AMCG00018599


Basic Information

Item Value
gene id AMCG00018599
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14838570 ~ 14849909 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018599
CGGCCACAATGAGCAACTATAAAGCCGGACTTATCTGTGTATCACTGAACTTTAATTTGGGACTCAGCCGGGTTGCAGGTTGCGTCCTCAAAGGCGCTCAGTTGTCTCAGTGCTGGAGTAGATTAGGTTAGTGCCGGTGACGTTTGGCCTCATTGACCGATGTATTCGCGCACTGTGCCCAGCCAGTGTAAACAGTAGGTAGTTTCTTGCAGTCGTTTGATTGTTTGACATAAAACGTATagaaacatttatacaaattgCAGCGCCTTTTGGAAACAAGTAAGTTTTTCAAGCATGACGATCTCCCGGACACGCATCTCTATAGCCCTGGGGGTGGTGGGCGCCACGACCGCCCTGCTCGGGACCGTCCTGGTTTTCGTGGGACCCATTATCGTGGACCAGCAAATCGCAAAGAATGTGCGGATTGACCCGAGCAGCAGCATGTCGTACACCATGTGGAAGGACATTCCTGTGCCCTTCTTCATGTCTGTGTACTTCTTCAATGTGCTGAACCCCGACGAGGTCCTCCTGGGGGAGAAGCCCATGGTGGAGCAGAGGGGACCCTATGTATACAGGGAATTCCGACAGAAGAGCAACATCACGTTTCACGCCAACAGCACAGTGTCCTACCGGGAGTACCGGCAGTACCACTTCTTCCAGAACATGTCTGTGGGGAATGAATCCGACATCGTTACTATCCCCAACATGCTGGTGCTGGGTGCTGCGGTGATGATGGAGAACCAGCCTTATGGACTCCGACTGCTCATCAGTGCCACCTTCAAGGCCTTCAATGAGGGGCCCTTCCTGACCAAGACGGTGGGGGAGCTGATGTGGGGCTACGAGAGCAAGCTCGTCGAGTTCCTCAACAAGTTCTTCCCTGGAATGATTCCAGGGGATGGGAAGTTTGGGCTGTTTTCTGAGTTCAATAACTCCAACACTGGCCTCTTCACTGTGTTCACTGGGATGGATGACATCCGGAAAGTCCACAAGATTGACACCTGGAACTACCTGAAAGAGGTGAACTACTGGAACTCTGAGCAGTGTAACATGATCAATGGCACAGCTGGCCAGATGTGGCCTCCCTTCATGACCAAGGAGAGCACACTGCCCTTCTACAGCCCTGATGCCTGCAGGTCGATGGCATTGGTGTACCAGCAGCCGGGGAAGATCGCAGGGGTGCCTGTGTTCCGCTACGTTGCACCCACCACGCTGTTCGCCAACGGCACGGACTACCCCCCCAATGAGGGCTTCTGTCCTTGCAGGCAGTCCGGCATCATGAATGTCAGCAGCTGCCGGCACAGTGAGTCCgagtgggACTCGCCTGTGTTCATGTCCCACCCGCACTTCTACAATGGTGACCCGGTGCTGCGGGAGTTTGTCCACGGCCTGAGTCCCAACGAGGAGGAACACGGCCTATTCATCGACATCCACCCTGAAACGGGCGTCCCAATGAATGTGTCCATCAGGCTGCAGTTGAACCTGTTTGTCAAGAGCGTGCCAGGGATCACGGAGACTGGGAAGATCGCGCCAGTGGTGTTTCCCATGATGTGGTTCGCAGAGaGCGGGTACATCGATGGCCCCATCCTGAGCACCTTCTACACCAACCTGGTGGTGATGCCTGCCATCATGGAGTACTCCACCTACATATTCATCGTGCTGGGCGTCCTCATGGTCATTGTAGCGATCGGCCTGGCCCTCTGCAGCAAGAAACCGGCGGAGAAGGTGACTGGCAATGCACCGGACCTGGACGATTCGGAGACAACTCCCCTCCTGGTGGACTCGGCACCCTCCCAGTGA

Function

GO: NA

KEGG:

id description
K13885 SCARB1; scavenger receptor class B, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018599 True 1797 mRNA 0.55 12 14838570 14849909

Neighbor

gene id symbol gene type direction distance location
AMCG00018595 NA coding downstream 8404 14824705 ~ 14830166 (-)
AMCG00018594 ctu1 coding downstream 16710 14818783 ~ 14821860 (-)
AMCG00018598 pxn,LOC107748058,LOC107557596,LOC106579946 coding downstream 41205 14784380 ~ 14797365 (-)
AMCG00018596 rplp0 coding downstream 59715 14773974 ~ 14778855 (-)
AMCG00018590 gcn1,LOC107699625,LOC107553027,LOC104958133,LOC107698162,LOC104964287 coding downstream 68240 14750279 ~ 14770330 (-)
AMCG00018597 NA coding upstream 9848 14859757 ~ 14871803 (-)
AMCG00018601 NA coding upstream 24842 14874751 ~ 14875404 (-)
AMCG00018607 sept5 coding upstream 30690 14880599 ~ 14885351 (-)
AMCG00018606 LOC106580435,LOC105014311,LOC108265487 coding upstream 49903 14899812 ~ 14923007 (-)
AMCG00018605 cdc45 coding upstream 89865 14939774 ~ 14948267 (-)
G117438 NA non-coding downstream 2845 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 54257 14780287 ~ 14784313 (-)
G117338 NA non-coding downstream 134112 14703640 ~ 14704458 (-)
G117319 NA non-coding downstream 202231 14635404 ~ 14636339 (-)
G117293 NA non-coding downstream 250520 14578236 ~ 14588050 (-)
G117441 NA non-coding upstream 6511 14856420 ~ 14857595 (-)
G117472 NA non-coding upstream 129132 14979041 ~ 14980384 (-)
G117501 NA non-coding upstream 364259 15214168 ~ 15214431 (-)
G117646 tbx1 non-coding upstream 1172689 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 1444921 16294830 ~ 16296445 (-)
G117377 NA other downstream 100258 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 317695 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 575416 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1110700 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1581320 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 648753 15498662 ~ 15518315 (-)
G117784 NA other upstream 2158989 17008898 ~ 17009301 (-)
G117823 NA other upstream 2376181 17226090 ~ 17256271 (-)
G117899 NA other upstream 2753447 17603356 ~ 17603848 (-)
G118075 NA other upstream 3616459 18466368 ~ 18474245 (-)

Expression


Co-expression Network