AMCG00018594 (ctu1)


Basic Information

Item Value
gene id AMCG00018594
gene name ctu1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14818783 ~ 14821860 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018594
GAAGTGCAGTCGACGTCACGTATCCAAAATGTCTGCGCCCGGTGTAACAATGCGATCATGGGAAGTGGGAGCCTGAGAAGTTAGTTGAAATTCAGCACAGTTTGGATTAGATTACATTGATATTCAGcatgcCGGTGGTGTGCAGCGGTTGTGAAGGGAGGCCGGCGGTGCTGAAGCGACCCAAGACAGGCCACTCCCTGTGCCGGGCCTGCTTCTTCTGGGCCTTCGAGGAGGAGGTGCACCAGACCGTGTTGTCGGCCCGGCTTTTCCGACCTGGCGAGCGGGTGGGCATCGGCGCCTCGGGGGGCAAGGACTCGACCGTCCTGGCGCATGTGATGAAGGTGCTGAATGAGCGCTACAGCTACGGCCTGGAGCTGGTGCTGCTCTCTGTGGACGAGGGCATCACCGGTTACCGCGATGACTCCCTGGAGACGGTGCGGAGGAACCAGCAGCAGTACAGCTTGCCCCTGGAGGTGGTGTCCTACCAGCAGCTGTACGGCTGGACCATGGATGACATTGTGCGCCAGGTGGGGCGGAAGAACAACTGCACCTTCTGCGGGGTGTTCCGCCGACAGGCGCTGGACCGCGGTGCCATGATGCTCAAGGTGGACAAGATCTGCACAGGTCACAACGCGGATGACGTTGCAGAGACGGTGCTGATGAACGTGCTGCGTGGTGACATCGCCCGTCTGCGTCGCTGCACCGCCATCATGACGGGCGGCGGGGgtgaggagggggtgggggatggaGGAGTCATCCCCCGCTGCAAGCCGTTGAAGTACGCCTACGAGAAGGAGATCGTGCTGTACGCCTACTTCAACAAGCTGGACTACTTCTCCACCGAGTGTATCTACTCTCCCAATGCTTACAGGGGCCACGCCCGCGCCTTCCTCAAGGACCTGGAGGCGGTGCGGCCCAGCTCCATCGTGGACGTCATCCACTCGGGGGAGAACCTGTGCGTGGGGGTTGGCGTGCGCATGCCAGTGCAGGGCAACTGCACACGCTGCGGCTACATCTCCAGCCAGAAGCTGTGCAAGGCATGTGTGCTACTGGAGGGCCTGAACCGTGGACTGCCCAAGCTGGGCATTGGCAAGCACCAGCGCCTGCATGACAAGATCCTGGCGCAGGAGCCACTCAGtgagaaggaggagaggaagcTGAGGGCTGTGGACTTCTGAGTTCTCATTTCTGGACTTAacaattctaaaaaaaatacatacttttttagTGCATGCAGGGCTTCTTCTGCAGTGactcccagccctggtcctggggaccctgTTGTCCTGCTCTTCTCTGTTCTAGCCCTGTGATTACAAAATCAAACTTTTAGCTGAgctttttaatcattttcaaaccATGGGGGGGAATATGACATGATGTAAGGCACATGGATTCTCAAAAGCTAagttaaactatttaaaaagtcaaattaaagcaattgaTTAGctctattaaataaaaaagcagtagGACAGTGGGGCTCTGGGCTGAGAAGTGCTGTCCTACAGCTCTAGCTCACAGTCTGTACCTGTATGCTGCTTCTCTCTGCTTTACAGCTTGCAACTGTGATCacctgcacagcacagagccCCTGCAGCGCTGCCTGGGACAATATGggattttgttggtttgttctCAACGCTGAGTGGTCTTGCTGTCCATTGTGATGTTTTCCACTGCTCttaattattacttttgttttattttaattttattttttaataccatTCTACAAGATTTAACATCCAGCTCTTCTTAGTCGCCCCAGAGAAAGGCATTGGtgtaaacaaaccaataaataccTAAAATACCAGTAACGACACATTTGATATTTGAGcacctttttttttgggggggggggtgttgaaCGTCCAGCACATACATGCAACAAACAGAGGATTGTTCAGGTCACTTCGTGTTTGCCCATTTCACCACCCCGCCCCAACGGTTTCCTTTAAACGTCTCCCCTATTTTCATGCTTCAGTGTTGACAGCTGGGCCCTGGCGCTTCTGCCCCTCACAGCCACTGTTGGGTCACCCGTGACACTAACCCACCCTGCCGCGCTGGCTGCGCTCTTCTATTTTGAGGCGCAACTAAAGACGCTGCAACCCAGCAGAGGCATCAGAACTGCTTTGCACCGTAAATCGTGATTGTGATACACGCATAAG

