AMCG00018602 (LOC102789415)


Basic Information

Item Value
gene id AMCG00018602
gene name LOC102789415
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14954564 ~ 14981705 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018602
CGGAAGCTGGACTGTTGCAATGGCAGGCATGGAGTCGATGTGGAGGCCTCCCCGGTCTTGCAATGACTACTGGAGCGAGTACAAGCACTGCAAGAGCCTGATGAACCGCTTTCACCACTACTACACCTTTGGAAAGTCACCCTCCTGCAAGCAGTGGAAGACAGACTACTACACCTGCGTAGACTGGGAGCGACACCAGGACACAGCAGCCAAGGATGCCCTGCGCCAGAGCGAGAGAGCCAGGCTGGCACAGCAGAGGCAGCACGATCCAGTCTGGAAGCTGAGGAAGACGCCCCCTTCGGACTGGCACTTACCCCTCCACCACGGCAGCCCCAAGGACAGCTGACCCGCCCACCTAAGAGCACTCGTGCTGCGTGCCGGGCCGATCCATTTCATAAATTGTTTTACAAGCTGCAGGCTTGGAAACGAACTGTACTGATTGAGGCGTATAATAAAATGCTGTGTTATTCTTCTAATTCCACATGTGTCCAACAGTCACAAGCCTGGCATTGTAACATTTTCCACTCCTGTAGAGTCTACTTCTAAATCAACAACTTATACATAAGctgttaatttttatttcccaTTGTCAAAGCAGCTTCCCAGTATAGGGAATTACACAtcgtatttgttttcatgtccACTATTGCTGCATTTCCGGATCACTTACCTGAGAAAGggtatacaattttttttaataaaataagtttagTCATTTCCATTACCTGATTCTACCTTGTCAATGTCTCCCCCATTATAAAATGCTGGGTGTGgtttttacatttgtgaaaagcaaaataaaaatgaaaacatttgtgttgtgAGACACcccatttccttttaattacatattggggaaaaaaaaaaaaagtgtgatgaATAAAAGTAGTGCAAGTGGTCACTGCTGGCAAGTTTAACTAGGGAGTTTCCTTCCGCTCGAAGCCAGAATGAGGAGAGTCAATGAGATAATTCCTCTTGATAATTGCACCAAGCCATTGCAAACCACACCAAttgctgtattgtatttattcataatttattacGTATCAAATCCCAATCTGATTACTTAACAGGTTGTAGACGAGGGATATGCTTGCTGGCGTGCATCCTGTCCACTACAGTTCAGGTCAGCTGTATCCTGCGGTTATCAATAATCAAACCAATGAGTCAATGGTGGGCTGTTCAGGACCTTCATTACCTAATTGAGCCAATTAATTTGGATGTCATTTCAGATCCTCTGCTGTTTGCAAGGCTTAAACCCATCTCAGAGATAGAGACTGGTGTCCAAGACAGGAGTTTTGTATTCCTGTTGTAGAGGGAAAAGCAGGGTCTTTCCATCATTTTTTTAGGTAAATTGAGCtcataattagttaattgaactaattatccACTTAACTGTACTAAACCAATTGAAAGTACAACCCCATGCTGGGCTCTTTTTACAGGCGATCAATGGGGGACTGCAGCCCGAGACAGGATGTTGTCCTACTGTGTGTAGACCTTGGTGATGTCATTGTATTTGCCATCAGGGGAGCGGTAGTTGTCTATGGGTGGGCTGTAGCTGGGCCCCTGGTGGTTAAAGGGGAAGAGTCTTGCATCTCGTTTGACTGCAGCCTGATACAGCTCCTCAGACTCCTGCCGTAGCTGCTGGAGTGCCTCCTTCTGGGCGTCCAGGGCAGCACTGATGGCTGCCATCTCTGTGCAGTTCTGAGTGTACTTGAACCGAGCCCACTCCTTCAGCAGCAGGGCTCTGCGCTCGCTCTCTTCCAGGGACAGCTGCGGTGGGgggggttaCCTGGTTTCATCGAGGAACTTGACGGGGGTGACAAAGTCTTCTATGGGGATGAACTCAGGCGGGATCTTCTCCAGCTTTTTCACCTTCTTCTTCAGGCGATCCCTCAGTGCCTGCTCCCTCTTCGGGTCAACCTTCTTCTTTTTCCTGGGCTCggctCTCACAGGGAGAGACTTTTTCAGGGCCAACACAGAGGGAAACCAGTGACTTTGTCTGCTCTGGCAGCTCCGTCCCGCAAGGGAGCTTATAACTTCAGACTGTCCATATCCGCATTTCTCTGCTGGAGGATGCATCACACCCATTGTACCAATGCTATCGCTCGTGGTTATTTGGCGCAGATATCCTAAGCCTGACCTCTCTCAGGGCATGTGTTTCCAGGGGAACTTTAGGAAAGGTCGGATACTTcctgtgttgctgctgctgcggctgcTGCAGGGAGCGAGAGATGCGAGCGACGGGAATGGAGTTGCACTGAAAGCACCAAGTGACTGACGGGCTTTAGCGAAAACGTGtcgggaagagagagggagcgagagggTGGACAGTGCCCGGGGAAAAGCCACGAAGCGACGGGCAGAGCAAAGGGCGAGGAAGAGAAGAGGGGGGAAACATTGTAGCCGGCTCCAGGACTTTCCCTGATTGTTGGGCTGCGCTGGAAATGAAGCTTTTGAAGCCCACTTGGGTCAGTCACAATGGAAAACCAATATTTTCTGTTGACATCCATCCAGAGGGCACGAAGTTTGCAACCGGAGGGCAAGGGGAGGATTCTGGGAAGGTTGTCATATGGAACATGGCGCCTGTTCTGCGAGAGGAGGATGAGAAAAATGAGAACATTCCCAAGATGCTTTGCCAGATGGACAACCACTTAGCCTGTGTGAACTGTGTGCGCTGGTCCAACAATGGCCTGTACCTGGCGTCTGGAGGGGATGACAAACTGGTCATGGTGTGGAAGAGAGCAGCGTACATCGGCCCCAGTACTGTCTTTGGGTCAAGCAGTAAGCTGGCCAACGTGGAGCAGTGGAGGTGTGTAACCATACTGCGAAACCACACGGGAGATATGGTGACCACACTGAAGGGCCACACTGGGCTGGTGAAGGGGCTGACCTGGGACCCGGTGGGGAAGTACATCGCTTCCCAGGCCGACGACCGCAGCCTGAAGGTGTGGAGGACCATGGACTGGCAGCTAGAGACCAGCATCACCAAGCCTTTCAACGAGTGTGGCGGGACTACCCACGTGCTGCGGCTCAGCTGGTCACCGGACGGTCAGTACCTGGTGTCTGCCCATGCCATGAACAACTCGGGCCCCACCGCCCAGATCATTGAGCGAGCCGGCTGGAAGACTAACATGGACTTCGTCGGCCACAGGAAAGCCGTGACCGTGGTGAAATTTAATCccaaaatctttaaaaagaagcagaagaatGGCAGCTCTCCCAAGCCCAGCTGCCCTTATTGCTGCTGTGCCGTCGGGAGCAAAGACCGATCCGTGTCTGTCTGGCTCACCTGTTTGAAACGCCCCCTGGTGGTCATCCATGACTTGTTTGACAAGTCCATCATGGACATAACTTGGACACTGAATGGGCTGGGTATCCTGGTGTGCTCCATGGACGGCACGGTGGCGTTCCTGGACTTCTCTCAGGACGAGCTAGGGGACCCGCTCAGCGAGGAGGAGAAGAACATCTATGGCAAGAGCCTGGCCATCATCACAGAGGCCCAGctgtccaccaccatcatcGAGGACCCCGAGATGCTCAAGTACCAGCAGGAGAAACAGCTGTCGGAGCACCGGGACGCCGCCAACAGGGATTCCTCCGCCGCCGCCACGCCAAAGCTGACCAGCGTGGTGAACGGAGAGTCCCTGGAGGACATCAGGAAAAACCTATTGAAGAAGCAGGTGGAGACCAGGACGGCGGACGGAAGGAGAAGGATCACACCTCTCTGCATTGCTCAGCTGGACACGGGGGATTTCTCACCAGCGCTCTTCAACAGCGTCCCGATCCTGCCCGGATCGTCGATGTCGTCCCAGCTCACCCCGCAGCTCACCTCCTCCGACTCCAACACCAACTCGCTCGGCCTCAAGGCCTCTCAGGacgccccccccgccccctcaaGCAAACCCCCTGACGAACTGCAGCACAAAGACGGCCTCAATGCTGTGGCTCCGGGTTCCTCCACGGCCATCAACTCCAGCGCCCTGAAACCCAACTCGCTGCTGAGCTCTGCAGCCAAGATCGAACCAATGAAAGCCCTAGATTCGCGTTTCACCGAGAGGTCAAAGGCCACGTCAGGGGTTGTCATCTCCTCTACTGCTGTGACACTCACCCCAATAGAACGaGCGAAGGACCCAAGCGCTTTAAAGGAGTCCAAGTCGAAAGACGAGACCAGCAGCGACAGCGAAGACAAGATTGCAGCCGTCAAGTGCCTCTCCAAGAGGAAGGGCGAGGTGGAGGGGCCGGAGGTGGTGGAGAAGAGGAAAAAGGGACGGCCCAGGAAAGACTCCAAACTCTTGACAGCTGCTCCCTCGGCAGAGAAGGAGCCCTGTAGGGTTGTAGCTCCAGTCGTGGTGCTGAAgctccccacccccacacctCAGAAAGCTTTTACACTACAGATAAGCTCGGAGCCCTCCATATACATCGAGGTGGAGAACGAGGTGTCGGCACTGGGGGGGGCGAAGCTGAGCCGGCTCAGGTGTAACCGGGAGGGCAGGGAGTGGGAGACGCTGCTGCCCAGCCGGATCCTGACTGCGGCCGGCAGCTGTGACATCATCGGCGTGGCATGCGAGGACAGGATGCTCTCGGTGTTCTCGGCATGTGGGCGGCGGTTGCTCCCAGCGATCCTGCTGCCGGCACCCATGTCCACACTGCACTGCGCTGGTTACTTCGTCATGGCACTTACCGCCTGCGCCACGCTGTCAGTCTGGGATGTCCAGAAGCAGTGTGTGCTGGTGAAGAACGAATCTTTACAAGTTATCTTATCAGGGACGGATACCACGGTTTCTCAGTCCTTACTCACGCAGCAGGGAGTCCCGGTCATCAGCCTGTCCAATGGGAAGTGCTATTGCTTCAACTCCTCTCTGGAGACATGGAACCTGATCGCAGACAAGCAGGACTCCCTGGTGCAGTGTGCCGACTACAGGGCCTGCCTGCCCTCCCAAGAGGCCATGCTGTCCAGTGGGCCCTTGGCTGTCATACAGGGCCGCACTTTAAACAGTGCGGGCCGGCTGGCGTCCAGGCTCTCCTCCACACCTCACCAACTCCAGCAGGGAATGACTTTGGCCTATCTGGAGAACCAGATGGCTTCGGCACTTATCCTCAAGTCCAGCCAGGAGTACAGGCACTGGCTGCTCATCTATGCACGCTTCCTGGTCAATGAAGGGTCGGAGTACCGGCTGCGAGAGCTGTGTAAAGACCTACTAGGACCAGTGCACAAATCAACTGGTAGCATATGGGAAGCCAGCGTTCTGGGGCTGCGGAAACGAGACCTACTGAGAGAGGTCCTGCCCGTGATCGGCCTGAATCTGCGCTTCCAAAGGCTCTTCACAGAATACCAGGACCAGCTGGAGCTGCTCAAGAACATATAGCACTTTCTCCTCCTCACCCCACCCACAAGGGGGAGCCAGTCATCAGTAGCGAGCCGCAGCCTGgccctccaccccccccaccccccgcttCCCGACCCTGGAGGGCGCCACACCTCAAGATGCCCCGCTTGGAGATGCCCGCTGGGAAGGGTGTCTTtgcagcagtgtgtctgtgggaaGGGGATGGGGGTGTAGTTGGATGGACCACGCAATTTTGTAGAAAAAGGGGAAGAAAGTgttaataattaacaataataatgaaaataatattaattattacaatGATAGTTATGGAGAAGGCTACGTCAGGCCCCACTGGGTTCCCGGGAGGCGGTCTGTACTGGCTGGGTGCCGTGCTGCTGTAAGCGCAGAGCCGCCGCCGAGTGACCAACGCCCGGAACATGGACAGAAACGTTTACAGTCATAAGACAATGATCTCTGACCTCTCTAAGCCCCCATCCCCTTCCACACCACCCTCTTTTAGTTTCTGGGCCAATAACTCAGTTTTTGTCTGTCAAGACATGGACTACTTTTCTACTCGACCTCAATTCACTGCCCGTACGGGGATAGGGTTCAGGGCCGCAGGGTTGAAACCAGTAACATAAACAAACGATGACAAAACGAAGAATAAggcaacaaataaaataaaaatgtgtgcagGATTACTATGGCAACACCgaatatttgaacatttttttgACGGTGTGAGGGTTTCTCAATTTGTACATGGACTGTAATGGTGCCCTCGCGCggtttgtaatttttaaatgtttgtacaagagacctttttttcttctgtttttgtttcattttctaaaaaaaaaa
>TU147178
GTAGATGGGTTGAGCTGACCGGAAGTGGAATACAAATAGTGGGAGGGTCGAGGGGGCACGCTGAAGCCTGATTGGCTGAGAGCGTCGCTTTGTTTACGTGCTGTTTCTCCCGGAAGCTGGACTGTTGCAATGGCAGGCATGGAGTCGATGTGGAGGCCTCCCCGGTCTTGCAATGACTACTGGAGCGAGTACAAGCACTGCAAGAGCCTGATGAACCGCTTTCACCACTACTACACCTTTGGAAAGTCACCCTCCTGCAAGCAGTGGAAGACAGACTACTACACCTGCGTAGACTGGGAGCGACACCAGGACACAGCAGCCAAGGATGCCCTGCGCCAGAGCGAGAGAGCCAGGCTGGCACAGCAGAGGCAGCACGATCCAGTCTGGAAGCTGAGGAAGACGCCCCCTTCGGACTGGCACTTACCCCTCCACCACGGCAGCCCCAAGGACAGCTGACCCGCCCACCTAAGAGCACTCGTGCTGCGTGCCGGGCCGATCCATTTCATAAATTGTTTTACAAGCTGCAGGCTTGGAAACGAACTGTACTGATTGAGGCGTATAATAAAATGCTGTGTTATTCTTCTAATTCCACATGTGTCCAACAGTCACAAGCCTGGCATTGTAACATTTTCCACTCCTGTAGAGTCTACTTCTAAATCAACAACTTATACATAAGctgttaatttttatttcccaTTGTCAAAGCAGCTTCCCAGTATAGGGAATTACACAtcgtatttgttttcatgtccACTATTGCTGCATTTCCGGATCACTTACCTGAGAAAGggtatacaattttttttaataaaataagtttagTCATTTCCATTACCTGATTCTACCTTGTCAATGTCTCCCCCATTATAAAATGCTGGGTGTGgtttttacatttgtgaaaagcaaaataaaaatgaaaacat

Function

NR:

description
PREDICTED: protein HIRA-like

GO: NA

KEGG:

id description
K11293 HIRA, HIR1; protein HIRA/HIR1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018602 True 6200 mRNA 0.53 30 14954674 14981705
TU147178 False 923 TUCP 0.48 3 14954564 14956580

Neighbor

gene id symbol gene type direction distance location
AMCG00018603 ufd1l coding upstream 301 14949636 ~ 14954263 (+)
AMCG00018608 cldn5,LOC103357131 coding upstream 27040 14927162 ~ 14927524 (+)
AMCG00018600 NA coding upstream 120500 14831500 ~ 14834064 (+)
AMCG00018593 NA coding upstream 129806 14821991 ~ 14824758 (+)
AMCG00018588 bicdl1 coding upstream 222900 14707571 ~ 14731664 (+)
AMCG00018611 ppil2 coding downstream 448579 15430284 ~ 15468382 (+)
AMCG00018619 NA coding downstream 601888 15583593 ~ 15585087 (+)
AMCG00018618 NA coding downstream 656269 15637974 ~ 15648175 (+)
AMCG00018620 NA coding downstream 687110 15668815 ~ 15669669 (+)
AMCG00018624 NA coding downstream 700750 15682455 ~ 15691741 (+)
G117380 NA non-coding upstream 54646 14855079 ~ 14899918 (+)
G117389 NA non-coding upstream 157414 14796531 ~ 14797150 (+)
G117388 NA non-coding upstream 160325 14793885 ~ 14794239 (+)
G117387 NA non-coding upstream 160760 14792796 ~ 14793804 (+)
G117382 NA non-coding upstream 168077 14786025 ~ 14786487 (+)
G117521 NA non-coding downstream 510541 15492246 ~ 15529341 (+)
G117557 NA non-coding downstream 645634 15627339 ~ 15627719 (+)
G117574 NA non-coding downstream 711508 15693213 ~ 15695253 (+)
G117573 NA non-coding downstream 713721 15695426 ~ 15698865 (+)
G117660 NA non-coding downstream 1101648 16083353 ~ 16121445 (+)
G117383 NA other upstream 166431 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 177454 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 542285 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 555025 14330841 ~ 14399539 (+)
G117178 NA other upstream 606823 14345090 ~ 14347741 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2086507 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 2999435 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3737501 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3845892 18827597 ~ 18840095 (+)
AMCG00018717 trpv4,LOC106585668 other downstream 3912630 18894335 ~ 18908956 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location