AMCG00018597


Basic Information

Item Value
gene id AMCG00018597
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14859757 ~ 14871803 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018597
CGTTGACGCCGGCGGACCCGGTATGCAGTTACACACCCACTTCCTGTCCGTACATGTGAGTTTGTGCTGCCTGAAAACTAGCTGAAAACCACTGCGGTCTCACGTTGGGAATTCAAGTGACACCAAGCTGCCATGGGGAGACTGAGGAAGAGACACAACTGGAAGGGCCGGCAGCAGCCAGACCCAGACTCCCTGCCAGTGGGGGAGCGGAGCGAGGTAGTGGTGGAGCTGAAAGATGGAGAGACGCTGAAGGGAGTGGACGAGAGCAATGTCCTGGTTCTGCCCGCGACTAAGTCAAAGAAGAAGCAGACAGCGACACAGAGGAGCCGGCCCAGCAAACCACCTCTGAGCCGAAAGCAGAAGAAGCAGCTCCAGAAGGTCCTGgagcagaaagaaaagaaggcCCAGcgtgCCGATGTTCTGAGCAGGCTGGCAGAGGTGCAGCTCAGTGAGGCCGAGATGAAGCTGCTGTACACCACCTCCAAGCTGGGCACCGGGGAGCGTCTGTACCAGAGCAAACTGCACGTGGAAGAGGTGGCAAACGGGGGGCCGGTCAGGATCAGCAGCCTTGGGGGAGCCAACCGcaagaggaagagaaggaagaaggcggaagatgaggaggaggaaggagaggaagagaagcaCTCGGGTGGAGGGGAGGAGTCCGACAGCACTGACACCTCCTCTGACGAAGATGAAGGAGCAGAAGTCGGGAGGACGCAGAGTACGGACAGAGGGGCCAATGTGCCGCCCGTTGCAGAGGGTCCGGTCTGCCTGCCTCCGGAGAAGAAACCAGCACCTGCAGCGCTGTCGGAACCAAAACCTGGACCAGCCCCACTCAGCAGGTCGGGTCAGACGCCGTCAGAGCCCACTGTCTTTATACCTGTGGACCGCAGCCCGGAGATCCAGGCGTGTCGTCTGAAGCTGCCGGTGCTGGGGGAGGAACAGCAGATTATGGAGGCGGTGAGGGAGAGCCAGTGTGTGGTGCTGTGTGGGGAGACAGGCAGCGGAAAGACCACTCAGGTCCCGCAGTTCCTGTACGAAGCGGGATATGCCAGTGGTGCTGGCATCATTGGTGTCACAGAGCCCCGTAGGGTGGCAGCGGTCAGCATGTCCCAGCGAGTGGCTAAGGAGATGAACCTGTCTACACGGTTGGTCTCCTACCAGATCAGGTACGAGGGCAATGTGACGAGCGACACCAAGATCAAGTTCATGACGGACGGCGTGCTGCTCAAGGAGATTCAGAAGGATTTTCTGCTGCAGAAGTACAGCGTGGTGGTGATTGACGAGGCCCATGAGCGCAGCGTGTACACGGACATCCTGATCGGCCTGCTCTCACGCATCCTGCCGCTGAGACACAAGAAGGGGCGCCCCATGAAGCTGATAGTGATGTCAGCCACGCTGCGCATTGAGGACTTCACCGAGAACAAGCGCCtcttccccacccccccgcccctcaTCAAGgtgGACGCCCGTCAGTTCCCGGTCACTGTCCACTTCAACAAGCGCACCCCCCTGGACGACTACACTGGGGAGGCCTTCCGCAAGACCTGCAAGATCCACCGCATGCTACCGCCTGAGATTGAGGGCAAGGAAGACACCTCGGAGGAGATGAGGAAATTTAAGAAAGCCAAGCAGAAGAAGACAGTGTCCCTGCCCAAGATCGACCTGGACACCTACTCCGCTCTGCCCCTGGACGAGGGGGATGAGGACCGTGAGGCCGGGCTTGGGGACGAGGAGGACGGATCCGACCTGGATCTGGACctgggggaggagggaggagctGGGGACGGAGGTACGGGGAGAGCAAAACAAATGAGTCGGAGTAGAACCGGCCAGGCTGCCTGTGTGGCCGGTGCTGTGTTCAGGCCCCCTCCCCAGGGCACGCGCCTCTGCGTGGTGGCGACGAACGTGGCGGAGACCTCGCTGACTATCCCAGGGGTCAAATACGTGGTAGACTGCGGCCGGGTGAAGAAGCGCTTCTACGACAGAGTGACCGGTGTCTCCTCCTTCAAGGTCAACTGGACCTCCCAGGCCTCGGCCAATCAGAGGGCAGGGCGGGCGGGCCGCACGGAGCCCGGCCACTGCtacagGCTATACTCCTCTGCGGTGTTCAGTGATTTCGAGGAGTTCTCCCCGGCTGAAATTACGCGGCGGCCAGTGGATGACCTGGTTCTGCAGATGAAGGACCTGAACATCGAGAAGGTTGTCAATTTCCCtttccccacccccccggcCACGGAGTCCCTGGTGGCGGCTGAGCAGCTACTGGTGTCCCTGGGAGCACTGGAGGAGCCCCCTCGGACCGGCAGGCTGAAGCAGGTGCAGCAGGCCATGCTGAGCTCTCCCATCACCCCCCTGGGTCGCGCCATGGCATCCTTCCCCGTGGCACCGCGTTACGCCAAGATGCTGGCCCTGGGGTACCAGGAGGGCTGCCTGCCGTATGTCATCACCATCGTTGCCGCCATGACGGTCAGAGAGATCTTCCAGGAGTTCGACAGgccagCGGGCAGTGAGGAGGAGAAGGCCGTGCTGTCCCAGCGGCAGGCCCGTCTGTCCCAGATGAGGCGACTGTGGGCAGGGCAGGGGGCGTCGCTGCAGTTAGGCGACCTCATGGTGATGCTGGGCGCGGTGGGGGCCTGTGAGTACGCGGGCTGCACCCCCAAATTCTGCGAGGACAATGGGCTGCGCTACAAAGCTATGCTGGAGATCAGGAGACTGCGAGGACAGCTGACCACTGCAGtgaatgCAGTGTGCCCTGAATCTGGGCTGTTCCTGGACCCCCGCATGCCTCCCCCCACTGAGAGCCAGGTGTGCTGTCTGCGGCAGGTGGTACTGGGAGGCCTGGGGGACCACTTGGCTCGGCGTGTGCAGCCCCACGAGCTGCTGGATCCCCAGTGGAGGAACGGATACAAGaCGCCCCTGCTGGACGACCCAGTGTTTATCCACCCCAGCTCCGCCTTGTTCAAATCCCTGCCAGAGTTTGTTGTCTACCAGGAGATCACAGAGACCCGCAAGCTGTACATGAGAGgcataTCTGCGGTGGAGGCGAACTGGATCCCCCAGCTGTTGCCCCAGTACTGTCACTTCGGGAAGCCCCTGGAGACTCCGCCCCCCCGCCTGTGTCCAGACAGCGGCCGTGTGCGGTGTCACTGCGAGAGCACCTTCTACAGAGTTGGCTGGCAGCTCCCCGCGGTGGAGATGGATTACCCAGAAGGCCTTGAGCGCTACAAACTCTTTGCTCGATTCCTGCTGGAAGGAGAGgTGTGCCCTAAACTGCGTTCCTATTCGAAGTGCCTGCTTTCCAGCCCGTCCACCATGCTAAAAACCTGGGCGAAACTGCAGCCCAGGACTGAGGCCCTGCTGGGGGCGCTTGTGACCGAGAAGGTGGACTGTCGCCAGGCACTGTTGTCAGCCTGGAGCAGAGACGGCAAATATCTCCTGTCTGTGTACTGTCAGTGGCTCCCTGAGGTGATGCACCAAAACGTGGCCAAAGACTGGCCACCTGTGTGACCTCCCCGGCCCTCCACTGCCCATCAACCCAGGACAGAAAAATACCTGTTCCTGCTCCTTCCTGTCACAACACTCTGGAACAGTCTGCTATACTGTAAAACACTCTGGAATACTCTGGAACTCTCTGCTCCCATGTTCTCCTAAAAACATCAGACACTTCTTTTGTTCCAGAAACTCCCTctgcacaggaaaaacacaacacttctgtctttttttacCTTTTGTGTTGATTCAGGGGAACCAAGTTCCAGGTGTTACACAACTGTGGAGGGTGGCCATctcctctgttttttttattattttttgtacacattttactACAAACTGATGAATCAACAAAGTGACAGATTCTTCCTGCCCATGTGGATTTTCAGTACGgcctttttaaaagaacaaaaccaaaagctgAAAAACCTTCCGTTCCTCTGCAGCGGTTTGCTCTGAGCGGGCGTTTCTCTGTGGCCTGTGAAGTCACCCGTGCAGGTCACACAGACAGCTAGATCTCTGCAGCAGACGAGTGACCAGTTTggcattttattgaaaaacGACATAATACCTCCTGTTGTATGTTTGCAGTGACCTAGTGTGTTTCTGGAAGGGCTGACGGTGCAAGAATGTGTACAAAGCCCTGGTCTTTATAAGACCTTCATTACAGTGTACAAGTTCATatacagtgtttaaaataaagtgtggTCATTGTG

