AMCG00018605 (cdc45)


Basic Information

Item Value
gene id AMCG00018605
gene name cdc45
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14939774 ~ 14948267 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018605
ATAATTTGGCGCcaggtttctttctttttaatcaggGGAAGTGTGTGTACTTTACGTTCTccattttacatacattttattcatttgtttttatttattttaaagcccaCTTTGCTCTATTATTGGACACCGGCAGAAGGGATTAAGATGTTTGTGTCTGATATTCGGAAGGAGTTTTATGACGTTGTGGTGAATCAGAGGCTGGCCCTCCTCGTCTCCTCCGACATCGATGCCTTGTGTGCCTGCAAAATCCTGCAAgCACTGTTTCACTGTGACCATGTTCAGTACACCCTGGTGCCAGTGAAAGGATGGCAGGACCTGGAAACCGCCTAcctggagcacaaggagcagTTCCGCTACTTCGTGCTGATCAACTGCGGGGCCAACGCAGACCTGCTGGAAACCCTGCAGCCAGAGGACGACACAGTTTTCTTCATCTGTGACTCCCACCGGCCGGTGGATGTGGTCAACGTCTACAACGACACACAGATCAAGCTCCTGATTAAACAGGATGACGACTTAGGCGTCCCCGCCTACGATGACATCTTCCGGGACGAGGACGAAGACGAAGAAGACTCGGGGAACGAGAGTGATACTGTGGAGAGGAGAATAGAGAAGCAGAGGAAGAGGCGAGAGTGGGAGGGAAGAAGGAGGGAAATCTTGTTTGACTACGAGCAGTACGAGTACCATGGCACTTCGTCTGCAACCGTGATGTTTGAGCTTGCCTGGGTCATGTCTAAGGACACCAAGGACATGTTGTGTATGAAATACGTGACGGATGTGGCGGCCCTGCAGAGACACGTATCCCGACACAACCATCGCAACGAAGACGAGGAGAACTCCCTGTCCATAGACTGCATGCGCATCTCCTTCGAATACGACCTGCGCCTGACCCTGTACCAGCACTGGTCCTTGTATGAGAGCATCTTCAACTCCTCTTACACATCCTCCAACTTCAAGCTGTGGTCTGTCCATGGGCAGAAGAAGCTGCAGGAtCTTCCcctgaaacaggtgaggcagaAATTCAACGCGATGGACATCTCCATCAAAGAGAACCTCCGAGAGGTCATAGAGGAATCCTCCAACAAATATGGCATGAAGGATATCCGGATCCAGACGTTTGGCGTTCACTTCGGCTTCAAGAACAAATTCCTGGCGAGCGATGTGGTGCACGCCGCCGCCGCCCTGCTGGAGAGCATGGAGAAGGATGAGAGCAACACTGACAACTTCATCCACGCATTGGACTGCCTCTCCAGGAGTAACCTGGAACAGCTGCACAAGGGCATCGAGCTGGCCAAGAAGAAGCTGATTGCGGTTCAGCAGACAGTGGCCAGCTGCATCTGCACCAACCTCATCATCTCACAGGGGCCCTTCCTCTACTGCTACCTCATGGAGGGCACCCCAGACGTCCAGCTGTTCTCCAAGCCCATGTCACTGACCCTCCTCTGCAAGTACCTGCTCAAGGCCTTCGTTCGCTCGACCAAGAACAAGCGCTGCAGGCTGCTGCCCCTGGTCATGGCTGCGCCCCTGGATGCAGAAAAGGGCACTGTGATCGTGGTGGGAATTCCTCCAGATTCTGAGACCTCGGACAAGAAGAACTTCTTCGGGCGGGCGTTTGAGAAGGCCGCTGAGAGCACCAGCTCCCGGACGCTGCACGACCACTTCGACACGGCCGtcatCGAGCTGAAGACTGAGGACAGAAGCAAGTTCCTGGATGCTCTCATCACCCTGCTGTCCTGAAGGCCTCTGGACAGTGGGACTGTTTTAACCAACTTGGGGCTGGTCTCTTATCTTTTTAATTCCTGTATGTGTGTAAattgtacaaattatttttttattgttgtctgTAATACTCCTTTGTTCACCCTGCCCACccctgtaaatattttaaagtgtagATGTATTGTAGCAAAGGTGTGAATAAATTGCTATTCTAATTAACCTTGgtctgagggggggggggatttatGATCATTTATCATCACATCTGAAATATTCTGGGAGTGTTTTCGG

Function

symbol description
cdc45 Predicted to enable DNA replication origin binding activity; chromatin binding activity; and single-stranded DNA binding activity. Predicted to be involved in DNA-dependent DNA replication; double-strand break repair via break-induced replication; and regulation of chromatin silencing at telomere. Predicted to act upstream of or within DNA replication and cell division. Predicted to be located in nucleus. Predicted to be part of DNA replication preinitiation complex. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 7. Orthologous to human CDC45 (cell division cycle 45).

NR:

description
CDC45-related protein

GO:

id name namespace
GO:0006270 DNA replication initiation biological_process

KEGG:

id description
K06628 CDC45; cell division control protein 45

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018605 True 2013 mRNA 0.51 18 14939774 14948267

Neighbor

gene id symbol gene type direction distance location
AMCG00018606 LOC106580435,LOC105014311,LOC108265487 coding downstream 16767 14899812 ~ 14923007 (-)
AMCG00018607 sept5 coding downstream 54423 14880599 ~ 14885351 (-)
AMCG00018601 NA coding downstream 64370 14874751 ~ 14875404 (-)
AMCG00018597 NA coding downstream 67971 14859757 ~ 14871803 (-)
AMCG00018599 NA coding downstream 89865 14838570 ~ 14849909 (-)
AMCG00018604 NA coding upstream 8986 14957253 ~ 14957886 (-)
AMCG00018609 NA coding upstream 223695 15171962 ~ 15177670 (-)
AMCG00018610 NA coding upstream 288893 15237160 ~ 15292085 (-)
AMCG00018613 aacs,LOC107672615,LOC108255473 coding upstream 431476 15379743 ~ 15418462 (-)
AMCG00018612 bri3bp coding upstream 473648 15421915 ~ 15428751 (-)
G117441 NA non-coding downstream 82179 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 104049 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 155461 14780287 ~ 14784313 (-)
G117338 NA non-coding downstream 235316 14703640 ~ 14704458 (-)
G117319 NA non-coding downstream 303435 14635404 ~ 14636339 (-)
G117472 NA non-coding upstream 30774 14979041 ~ 14980384 (-)
G117501 NA non-coding upstream 265901 15214168 ~ 15214431 (-)
G117646 tbx1 non-coding upstream 1074331 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 1346563 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 2205735 17154002 ~ 17155261 (-)
G117377 NA other downstream 201462 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 418899 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 676620 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1211904 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1682524 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 550395 15498662 ~ 15518315 (-)
G117784 NA other upstream 2060631 17008898 ~ 17009301 (-)
G117823 NA other upstream 2277823 17226090 ~ 17256271 (-)
G117899 NA other upstream 2655089 17603356 ~ 17603848 (-)
G118075 NA other upstream 3518101 18466368 ~ 18474245 (-)

Expression


Co-expression Network