AMCG00018590 (gcn1,LOC107699625,LOC107553027,LOC104958133,LOC107698162,LOC104964287)


Basic Information

Item Value
gene id AMCG00018590
gene name gcn1,LOC107699625,LOC107553027,LOC104958133,LOC107698162,LOC104964287
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14750279 ~ 14770330 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018590
gcgcaCACCGGGCAGGTTGCGGACACCTTGAGGAGGTTTGCGGTGAAGGTGACGACGGCAagcgtgagagagagacgggCGGTCCTGGGGGAGCTGGAGCAATGTGTGGCCAGCACAGACCTGCCAGACACGGCTGTGAGGGGGCTGTGCAAACTCTTCTGTCTGACCCTCCACCGATACagggATGCGGCGTCCCGTCGGGCTCTTCATTCAGCCATTCGGAAGCTGGCGGAGTCGCAGCCCGATGCCATGGCAGCCAGCCTCCTGCACAGCCTGCAGGGCTGCGGTGTGATGAGCAAGACTGGGGTACCCAGtaagAGCACAGCTGCGGCCGCTTCTCTGGCCCTGTCCTGGACCTGCCTGCTGGTGCGCTGCGTGTTCCCCTGCACAGAGAGACGAGAAGGGCCCACCTGGAAGAGactgCTGGAGGTGCAGAGTTTGCTGCTGTCCGAGGTGCTGGGTGGGGCACCCAAGAACGCCCTACGATCCGCCCTGAAGAGGCTCAACCAGCTGTGGAGAGAGAACCCAGGTCTGGCAGATCAGTACCTGACCACACTGCTCAGCCTGGACCCAAACGCGAGCTCTCTGTGCCTGTTGGGCGCATGTGTGGAGTTCTGCACGGCCCAGAGAGACACCGCAACTGTGGACAAGCACAAGAGTGCCCTGCTGGACTTGTACCTCAAGACAGTTCTGATGAGCAAAACCAAGCCTCAGAAACACATCCTGGATAAGTGTGGCGCGGTGCTGCGTCACGTCTCGCACCCGGAGTTCAAAGAGCAGCTGCTGCCGGCCCTGCAGAAATCCCTCCTGCGCAGCCCAGAGAACGCCATGGAGACCGTTTCCAGTCTACTGGCCTCCGTAACCCTTGACCTCAGCCAGTATGCAATGGACATAGGAAAAGGACTGGCCAGTCAGCTGAAGTCGAACAGCCCGGTGCTGATGGAGCAGGCTGTGTTGGCGCTGCGGACTCTGGCCCAGCAGTGCAGCGACGCTACCGCTGTGCAGGAGCTCCTCACTCTACTCTTCAACATCCTGGGAGGCTCCGAGGGGAAGCTCAGTGTGGTGGCCCAGAAGATGAGCGTCCTCTCAGGTATCGGTAGTCTGAGTCATCACGCGGCATCGGGCAGCTCCACCACGACACTCAGCACTCAGGCCATTGATCTCTTCATCCCCTTCCTGCAGCAAGAGGtccATGAGGGCACACTGGTCCATGCTGTGGGTGTGATGGCTCAGTGGAGCGGCCGTATGACCGTGCAGGTGCCCCCCTCCCTGCTCACCTGGCTGAAGAAAGCCTTTACTCTGAAGACCAGCACCTCCGCAGTGCGCCATGCCTACTTGCAAAGCATGCTGGGAGCTTTCAAAGGAGACACGCTCTCCCAGGCACTGGAGCTGCTGCCCCTCCTGGTGCAGACGGTGGAAAAGGCGGCCGCCCAGCCGACCCAGCATTCCCTGCTCTGCGAGGCTGTGGCAGCTGCGGTGATGCTGTGTCGCCTCAGTCTTTTAGACTCCCACACCGagtccaagcTGCCTGGGTTCTGGCTGCTGGTCCTGGATGAGAAGAAACAGCTGTTCAGCTCTGAGAAGTTCCTGTCACAGGCGCCAGAGGAGGCCTTGTGTACAGTGCTGCAGCTGAGTGAGCGTCTCTTCCTGGACCATCCCCACAGACTTACTGACAACAAGGCGCAgATGTTCCATCGCAGTGTGGTGAGTGTGCTGCTGTGCCGGGAGTGGCGTGTGCGCAGACAGGCTCAGCAGACAGTGCGCCGCCTGCTGGGGGCCCTGGGTGGAGCCAAACTGGCCCATGGCCTTCTGGGGGAACTGAACACCGTGCTGAACACACACAAGGTGCTGCCTCCCGAGGTACTGGTGACGGAGGTGGGGGAGCTGACAGAGCTGGGCCGCTCCTACATCCACCCCCGTGTCCTACGGGAGGCGCTGTGCGTGATCGCCACGGTGCCAGGGCTGGGTGACGATCCCTCCGAGGCGGAGCGGCTGGCCAATGACATAATCATTGCAGCGCACCACCCCTCTATAgaggTGGCTCGGCGAGGCCTGTGGCCAGTCATCCTGTCCTACATGCAGCTGGACGCAGGAGCGTTTGTGGACAGGAACGCAGAGTCCATCCTGTCCAGCCTGCTGCAAAAGCAAAGCTCCGAGCAGGCTGCAGCTGCGATGAATGCAGTGGGTGCACTCTCTGTGCTCTCCCCGGGCAAGCTGCTCCCACGTGTGTTCGAGCGGATCATGGAGGTGCTGCAGCGGCCGGCACTGTGTCAGGTGACCCGCGAAGAGTACGCCATCATGAACACGCCCGACGGAGAGCTGTACGACAAGAGCATCCTGCAGAGTGCCCAGCAGGAGAGCACGAAGAAAGGAAACCTGAAGCGGGAGAACAAGGCGTACTCCTTCAAAGAGCAGATCATAGAGCTGGAGCTGAAGGAGgagatgaaaagaaagaagggCATCAAGGAGGAGCTACAGCTGAGCAGCAAGCAGAAGGAGATGCTGCAGGCCCAGCTGGAGAGGGAGACAGCCGTCCGCAAGAGGCTGCGGGAGTTGGATGAGGAGCTGCAGTCTGCGCTCAGCCTCTTGGGGGCAGTGTTGAGCAGGAAGCCGCCTCAGCTGGCCCAGCACCTGCCCACCATGCTGCGCTGCTTCTTGCCCCTGCTGAGCTCCCCCCTGGCAGCGCCCCGGGTTCAACAGCCCCTCCTGCACCTGGGGAACTGCCTCCTGCCCCCTGAGCTGCATGGCCTGGGCCAGCTGTTGGGTCACGTGACCCTGCGTTTGCTCCACCCGGCCTGTGAGCTGGACGAGGCGTGGTGTCAGGAGGAGCTGGGCGTGGCATCGTGCCGCGCTGTGGagctgctgcacacacacactgtgccacACAGAGAGGGGCGTACAGACCGCGaggTGCACCCTCTCTCAGGGCCAGCGTTCTCCTTCTGCTTCCCCTTCCTGCGTGCCATGCTGAAGGACACCCCTAACGACAGCGAGGAGGCGGAGTCTGTGCTAGTCAAGGCGCTGCAGGTGGTGCAGGAGCACGCCCAGCTCCGGAGCGTTCACCTCGGCAACGAGCACCCGGACGTGCCACTCGACGAGAATGGTCCAGAACTCCTGCCCCGGGTTGACATGCTGGTTCTGCTGACCAGGGTGATTGGGACCGGTGCCCCCCGGCTGCAGgtgCTGGCGTCCCAGTGTCTGACCACGCTCTGTGCCAGTGCAGGTGGGGGGCGGGGCTGTGCGGCAGCCGAGCAGCCAGAGATCGATGTTCTGCTGGAGGGGCTGCTGTCGCCCTGCTTCGCTGTGAGGGACGCCGTGCTCAGGGGCCTGTTGGAGCTGGAGATGGTGCTACCCACAGACAGTGAGGATGCGGACGGACTGAGTGTGCTCCGCCGCCTGTGGGTGGCTCGCTTCGAtgtggaggaggagggcagGCAGCTGGCAGACAGGCTGTGGCAGTCGCTGTGTTTGGAGGTGGTCCCAGAGCTGTGCACTCTGTTGATTGGTGACGTGACGCAGGCGGAGGGGGCGGTGCGGGCGGCGGGGGCAGACGCCCTGTCCAGCGCGGTGAGCCAGTACAGAGACCGGGCGCCTGCAGTGATGGGCCAGCTGGTGGAGCTGTACCAGGAGAAACTCTATCGCCCACCCCCAGTCCTGGACGCTCTGGGCAGGGTGATCTCAGAGTCCCCGCCAGACCAGTGGGAGGCCAGGTGTGGTATAGCCCTGGCCCTGAACAGGCTGTCTCAGTACCTGGACGGCTCCCAGGTGACGCCCCTGTTCCTGTTCTTCGTTCCTGACGCACTGAATGACCGGCACCCAGAGGTGCGTCGCGCTATGCTGGACGCAGCGCTGTCCGCCCTCAACACCCACGGCAAGGACAACGTGAGCTCGCTGCTGCCGGTGTTTGAGGAGTTCCTGCGTGGCGCCCCCCAGGACGCCAGCTACGACGCTGTGCGGCAGAGTGTGGTCGTGCTCATGGGCTCGCTGGCCAAGCATCTGGACCGCAGCGACCCCAAGGTCAAACCCATCGTGGCCAAGCTCATCACCACCCTGTCCACCCCCTCGCAGCAGGTCCAGGAGTCGGTGGCCAGCTGCCTGCCCCCGCTGGTCCCGGCCATAAAGGAGGACGCAGGAGGGATGGTGCGTaagctgctgcagctgctgctggagaGCGACAAGTACGCTGAGCGCAAGGGAGCCGCCTACGGGCTGGCCGGCCTGGTCAAGGGCCTGGGCATCCTGTCCCTGAAGCAACAGGACATCATGTCCACCCTGACCGACGCCATCCAGGATAAGAAGAACTTCCGACGCAGAGAAGGTGCCCTGTTTGCGTTCGAGATGCTGTGTAACATGCTGGGGAAGCTGTTCGAACCGTATGTGGTCCACGTGCTGCCACACCTGCTGCTCTGCTTCGGGGACGGCAACCAGTACGTCCGAGAGgcGGCAGATGACTGTGCCAAGGCTGTGATGCGAAACCTCAGTGCCCATGGGGTGAAGCTCGTGTTGCCCTCATTGCTGATGGCACTGGAGGAGGAGTCCTGGAGGACCAAGGCAGGCTCAGTGGAGCTCCTGGGTGCCATGGCCTTCTGTGCCCCCAAGCAGCTGTCCTCCTGCCTGCCCAGCATCGTGCCCAAGCTGACGGAGGTGCTGACCGACTCCCACGTCAAGGTGCAGAAGGCCGGCCAGCAGGCCCTGCGCCAGATCGGCTCCGTCATCCGCAACCCTGAGATCCTGGCGATCACACCCATCCTGTTGGACGCGCTGACCGAGCCATCGCGGAAGACCCACCGCTGCCTGCAGACGCTGCTGGACACTAAGTTCGTCCACTTCATAGACGCGCCATCCCTTGCCCTCATCATGCCCATTGTGCAGCGTGCCTTCATGGACCGCTCCACTGACACCCGCAAGATGGCTGCCCAGATCATCGGCAACATGTACTCTCTCACTGACCAGAAGGATCTCTCCCCCTACCTACCCAGCGTCATTCCTGGACTCAAGGCCTCACTGCTGGATCCTGTGCCTGAGGTGCGCACAGTCTCCGCCAAGGCGCTGGGTGCCATGGTGAAGGGCATGGGCGAGTCCTGCTTCGACGATCTGCTTCCCTGGCTGATGGAGACGCTGGCGTCTGAGCAGAGCTCTGTGGATCGCTCTGGGGCCGCCCAAGgCCTGGCGGAGGTGATGGCTGGTCTGGGGGTGGAGAAGTTGGACAGGCTGATGCCCGAGGTGGTGCAGACAGCCAGCCGGCTGGACATCGCATCCCACGTGCGGGACGGCTACATTATGATGTTCATCTACCTGCCGCTCACCTTTGGGGACCAGTTCACACCTTACGTCGGTCCCATCATCCCCTGCATCCTCAAGgcacTGGCAGATGAGAATGAGTATGTGCGTGACACAGCGCTGCGGGCGGGGCAGCGCATCATCAGCCAGTACGCCGAGACGGCCATCGCCCTGCTGCTGCCCGAGCTGGAGCAAGGCCTGTTCCACGACATGTGGAGGatcagGTTCAGCTCAGTTCAGTTGCTAGGTGACCTGCTGTTCCACATCTCCGGGGTAACGGGGAAGATGACCACAGAGACCGCCTCCGAGGACGACAACTTTGGGACGGCCCAGTCCAACAAGGCGATCATCGGGGCGCTGGGCCCGGAGCGGCGGAACCGGGTGCTCTCCGGCCTCTACATGGGCCGCTCAGACACGCAGCTGGTGGTGCGCCAGGCCTCACTGCACGTGTGGAAGATCGTGGTGTCCAACACACCGCGCACGCTGCGCGAGATCCTGCCCACCCTGTTCAGCCTGCTGCTCGGCTTCCTGGCCAGCACCTGCTCCGACAAGAGGACGATCGCGGCGCGGACGCTGGGGGATCTGGTGCGGAAGCTGGGAGAGAAAATCCTCCCGGAGATCATCCCCATCCTGGAGGAGGGTCTGCGCTCGGAGCACAGTGACCAGCGCCAGGGCGTCTGCATCGGCCTCAGCGAGATCATGAAGTCCACCAGCAAAGACGCGGTGATGGTGTTCTCGGAGTCCCTGGTGCCCACGGTGCGGCGGGCGCTGTGCGACCCACTGGAGGAGGTGCGTGAGGCGGCGGCCCTGACCTTCGAACAGCTCCACGCCACCATCGGACACCAAGCGCTGGACGATATCCTGCCCgccctgctgcagcagctggacGATGAGGAGACAGCAGAGTTCGCTCTGGATGGTCTGAAGCAGGTGATGGCAGTGAAGAGCCGCTCAGTGCTGCCCTACCTGGTGCCCAAGctCACGGCCCCTCCTGTGAACACGCGTGTGCTAGCATTCCTCTCCGCAGTGGCGGGAGACGCCCTGACACGCCACCTGGGAGTCATCCTGCCGGCACTGATGTCATCACTGAGAGACAAGCTGGGCAGCGAGGAGGGAGAACAGGAGCTGTCCAGCTGTCTGACGGTGTTGCTGTcggtggaggaggaggcaggGCAGCGGGTGGTGCTGGACGAGCTGCTGGACTTCAGCCGCTCGTCCGAGCCGGGGCTGCGCCTGTCCGCCGTGTCGCTGCTGAGCGGTTTCTTCTCGTGCACGCGGCACGAGCACAGCGCCCACACCCGCAACCTGCTGTCCGGCCTGCTGCGCCTGCTGAACGACCCCTGCCCGCAGGTCCTGCACCACAGCTGGGACACGCTCAACACCATCATCAAGCGGCTGGACGCAGGCAGTCAGCTGGCCCTCATCGACAACCTGCACCACGACCTCAAGCTGGTGGCCACGGAGGTCAAGGGTCAGAACCTGCCTGGCTTCTGCCTGCCCAAGAAGGGAGTGACCTGTGTCCTGCCAGTGCTGCGTGAGGGCGTGCTGACTGGGGCGCCAGAGCAGAAGGAGGAGGCGGCGCGCGCGCTGGGATTGGTCATCAAGCTGACCTCGGCCGAAGCCCTGCGGCCCTCCGTGGTGAACATCACCGGCCCCCTGATTCGCATCCTGGGGGATCGCTTCAGCTGGAGCGTGAAGACCGCCCTGCTGGAGACCCTCACCCTGCTACTGTCTAAGGTTGGGATCGCCCTGAAGCCCTTCCTGCCGCAGCTGCAGACCACCTTCCTGAAGGCGCTGCAGGACTCCAGCCGGGCGGTGCGGCTCCGGGCAGCTGAGGCGTTGGGCCAGCTGGTCACCATCCACAGCAAGGTGGACCCCCTGTTCACAGAGCAGCTCTCCGCCATCCGCAACACAGACGACCCTGGAGTCAGGGAGACTATGCTACAGGCTCTGCGGTTTGTGATCCAGGGAGCCGGGGGGAAGGTTGACCCCGCAATCCGGAAGAACATCACCACTGTGCTGCTTGGCATGCTGGGACACGATGAGGTGAGCACTGGGGGGAggcaggagaaagagaggaaaagagCAGGGGCAAGAAGGGGAGAGACGGACGTGTCGGGGGTGGACTGGATGGTGCGTCACGGCCGCGGCGTGGCTCTGTCCGTGGCAGTGAAGCGCTGCGCGGGGCGGCTGTGCGCGGGGGAGCAGGGCGCCACTGTCACAGAGGCCATCATGAGCAACGCCACTGCGGACAGGATCCCCATTGCCGTCAGTGGAATCAGAGCGATGGGCTTCCTGATGAAGCACCAGATCGAGACGGAGGGCGGGGGCAGCGTGCCGCCCAGGGTCATCACACAGTTCGTCAAGTGTCTGCAGAACCCCTCCAGTGATATCCGGTTGGTGGCGGAGCGGGTGCTGTGGTGGGTCTTCCGGGACCCCGCCACCCCCCCGCTGGAGCCGGCGCTGGTCAAGCCGCTGCTGAAGGCCCTGCTGGACAACACCAAGGACAAGAACACGAGTGTGCGGGCCCAGAGCGAGCACTGCATCGTCAGCCTGCTCCAGCTCCGACAGGGGGACCAGGGCATGACGAGCGTGACGGCCATCCTGGACACGGCCAGTACGGACCTGCTGGCGGAGTGCTGTCGTCGCTCTCTGCGCCGCATCGCCGGGCAGCCTGACAGCACGGAGGAGATCGACGACACCATCCTCAcctgagagacacacagagaccctgtcagtcacacacacactgacacacacactgactctcaCTGCAACACACTGAGGCACACATGCATTcatatacacaacacacaaaccagaaaactcacacacactgatgaaAAATCATATACAGTTCCTGCCCATCTGTACAACcctgaggcagagagagagagagagg

Function

symbol description
gcn1 Predicted to enable protein kinase binding activity; protein kinase regulator activity; and ribosome binding activity. Predicted to act upstream of or within positive regulation of kinase activity and regulation of translation. Orthologous to human GCN1 (GCN1 activator of EIF2AK4).

NR:

description
PREDICTED: translational activator GCN1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018590 True 8182 mRNA 0.63 56 14750279 14770330

