic vesicle; clathrin-coated pit; and intercellular bridge.

NR:

description
ras-related protein Rab-35

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07876 RAB35, RAB1C; Ras-related protein Rab-35

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018589 True 1630 mRNA 0.50 6 14738394 14749164

Neighbor

gene id symbol gene type direction distance location
AMCG00018591 NA coding downstream 36148 14648143 ~ 14702246 (-)
AMCG00018592 NA coding downstream 90289 14647092 ~ 14648105 (-)
AMCG00018587 drg1 coding downstream 142156 14591273 ~ 14596238 (-)
AMCG00018584 NA coding downstream 199112 14530002 ~ 14539282 (-)
AMCG00018571 gnaz,LOC107555529,LOC107686467,LOC107744122 coding downstream 277716 14450935 ~ 14460678 (-)
AMCG00018590 gcn1,LOC107699625,LOC107553027,LOC104958133,LOC107698162,LOC104964287 coding upstream 1115 14750279 ~ 14770330 (-)
AMCG00018596 rplp0 coding upstream 24810 14773974 ~ 14778855 (-)
AMCG00018598 pxn,LOC107748058,LOC107557596,LOC106579946 coding upstream 35216 14784380 ~ 14797365 (-)
AMCG00018594 ctu1 coding upstream 69619 14818783 ~ 14821860 (-)
AMCG00018595 NA coding upstream 75541 14824705 ~ 14830166 (-)
G117338 NA non-coding downstream 33936 14703640 ~ 14704458 (-)
G117319 NA non-coding downstream 102055 14635404 ~ 14636339 (-)
G117293 NA non-coding downstream 150344 14578236 ~ 14588050 (-)
G117254 NA non-coding downstream 259457 14478095 ~ 14478937 (-)
G117253 NA non-coding downstream 261175 14476990 ~ 14477219 (-)
G117432 NA non-coding upstream 31123 14780287 ~ 14784313 (-)
G117438 NA non-coding upstream 84692 14833856 ~ 14835725 (-)
G117441 NA non-coding upstream 107256 14856420 ~ 14857595 (-)
G117472 NA non-coding upstream 229877 14979041 ~ 14980384 (-)
G117501 NA non-coding upstream 465004 15214168 ~ 15214431 (-)
G117377 NA other downstream 82 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 217519 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 475240 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1010524 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1481144 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 749498 15498662 ~ 15518315 (-)
G117784 NA other upstream 2259734 17008898 ~ 17009301 (-)
G117823 NA other upstream 2476926 17226090 ~ 17256271 (-)
G117899 NA other upstream 2854192 17603356 ~ 17603848 (-)
G118075 NA other upstream 3717204 18466368 ~ 18474245 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_11257620_11264745 RAB35B, RAB35 coding CI01000010 null 11257417 ~ 11264745 (-)
bowfin (Amia calva) G61331 NA non-coding CM030127.1 CM030127.1 12008792 ~ 12009100 (+)
mexican tetra (Astyanax mexicanus) G56881 rab35,LOC108430363,LOC107699662,LOC107671023 non-coding NC_035902.1 CM008305.1 35811531 ~ 35822638 (-)