AMCG00018595


Basic Information

Item Value
gene id AMCG00018595
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14824705 ~ 14830166 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018595
GGggatttgtttcagtgtttaattgtattgacttattttattttaaaaacttgtaGGTAGAATAATTCACATTCTCACAGGAGGCAGTCTGTCTTGGTCCCCCTTCTCTGTCACGGTCCCTGTCTCTGATGGAGAGCATGGAGGAGTTTGACCGGGAGTGTCCCATGGTGAAGTCATTCTGCCAGCTGCTGTCCACCCAGGAGTTCGAGCAGCAGGGGGCATCGTACACACAGCGGGCACTGGCTGAGCTGTTCTCCACCATGGAGCGCCAGCCTGAGCTGTGTGAGCGTGTCATCCGCAAGAGGAAACAGGCCGAGCTGGAGTGCGGGCGCCTGGGTGGGGTCATCAAGGCCAAGTTCTTCTCGGCGGTCGAGGGTCAGATGAACCGCTGTAACACAGTGGATGCCAAAGAGCTGAGGGAACGTGTGGGGCAGCTGCGGCAGGAGATGGAGAAGGTGCACCGATACGCACAAGAAGCGAAAAGTGACAACAAGAGATCCTCCAAGCGTCTGGAGGAGAGGAGGCACAGAAACCTGCTGGGGGTGTTGACTGAGGGAGGGGCCTCACTCCCTTCCTCACCAGCTGGAGCGCCCCCAGctgcccctcctcctcctcctcctcctcctcctcctccagccccCCCCCTGCCCAATGCTCTTGTTCAGACTCCCCTGAGAGACCGGACCAACGTGCAGCAGCCTCACTTTCAGGTGGCTGCGACCCCTGACCTCCTGGCCAGTTACGGCCTCTCCCGACTGAACCGCGGACACGACAGCTGGGCAGATTCTCACAGCCCCTGCgtctctgtccctcccctcaACATCCAGCAGGAGTTGTTGGCCTGTGACCCCCTGTCCAGGCTGAAGGCGACTGGGATCGTGAGATCTCCAGGCGGCACTCCCGTGGCCACACCCAGCAGGAGACGTCCAATCCGGGGCCAGGACAGCTCCCCCGCCTCCGCCTTCAATACGGCGCTGCTCTCCAAGTTCCGGAATGCCCAGAGCCCCTGCCCCCCGGGCCCCGACTCCCCCCGCTGCAGCTACAGCGACAGCGACAGTGAGGGCTCTGGGTTTGCAACTCCTaactgctctccctctccctcttgaAACCATCTGTgtctcaccctctccctccttcatTTCCTGCTGATTTTCGTgttctctctctgactctcccACACTTTGTCTGTCTTATGACTTTCTGCTTTTGAAAACTCCACTATGTACTGAGAGGGCGCTCTCTGACACTTTAGAAATGTACTTCTATGCAAAAAAGTTTTACCAAACTATACTGTTAGGCTAGCAAACGTTCTACTGTTATGTACCAAATTGTTTTCTCttaaattgtgtattattttgtaagattattttttagccaaataataaaaaaaaatgtttttggaaaattgacatggaaatgaaatgtataGTCAGGTGTATTGGTGCCCTGTATTAGTATCTGTTAGCGCTCAGTCCACCTGCAACATGTGTAACTGCTGGACAATGGCTAGAagtaatattattcatattttatcttAAAACCAAAGACTCGAATGAAGTGCAAAGAGGTGAGGTGTATTGGGGGATTCCAGCTGCTCTACAGTAACTCACCTGACAATTGACTGCAAAATGAACTCTGTTGGTTGTTAGTGAAGCCAGGAGTCTGACCTGCGGTGGCCAGAGTCCAAAGGAGGGGGGGGACTCAGTTTAACTTGGCCAGTCTGCAATGGTGATTCTGCACAGCGTGTGTCCTGTGCTGTGACCCATATTTCAGCGGCAGGATACCACAGCTCCTGGCTCTCGGAGCTTCCCAGGTTGTTTCCCTACACaagaaaactttattttatagtttcctACTTACTTCTAtaacttcaattaaaatgatgatACACAACATAAACGGAGTGAACGTGTTTGCATGATTTCATTTATAGCGTCTCCCACCTTCCCCACGCCCCTGTGAAGTCACTGCAAAATGTGACGCTGCTGGTTTAGGAAGCGATAGAGAGAAAT

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018595 True 2012 mRNA 0.52 7 14824705 14830166

Neighbor

gene id symbol gene type direction distance location
AMCG00018594 ctu1 coding downstream 2845 14818783 ~ 14821860 (-)
AMCG00018598 pxn,LOC107748058,LOC107557596,LOC106579946 coding downstream 27340 14784380 ~ 14797365 (-)
AMCG00018596 rplp0 coding downstream 45850 14773974 ~ 14778855 (-)
AMCG00018590 gcn1,LOC107699625,LOC107553027,LOC104958133,LOC107698162,LOC104964287 coding downstream 54375 14750279 ~ 14770330 (-)
AMCG00018589 rab35,LOC103397428 coding downstream 75541 14738394 ~ 14749164 (-)
AMCG00018599 NA coding upstream 8404 14838570 ~ 14849909 (-)
AMCG00018597 NA coding upstream 29591 14859757 ~ 14871803 (-)
AMCG00018601 NA coding upstream 44585 14874751 ~ 14875404 (-)
AMCG00018607 sept5 coding upstream 50433 14880599 ~ 14885351 (-)
AMCG00018606 LOC106580435,LOC105014311,LOC108265487 coding upstream 69646 14899812 ~ 14923007 (-)
G117432 NA non-coding downstream 40392 14780287 ~ 14784313 (-)
G117338 NA non-coding downstream 120247 14703640 ~ 14704458 (-)
G117319 NA non-coding downstream 188366 14635404 ~ 14636339 (-)
G117293 NA non-coding downstream 236655 14578236 ~ 14588050 (-)
G117254 NA non-coding downstream 345768 14478095 ~ 14478937 (-)
G117438 NA non-coding upstream 3690 14833856 ~ 14835725 (-)
G117441 NA non-coding upstream 26254 14856420 ~ 14857595 (-)
G117472 NA non-coding upstream 148875 14979041 ~ 14980384 (-)
G117501 NA non-coding upstream 384002 15214168 ~ 15214431 (-)
G117646 tbx1 non-coding upstream 1192432 16022598 ~ 16025073 (-)
G117377 NA other downstream 86393 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 303830 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 561551 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1096835 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1567455 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 668496 15498662 ~ 15518315 (-)
G117784 NA other upstream 2178732 17008898 ~ 17009301 (-)
G117823 NA other upstream 2395924 17226090 ~ 17256271 (-)
G117899 NA other upstream 2773190 17603356 ~ 17603848 (-)
G118075 NA other upstream 3636202 18466368 ~ 18474245 (-)

Expression


Co-expression Network