Neighbor

gene id symbol gene type direction distance location
AMCG00018589 rab35,LOC103397428 coding downstream 1115 14738394 ~ 14749164 (-)
AMCG00018591 NA coding downstream 48033 14648143 ~ 14702246 (-)
AMCG00018592 NA coding downstream 102174 14647092 ~ 14648105 (-)
AMCG00018587 drg1 coding downstream 154041 14591273 ~ 14596238 (-)
AMCG00018584 NA coding downstream 210997 14530002 ~ 14539282 (-)
AMCG00018596 rplp0 coding upstream 3644 14773974 ~ 14778855 (-)
AMCG00018598 pxn,LOC107748058,LOC107557596,LOC106579946 coding upstream 14050 14784380 ~ 14797365 (-)
AMCG00018594 ctu1 coding upstream 48453 14818783 ~ 14821860 (-)
AMCG00018595 NA coding upstream 54375 14824705 ~ 14830166 (-)
AMCG00018599 NA coding upstream 68240 14838570 ~ 14849909 (-)
G117338 NA non-coding downstream 45821 14703640 ~ 14704458 (-)
G117319 NA non-coding downstream 113940 14635404 ~ 14636339 (-)
G117293 NA non-coding downstream 162229 14578236 ~ 14588050 (-)
G117254 NA non-coding downstream 271342 14478095 ~ 14478937 (-)
G117253 NA non-coding downstream 273060 14476990 ~ 14477219 (-)
G117432 NA non-coding upstream 9957 14780287 ~ 14784313 (-)
G117438 NA non-coding upstream 63526 14833856 ~ 14835725 (-)
G117441 NA non-coding upstream 86090 14856420 ~ 14857595 (-)
G117472 NA non-coding upstream 208711 14979041 ~ 14980384 (-)
G117501 NA non-coding upstream 443838 15214168 ~ 15214431 (-)
G117377 NA other downstream 11967 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 229404 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 487125 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1022409 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1493029 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 728332 15498662 ~ 15518315 (-)
G117784 NA other upstream 2238568 17008898 ~ 17009301 (-)
G117823 NA other upstream 2455760 17226090 ~ 17256271 (-)
G117899 NA other upstream 2833026 17603356 ~ 17603848 (-)
G118075 NA other upstream 3696038 18466368 ~ 18474245 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035388 gcn1 coding NC_007119.7 CM002892.2 3530761 ~ 3643374 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_11271806_11312993 GCN1 coding CI01000010 null 11271360 ~ 11312993 (-)