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14780 DHX37, DHR1; ATP-dependent RNA helicase DHX37/DHR1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018597 True 4214 mRNA 0.58 26 14859757 14871803

Neighbor

gene id symbol gene type direction distance location
AMCG00018599 NA coding downstream 9848 14838570 ~ 14849909 (-)
AMCG00018595 NA coding downstream 29591 14824705 ~ 14830166 (-)
AMCG00018594 ctu1 coding downstream 37897 14818783 ~ 14821860 (-)
AMCG00018598 pxn,LOC107748058,LOC107557596,LOC106579946 coding downstream 62392 14784380 ~ 14797365 (-)
AMCG00018596 rplp0 coding downstream 80902 14773974 ~ 14778855 (-)
AMCG00018601 NA coding upstream 2948 14874751 ~ 14875404 (-)
AMCG00018607 sept5 coding upstream 8796 14880599 ~ 14885351 (-)
AMCG00018606 LOC106580435,LOC105014311,LOC108265487 coding upstream 28009 14899812 ~ 14923007 (-)
AMCG00018605 cdc45 coding upstream 67971 14939774 ~ 14948267 (-)
AMCG00018604 NA coding upstream 85450 14957253 ~ 14957886 (-)
G117441 NA non-coding downstream 2162 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 24032 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 75444 14780287 ~ 14784313 (-)
G117338 NA non-coding downstream 155299 14703640 ~ 14704458 (-)
G117319 NA non-coding downstream 223418 14635404 ~ 14636339 (-)
G117472 NA non-coding upstream 107238 14979041 ~ 14980384 (-)
G117501 NA non-coding upstream 342365 15214168 ~ 15214431 (-)
G117646 tbx1 non-coding upstream 1150795 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 1423027 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 2282199 17154002 ~ 17155261 (-)
G117377 NA other downstream 121445 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 338882 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 596603 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1131887 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1602507 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 626859 15498662 ~ 15518315 (-)
G117784 NA other upstream 2137095 17008898 ~ 17009301 (-)
G117823 NA other upstream 2354287 17226090 ~ 17256271 (-)
G117899 NA other upstream 2731553 17603356 ~ 17603848 (-)
G118075 NA other upstream 3594565 18466368 ~ 18474245 (-)

Expression


Co-expression Network