AMCG00018598 (pxn,LOC107748058,LOC107557596,LOC106579946)


Basic Information

Item Value
gene id AMCG00018598
gene name pxn,LOC107748058,LOC107557596,LOC106579946
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14784380 ~ 14797365 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018598
ATGCTGGTATGTGGTGTGAGCAAGCAAGGGGGGCTGGGCGGGACTCTGTACTTCTCTGAGGCTGTGCCAGAGCTGCTGGgttgttttgctgctTTGCTGCTCCAGTTGTTATCATTGTTGCTGCCCTCTGGTCAGAAGTCTAGAGGCCCACTgactgtgcgtctctctctctctctctctctctccccagatGCCCTGCTAGCTGACCTTGAGTCGACGACCTCGCACATCTCGAAGCGGCCTGTGTTCCTGTCCGAGGAGGCCCCCTACTCGTACCCCACTGGGGGGCCCACTTACCAGGACATTGCCCCGCCCCCTGTGCCCCCCCCGCCCTCCGTGGAGGCGCTCAACGGCACCGTACTTGACCCCGCTGATGCCTGGCCCTCGCAGCCCCCCCCCGCCTCCCACTACTCCCCCTCGCAGTCTTACAGCTCCATAGTGAAGGGAGTGTCCTCAGGGTCccaggacagcagcagcagccccccccCATCTCACAGCGAAGAGGACCACGTCTACAGTTTTCCTAACAAGCAGAAGCCAGGTGACTCGGTGGCAGCGATGAGCTCGTCTCTGGGCAGTAACCTGTCGGAGCTGGACCGGCTGCTGCTGGAGCTCaatgcagtacagcacagtgcaccCTCCTTCCCCACCACAGAGGACTCCGTGCCCGCCGTGCCCTCCTGCAGCACCACCCACTATGCCGGCCAGGAGAACGGGGGCGGCTCGCTGGGTAAGGCCGGCCCCCCAACCAAGGACAAGCCCAAACGCAGCGGGGGGAGGGGCATTGAGGACGTACGGCCCAGCGTGGAGAGCCTGCTGGATGAGCTGGAGAGCTCCGTGCCCAACCCCACGCCCACCACCTCGGTGGTGCATTCTGAGGTGACGGATGGACAGAGGGACACCCCCACACAGCAGCAGGCACGGATATCAGCATCTTCGGCCACACGCGAGCTGGACGAGCTCATGGCCTCACTGTCTGACTTCAAGGTGCAGAGCAACCCCAGCTCTGTGGGGTCTCTGAACTCTGACTCATTTCTGGACACCACTGACCTCCTGCTGACCAACAGTCTGGGGGTCACCACAGCTGCCCCTGcttccccctcctcttcccccAAGCCCCTCTCTGCCATCATGCCCCCTCCCCCAAGAGACTCCCCTCTGCCTCGCACCCCCAGCCCCCTGGCACCCCTCCACATTGACGAGGAAGGGATTGCAGCCGGCGCTCCCAAAACGACACCCAAGGTCACCACCCCAACCTGCCTGACCTCCAACCTTCCTCTCACGGGGCTGCCCTGGCTGGTGACAGCCATGTCCCCACAATCCCGGTCTCAGTTAGCGACTCTGGCACCTGAGAGCCGTGACCCCAGTGACCCAGAAGTGATCATCGACGTCTCGGCCACCATGCTGAGCTCGCGTCTGGACTCCCTGGTGGTACTCTCTGAGGCGCCTTCCTCCACCCTGGCTCCCCTCTGCCCCGCCACCACTGACGATCCGAAGGGGAAGTCTGTGGATAAGAAGAGGCCTGATTCCCCCCCTCCTTCACCGGAGCCCTCCCTGGATGAGGCTCTGGACAGGCTGCTGGCCATGAGCTGTGAGCctgagagagtgggggaggggggggagctGAAGGAACCGCTGCAGGAAGTACTGGAGGAGACGGTGGTGGCTGTGGAGCGGTCAGCAGTGTGCCCGGACACTAGGAGAGTTCAGAAAGACCAAccggaggagagagagaaggagagcgagagggaggaaGTGGCAGTGTGGGTTAGGACGGGCCAGCCCTCTGAGCCTAGGCTGGAGATCCTGGAAAATGGCAACGCTGGGATGGAGATCGGGAGCTGGCACCCCAGGATGCCGCCCCATGGCCAGGAGCTGCTCTGGGGTGACACCTGCACCCCCCCCAGAGAACAGGCCTCCCCCACGGGCACCGACTCCCCCCTGGACCTGCCTCTGCTGGAGACCCCCGTAATGGAGAGAGTCTCTGCATCTGGACAGGCAGGCcccactccccctccccccaccacagACCCCAGCATCAAGTCCGTCATCAAGCGCACCAAGGAGACAACCAACGTTCACCCCATGATCCGGGATGGTCAGCAACGCAGGAAGCTGGGCCCGATCATCTTCCACAAGACCCGCTCACAGGACCGGCTGATCGAGGAGCTGCAGGGCCGTCTGGGCATCGCCAGCCGCCCTGAGCGGTGGACAGACCGGCAGGATGACTGGCTGACCGAGGGCGTGATCGTCATGTCCAAACCCGCACGCTTGGGGCAGGAGTGTGGGGGTGTTGAGGTCGACAAGTCCGACCTGAACCGGCTGGGAGTCCAGACAGTGGCCAAGGGTGTCTGCGGGGCCTGCAAGAAACCCATCGCTGGACAGgtGGTGACGGCAATGGGCAGGACGTGGCACCCCGAGCACTTTGTGTGCACACACTGCCAGGAGGAGATCGGCTCCAGGAACTTCTTTGAGCGTGACGGGCAGCCCTACTGCGAGCGGGACTACCACAACCTGAGCAGTGGAAAACATGAGCTAATCCCAGCATCCCACTCCCTCACACTCCCTAACCTCCCCACCCGGCACAGACCCAGTAAAGTGGTGACGGCCCTGGACCGGACCTGGCACCCTGAGCACTTCTTCTGCGCCCAGTGTGGGGCGTTCTTTGGCCCAGAAGGTTTCCATGAGAAGGATGGGAAGGCCTACTGTAGGAAGGACTACTTCGACATGTTCGCCCCCAAGTGCGGTGGCTGCGCCCGCGCCATCCTGGAGAACTACATCTCGGCCCTGAACGCGCTGTGGCACCCAGAGTGCTTTGTCTGCCGGgAGTGCTTCACCCCTTTCGTGAACGGCAGCTTCTTCGAGCACGATGGGCAGCCCTACTGCGAGGTGCACTACCATGAGCGCCGCGGCTCGCTCTGCTCCGGATGCCAGAAGCCCATTACAGGCCGCTGCATCACCGCCATGGCACGCAAGTTCCACCCCGAGCACTTCGTCTGTGCCTTCTGCCTCAAGCAGCTCAACAAGGGCACCTTCAAGGAGCAGAACGACAAGCCCTACTGCCAGAGTTGCTTCGTCAAACTCTTCAGCTAGAGCAGAGAGGAGGATGGGCAGGGGGcaaaggagggaggaggggactTGCAGACATGCCAGGacaagagaggaggaggagacaggCAGGAAGGAGGAgcaagagggggaggggggaggcagACAGGTGGGG