Function

symbol description
ctu1 Predicted to enable tRNA binding activity. Predicted to be involved in tRNA wobble position uridine thiolation. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytosol. Predicted to be part of cytosolic tRNA wobble base thiouridylase complex. Orthologous to human CTU1 (cytosolic thiouridylase subunit 1).

NR:

description
PREDICTED: cytoplasmic tRNA 2-thiolation protein 1

GO:

id name namespace
GO:0034227 tRNA thio-modification biological_process
GO:0002098 tRNA wobble uridine modification biological_process
GO:0032447 protein urmylation biological_process
GO:0005829 cytosol cellular_component
GO:0000049 tRNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG:

id description
K14168 CTU1, NCS6; cytoplasmic tRNA 2-thiolation protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018594 True 2171 mRNA 0.54 3 14818783 14821860

Neighbor

gene id symbol gene type direction distance location
AMCG00018598 pxn,LOC107748058,LOC107557596,LOC106579946 coding downstream 21418 14784380 ~ 14797365 (-)
AMCG00018596 rplp0 coding downstream 39928 14773974 ~ 14778855 (-)
AMCG00018590 gcn1,LOC107699625,LOC107553027,LOC104958133,LOC107698162,LOC104964287 coding downstream 48453 14750279 ~ 14770330 (-)
AMCG00018589 rab35,LOC103397428 coding downstream 69619 14738394 ~ 14749164 (-)
AMCG00018591 NA coding downstream 116537 14648143 ~ 14702246 (-)
AMCG00018595 NA coding upstream 2845 14824705 ~ 14830166 (-)
AMCG00018599 NA coding upstream 16710 14838570 ~ 14849909 (-)
AMCG00018597 NA coding upstream 37897 14859757 ~ 14871803 (-)
AMCG00018601 NA coding upstream 52891 14874751 ~ 14875404 (-)
AMCG00018607 sept5 coding upstream 58739 14880599 ~ 14885351 (-)
G117432 NA non-coding downstream 34470 14780287 ~ 14784313 (-)
G117338 NA non-coding downstream 114325 14703640 ~ 14704458 (-)
G117319 NA non-coding downstream 182444 14635404 ~ 14636339 (-)
G117293 NA non-coding downstream 230733 14578236 ~ 14588050 (-)
G117254 NA non-coding downstream 339846 14478095 ~ 14478937 (-)
G117438 NA non-coding upstream 11996 14833856 ~ 14835725 (-)
G117441 NA non-coding upstream 34560 14856420 ~ 14857595 (-)
G117472 NA non-coding upstream 157181 14979041 ~ 14980384 (-)
G117501 NA non-coding upstream 392308 15214168 ~ 15214431 (-)
G117646 tbx1 non-coding upstream 1200738 16022598 ~ 16025073 (-)
G117377 NA other downstream 80471 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 297908 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 555629 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1090913 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1561533 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 676802 15498662 ~ 15518315 (-)
G117784 NA other upstream 2187038 17008898 ~ 17009301 (-)
G117823 NA other upstream 2404230 17226090 ~ 17256271 (-)
G117899 NA other upstream 2781496 17603356 ~ 17603848 (-)
G118075 NA other upstream 3644508 18466368 ~ 18474245 (-)

Expression


Co-expression Network