AMCG00018596 (rplp0)


Basic Information

Item Value
gene id AMCG00018596
gene name rplp0
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14773974 ~ 14778855 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018596
TGTATTGTGAGATCGCTCTTATATTTGTCTTTCCATTGCGCTGTACAGTATTGTAGGTCGTTGCGCTGGTTGAGACTATTTTCCCTGTGTATAGTAATGTATTCGCTTTAGATTTCCCTCCAAAAAGAGCCTTTAATATGCATGTGAGGTACTATAAAGGCCctgagaaaatgtgtatataagtTAATGTATCCTGCAGTTAAGCCTGTATGTATAGAATTGAGAAACTCTACCACTTGTATAAAATTTAATGCGGTTTATGTCGTCCTGTTGTGGATTTAACACGCGGACCCAGTTAATCAAAACGTGACGTGATTGCTTTCGGTTGTCTTCATGAACAgaatcaaaacattttctacaCGTCACAATGCAGTTTATGATTGCTGAAGAGACTGCGTACATCTAGAAATGACGTAATTGAGGGCTCGGGTCGCAATCTACTTTATACTGAAGTTTGATTAGCACTCACTGACCTGTTCTGAAGAGCTATAATACAGTTGACACCTTGTCTTTAAACCAGCTGTGCAGCGATCCTTGGAAGCACTGTCAAGATGCCCAGGGAAGACAGGGCTACGTGGAAGTCCAACTATTTTATGAAAATCATCCAACTGCTGGATGACTACCCAAAGTGCTTCATTGTGGGTGCGGACAATGTGGGATCCAAGCAGATGCAGACGATCCGTCTGTCCCTGCGGGGAAAGGCCGTGGTGCTGATGGGCAAGAACACCATGATGCGCAAAGCCATCCGTGGACACCTGGAGAACAACCCCGCTCTGGAGAAGCTGCTGCCACACATCCGTGGGAACGTGGGCTTCGTGTTCACCAAGGAGGATCTGACCGAGATCAGGGACATGCTGCTGGCCAACAAGGTGCCAGCAGCGGCGCGTGCAGGTGCCATCGCTCCCTGTGAGGTGACTGTGCCGGCGCAGAACACTGGGCTGGGCCCCGAGAAAACCTCCTTCTTCCAGGCCCTTGGTATCACCACCAAGATCTCCAGGGGTACCATTGAAATCCTGAGCGACGTGCAGCTGATCAAGACTGGAGACAAGGTGGGCGCCAGCGAGGCCACGCTGCTCAATATGCTGAACATCTCGCCCTTCTCCTTCGGCCTGATCATCCAGCAGGTGTATGACAACGGCAGCGTCTACAGCCCTGAGGTTCTGGACATCACTGAGGACACCCTGCACCAGCGCTTCCTGGAGGGCGTGAGGAACGTGGCCAGTGTGTGCCTGGAGATCGGGTACCCCACTGTGGCCTCCCTCCCCCACTCCATCATCAACGGCTACAAGAGAGTCCTGGCCATCGCGATGGAGACAGACTACTCCTTCCCCCTGGCTGATAAGGTCAAAGCTTTCCTGGCTGACCCCACAGCCTTTGCTGTCGCCGCCCCAGTGGCTGCAGCTGAAACTGCAGCTGCCACCCCCGCTGCCAAGGAGGAGGTGAAGGAGGAGTCCGAGGAGTCTGACGACGACATGGGCTTCGGGCTGTTCGACTAGGGACCCCTGTGAGAAACGGCAATCAATAAAGTCACCCAAATACCCCAGTCACTGTGTGCGTCTCCTAATTTACACCCCCAGCGTCCCTCAGTTCTGCCACTCTGGTCTGCCCAACTGCACTCCCTTAATGTGGATTTCATTGCAGGAGAggactttgtgttttttattctttctgctttacatgattggaaactgtaataaatacactactgtaagaaaacgtttccatgtgcaacaataacaaatatttgctctttattat

Function

symbol description
rplp0 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in cytoplasm; nucleus; and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in several structures, including brain; digestive system; eye; otic vesicle; and ovary. Orthologous to several human genes including RPLP0 (ribosomal protein lateral stalk subunit P0).

NR:

description
PREDICTED: 60S acidic ribosomal protein P0

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02941 RP-LP0, RPLP0; large subunit ribosomal protein LP0

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018596 True 1758 mRNA 0.50 8 14773974 14778855

Neighbor

gene id symbol gene type direction distance location
AMCG00018590 gcn1,LOC107699625,LOC107553027,LOC104958133,LOC107698162,LOC104964287 coding downstream 3644 14750279 ~ 14770330 (-)
AMCG00018589 rab35,LOC103397428 coding downstream 24810 14738394 ~ 14749164 (-)
AMCG00018591 NA coding downstream 71728 14648143 ~ 14702246 (-)
AMCG00018592 NA coding downstream 125869 14647092 ~ 14648105 (-)
AMCG00018587 drg1 coding downstream 177736 14591273 ~ 14596238 (-)
AMCG00018598 pxn,LOC107748058,LOC107557596,LOC106579946 coding upstream 5525 14784380 ~ 14797365 (-)
AMCG00018594 ctu1 coding upstream 39928 14818783 ~ 14821860 (-)
AMCG00018595 NA coding upstream 45850 14824705 ~ 14830166 (-)
AMCG00018599 NA coding upstream 59715 14838570 ~ 14849909 (-)
AMCG00018597 NA coding upstream 80902 14859757 ~ 14871803 (-)
G117338 NA non-coding downstream 69516 14703640 ~ 14704458 (-)
G117319 NA non-coding downstream 137635 14635404 ~ 14636339 (-)
G117293 NA non-coding downstream 185924 14578236 ~ 14588050 (-)
G117254 NA non-coding downstream 295037 14478095 ~ 14478937 (-)
G117253 NA non-coding downstream 296755 14476990 ~ 14477219 (-)
G117432 NA non-coding upstream 1432 14780287 ~ 14784313 (-)
G117438 NA non-coding upstream 55001 14833856 ~ 14835725 (-)
G117441 NA non-coding upstream 77565 14856420 ~ 14857595 (-)
G117472 NA non-coding upstream 200186 14979041 ~ 14980384 (-)
G117501 NA non-coding upstream 435313 15214168 ~ 15214431 (-)
G117377 NA other downstream 35662 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 253099 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 510820 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1046104 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1516724 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 719807 15498662 ~ 15518315 (-)
G117784 NA other upstream 2230043 17008898 ~ 17009301 (-)
G117823 NA other upstream 2447235 17226090 ~ 17256271 (-)
G117899 NA other upstream 2824501 17603356 ~ 17603848 (-)
G118075 NA other upstream 3687513 18466368 ~ 18474245 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000170_00095190_00099090 RPLP0.S, RPLP0 coding CI01000170 null 95150 ~ 99466 (-)