AMCG00018603 (ufd1l)


Basic Information

Item Value
gene id AMCG00018603
gene name ufd1l
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14949636 ~ 14954263 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018603
TTTTCCTTTAACATGTTTGACCACCCCATCCCCCGGGCCTTCCAGAACCGCTTTTCCACACAGTACCGCTGCTACTCCGTCTCCATGCTGGCTGGGCCCAACGACCGATCCGACGTGGAGAAGGGAGGGAAAATTATAATGCCGCCATCAGCGCTGGACCAGCTCAGTCGCCTCAATATCACATATCCAATGCTGTTTAAGCTGACTAACAAGAACTCTGATCGCATGACTCATTGCGGTGTGCTGGAGTTCGTGGCAGACGAAGGCATTTGCTATTTACCACATTGGATGATGCAGAACCTGCTGTTGGAGGAGGGAGGCCTGGTGCAGGTGGAGAGTGTCAACCTCCTAGTGGCGACCTACTCCAAATTCCAGCCCCAGAGCCCAGACTTTCTGGACATCACCAACCCAAAAGCAGTACTGGAGAACGCGCTGAGAAACTTCGCTTGTCTCACCACCGGTGACGTCATCGCCATCAACTACAATGAAAAGATCTATGAGCTGCGCGTGATGGAGACCAAGCCCGACAAGGCCGTGTCTATCATCGAGTGTGACATGAATGTGGATTTTGATGCTCCTTTAGGCTACAAAGAGCCGGAGAGACGCACATATCACACGGAGGAACCCACAGAGGAGGATGCAGATCACAGCAGTTATGCCGAAATGGATGTGGGATTCAGGGCGTTCACTGGATCAGGAAACCGTCTGGATGGCAAGAAAAAGGGCATTGAACCCAGCCCTGCACCCATCGACCCCAGTGACATTAAGAGGGGGATCCCCAACTATGACTTCAAAATTGGGAGGATCACCTTCATTAGAAACTCCCGGCCTCCGCCCAAGAGAATGGACGACGAGGACGCTCTAAACAGATTCATTGCCTTCTCTGGTGAAGGACAGTCTCTGCGCAAGAAGGGGAGGAAGCCTTAGGCGAAGATACGGACTGTTGGACACACAGACTTGgcgagaggaggaggaggaggggctgGAGAATTCAGGGCCGGAGTTACTCACCTGACTGAGGAGTAACAAATAAAACACGTCATTGTCAACGCTGTCTCTGAAACACAGATACTGGCCTATGTtcgattttgtatttttcttctggctcctccagCAATGGCCTCCTCCACCAACGTCACTTTTCTTACAACACAGAAAACTGTCGTATTTGGAAAACATTATCAGGCTTGGTAAGTGATGGCAGGTTCAGGTGGAATTGTACATCTAGTCAcagaatttgtgtttttgctttgatgAAAGGGAGTTGAGTTGAGAACTGAGCATTTGAaggttttttttacagtgtaacTTTTTTTGGATTAGGTTTCATTAAGTATTTCTTATAAATGAATCCTGACATTTTGGTTgagaacacacagaacacattgtaagtttgttaatttatatataaattcagaAGCAAAATACTTAGAACTTTTAATAAAGATGAGGTATGCAGTTGTATTCTTTTTCTTATTGATGCTGATTAAACTTATGTGAATGCATGTCCTTCTATATAAACTTAAATACGCATCCTggtgtgtaaatgtaaaaataaatcaaaagccaACACACATTGAACTGTGAAAAGCAGTCAAGAAAGCAATGTGAATGGCAAAAGCAAAAGTAGTttgattgaaaagaaaatgaatgttcgattcattgaaatataaaaagcaatgtcACCAtctagaaatacaaaaat

Function

symbol description
ufd1l Predicted to enable polyubiquitin modification-dependent protein binding activity. Acts upstream of or within cellular response to xenobiotic stimulus. Predicted to be part of VCP-NPL4-UFD1 AAA ATPase complex. Human ortholog(s) of this gene implicated in DiGeorge syndrome and schizophrenia. Orthologous to human UFD1 (ubiquitin recognition factor in ER associated degradation 1).

NR:

description
LOW QUALITY PROTEIN: ubiquitin recognition factor in ER-associated degradation protein 1

GO:

id name namespace
GO:0042221 response to chemical biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process

KEGG:

id description
K14016 UFD1; ubiquitin fusion degradation protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018603 True 1705 mRNA 0.45 11 14949636 14954263

Neighbor

gene id symbol gene type direction distance location
AMCG00018608 cldn5,LOC103357131 coding upstream 22112 14927162 ~ 14927524 (+)
AMCG00018600 NA coding upstream 115572 14831500 ~ 14834064 (+)
AMCG00018593 NA coding upstream 124878 14821991 ~ 14824758 (+)
AMCG00018588 bicdl1 coding upstream 217972 14707571 ~ 14731664 (+)
AMCG00018586 LOC107677981,LOC107567443 coding upstream 302804 14630062 ~ 14646832 (+)
AMCG00018611 ppil2 coding downstream 476021 15430284 ~ 15468382 (+)
AMCG00018619 NA coding downstream 629330 15583593 ~ 15585087 (+)
AMCG00018618 NA coding downstream 683711 15637974 ~ 15648175 (+)
AMCG00018620 NA coding downstream 714552 15668815 ~ 15669669 (+)
AMCG00018624 NA coding downstream 728192 15682455 ~ 15691741 (+)
G117380 NA non-coding upstream 49718 14855079 ~ 14899918 (+)
G117389 NA non-coding upstream 152486 14796531 ~ 14797150 (+)
G117388 NA non-coding upstream 155397 14793885 ~ 14794239 (+)
G117387 NA non-coding upstream 155832 14792796 ~ 14793804 (+)
G117382 NA non-coding upstream 163149 14786025 ~ 14786487 (+)
G117521 NA non-coding downstream 537983 15492246 ~ 15529341 (+)
G117557 NA non-coding downstream 673076 15627339 ~ 15627719 (+)
G117574 NA non-coding downstream 738950 15693213 ~ 15695253 (+)
G117573 NA non-coding downstream 741163 15695426 ~ 15698865 (+)
G117660 NA non-coding downstream 1129090 16083353 ~ 16121445 (+)
G117383 NA other upstream 161503 14786623 ~ 14788133 (+)
G117379 rplp0,LOC107701857,LOC107654305,LOC107591459 other upstream 172526 14774115 ~ 14777110 (+)
AMCG00018567 NA other upstream 537357 14408958 ~ 14412279 (+)
AMCG00018564 mlec,LOC106579938 other upstream 550097 14330841 ~ 14399539 (+)
AMCG00018602 LOC102789415 other downstream 301 14954564 ~ 14981705 (+)
G117786 LOC101064881,LOC103134930,LOC106938822,LOC106933658,LOC103469853,LOC105937727 other downstream 2113949 17068212 ~ 17069670 (+)
AMCG00018681 NA other downstream 3026877 17981140 ~ 17983017 (+)
AMCG00018702 NA other downstream 3764943 18719206 ~ 18721343 (+)
AMCG00018712 NA other downstream 3873334 18827597 ~ 18840095 (+)

Expression


Co-expression Network