Function

symbol description
pxn Enables several functions, including beta-catenin binding activity; neuropilin binding activity; and vinculin binding activity. Involved in several processes, including endothelial cell migration; enzyme linked receptor protein signaling pathway; and positive regulation of stress fiber assembly. Located in several cellular components, including focal adhesion; lamellipodium; and stress fiber.

NR:

description
paxillin isoform X1

GO: NA

KEGG:

id description
K05760 PXN; paxillin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018598 True 3223 mRNA 0.63 14 14784380 14797365

Neighbor

gene id symbol gene type direction distance location
AMCG00018596 rplp0 coding downstream 5525 14773974 ~ 14778855 (-)
AMCG00018590 gcn1,LOC107699625,LOC107553027,LOC104958133,LOC107698162,LOC104964287 coding downstream 14050 14750279 ~ 14770330 (-)
AMCG00018589 rab35,LOC103397428 coding downstream 35216 14738394 ~ 14749164 (-)
AMCG00018591 NA coding downstream 82134 14648143 ~ 14702246 (-)
AMCG00018592 NA coding downstream 136275 14647092 ~ 14648105 (-)
AMCG00018594 ctu1 coding upstream 21418 14818783 ~ 14821860 (-)
AMCG00018595 NA coding upstream 27340 14824705 ~ 14830166 (-)
AMCG00018599 NA coding upstream 41205 14838570 ~ 14849909 (-)
AMCG00018597 NA coding upstream 62392 14859757 ~ 14871803 (-)
AMCG00018601 NA coding upstream 77386 14874751 ~ 14875404 (-)
G117432 NA non-coding downstream 67 14780287 ~ 14784313 (-)
G117338 NA non-coding downstream 79922 14703640 ~ 14704458 (-)
G117319 NA non-coding downstream 148041 14635404 ~ 14636339 (-)
G117293 NA non-coding downstream 196330 14578236 ~ 14588050 (-)
G117254 NA non-coding downstream 305443 14478095 ~ 14478937 (-)
G117438 NA non-coding upstream 36491 14833856 ~ 14835725 (-)
G117441 NA non-coding upstream 59055 14856420 ~ 14857595 (-)
G117472 NA non-coding upstream 181676 14979041 ~ 14980384 (-)
G117501 NA non-coding upstream 416803 15214168 ~ 15214431 (-)
G117646 tbx1 non-coding upstream 1225233 16022598 ~ 16025073 (-)
G117377 NA other downstream 46068 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 263505 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 521226 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1056510 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1527130 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 701297 15498662 ~ 15518315 (-)
G117784 NA other upstream 2211533 17008898 ~ 17009301 (-)
G117823 NA other upstream 2428725 17226090 ~ 17256271 (-)
G117899 NA other upstream 2805991 17603356 ~ 17603848 (-)
G118075 NA other upstream 3669003 18466368 ~ 18474245 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035387 pxnb coding NC_007119.7 CM002892.2 3496204 ~ 3519152 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_11315732_11327304 PXNB, PXN, PXNA coding CI01000010 null 11314750 ~ 11327304 (-)