AMCG00018606 (LOC106580435,LOC105014311,LOC108265487)


Basic Information

Item Value
gene id AMCG00018606
gene name LOC106580435,LOC105014311,LOC108265487
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14899812 ~ 14923007 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018606
ATGCATGAGGGAGGTTCCGGATTCCCTGGATTGgcctgggagagggagagagagagagaagcacacaattaaagtttatatatttatcgaTAACGAGAGGTTTCACATAGCCCCCTCGATTGCTGTGGAGATGTCGCAGCCTGCAGAGAAAGGGAAGTTTCCAGAAGCCGCTGGCTATGTTGGGTTTGCCAATCTTCCCAACCAGGTCCACAGGAAGTCGGTGAAGAAAGGCTTCGAGTTCACTCTGATGGTGGTTGGGGAGTCTGGGCTGGGGAAGTCCACCCTGATCAACAGCTTGTTCCTGACCGACCTCTACCCTGAGCGTTACATTCCAGGGGCTGCAGaaAAGATTGAGCGGACGGTGCAGATCGAGGCGTCCACCGTGGAGATCGAGGAGAGGGGCGTGAAGCTGCGTCTGACGGTGGTCGACACGCCGGGCTACGGAGACGCCATCAACAGCCAGGACTGCTTCAAGACGATCATCCAGTACATCGACAGCCAGTTCGAACGCTACCTGCATGACGAGAGCGGGCTGAACAGGAGGCACATCGTGGACAACAGAGTCCACTGCTGCTTCTACTTCATCTCCCCCTTCGGACATGGtCTGAAGCCTTTAGACGTGGAGTTTATGAAGGCAATCCACAGCAAGGTGAACATCGTCCCGGTCATCGCCAAGGCTGACACCCTGACTCTAAAGGAACGCGACCGACTGAAGAGGAGGATCCTGGATGAGATTGCGGAGCATGGCATCCGCATTTACCAGCTCCCGGACGCCGACTCGGATGAGGACGAGGAGTTTAAAGAGCAGACGAGAGTCCTCAAGGCCAGTATCCCCTtcgctgtgattggctccaaTCAGTTGATCGAGGTGAAAGGGAAGAAGATCCGAGGCCGGCTGTACCCCTGGGGCGTGGTGGAGGTGGAGAACCCCGAGCACAACGACTTCCTCAAACTGCGCACCATGCTGGTgacTCACATGCAGGACCTGCAGGAAGTCACCCAGGACCTGCACTACGAGAACTTCCGCTCAGAGCGTCTGAAGAGAGCTGGCAGGGCGGTTGAAGATGAGGTCATGGACAAGGACCAGATCCTGCTGCAGAAGGAGGCTGAGGATGCAGGAGATGATTGCCCAGATGCAGGCGCAGATGCGAATGAAGCCAGGAGACGAGTGAGGGGTGTGGCCTGGGCTGCCCTGCCGGACTGCCTCTCCACAGCAATGCAGAGCAAACCCGACCTTCGTCCACCTCCTTCAGccgcccacccccccacccccctccatcGCTCTCAGCGTGTGACTGACAGTACTTCAGCTAGGCAGGCCAGGAACCCACCCCCTGATCCCCCCATCCACAACGCTACTCCCAGGCCCACTGATTCCTGG

Function

NR:

description
PREDICTED: septin-2

GO: NA

KEGG:

id description
K16942 SEPT2; septin 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018606 True 1381 mRNA 0.57 13 14899812 14923007

Neighbor

gene id symbol gene type direction distance location
AMCG00018607 sept5 coding downstream 14461 14880599 ~ 14885351 (-)
AMCG00018601 NA coding downstream 24408 14874751 ~ 14875404 (-)
AMCG00018597 NA coding downstream 28009 14859757 ~ 14871803 (-)
AMCG00018599 NA coding downstream 49903 14838570 ~ 14849909 (-)
AMCG00018595 NA coding downstream 69646 14824705 ~ 14830166 (-)
AMCG00018605 cdc45 coding upstream 16767 14939774 ~ 14948267 (-)
AMCG00018604 NA coding upstream 34246 14957253 ~ 14957886 (-)
AMCG00018609 NA coding upstream 248955 15171962 ~ 15177670 (-)
AMCG00018610 NA coding upstream 314153 15237160 ~ 15292085 (-)
AMCG00018613 aacs,LOC107672615,LOC108255473 coding upstream 456736 15379743 ~ 15418462 (-)
G117441 NA non-coding downstream 42217 14856420 ~ 14857595 (-)
G117438 NA non-coding downstream 64087 14833856 ~ 14835725 (-)
G117432 NA non-coding downstream 115499 14780287 ~ 14784313 (-)
G117338 NA non-coding downstream 195354 14703640 ~ 14704458 (-)
G117319 NA non-coding downstream 263473 14635404 ~ 14636339 (-)
G117472 NA non-coding upstream 56034 14979041 ~ 14980384 (-)
G117501 NA non-coding upstream 291161 15214168 ~ 15214431 (-)
G117646 tbx1 non-coding upstream 1099591 16022598 ~ 16025073 (-)
G117710 NA non-coding upstream 1371823 16294830 ~ 16296445 (-)
G117809 NA non-coding upstream 2230995 17154002 ~ 17155261 (-)
G117377 NA other downstream 161500 14736138 ~ 14738312 (-)
G117267 ywhag,143g1,ywhag1,LOC106603950,LOC108233911,LOC107387033 other downstream 378937 14503403 ~ 14520875 (-)
AMCG00018555 LOC107689851 other downstream 636658 14242545 ~ 14263154 (-)
AMCG00018528 LOC104956910,LOC107742399,LOC107591749,LOC106595856 other downstream 1171942 13645368 ~ 13727870 (-)
AMCG00018522 NA other downstream 1642562 13253085 ~ 13257250 (-)
AMCG00018617 ypel1,YPEL1,ypelc,ypel2b,LOC106931471,LOC103374080,LOC108277989,LOC106586007,LOC106940241 other upstream 575655 15498662 ~ 15518315 (-)
G117784 NA other upstream 2085891 17008898 ~ 17009301 (-)
G117823 NA other upstream 2303083 17226090 ~ 17256271 (-)
G117899 NA other upstream 2680349 17603356 ~ 17603848 (-)
G118075 NA other upstream 3543361 18466368 ~ 18474245 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036164 zgc:63587 coding NC_007119.7 CM002892.2 4621243 ~ 4694458 (-)
grasscarp (Ctenopharyngodon idella) CI01000158_01641190_01654617 SEPT5, SEPT5B, SEPT5.S coding CI01000158 null 1641084 ~ 1654617 (-)